NO12G03870.1, NO12G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03870.1
Unique NameNO12G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr12:1082847..1084187 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1082847..1084187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03870.1 vs.
Match: XP_005855095.1 (aromatic amino acid aminotransferase I, partial [Nannochloropsis gaditana CCMP526]; EKU21265.1 aromatic amino acid aminotransferase I, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 404.1 bits (1037), Expect = 5.800e-109
Identity = 198/231 (85.71%), Postives = 210/231 (90.91%), Query Frame = 0 
Query:   22 IKTIAARATSASISLAGGIPHESTFVFRGVTWDMTNGSTITLKNRTLTGGTETEDGAADLPLNYMQGTGMPELRQELITHMRRYHTPAYDDWAVIPTTGSTDALTKCFQLFMPPPGKKPIILAEALVWAAVLAIAAPLGYEVRGLELDSDGMLPFALDTACLQLAEEGERAAFLYLTPHGQNPTGTSLSTERKEVLYALAQKHDLLIVEDDPYRLLFLPADPEEVTETAMP 253
            IK IAARATS SISLAGG+PHESTFVFRGVTW+M +GST+TLKNR LTGGTE EDGAA+LPLNYMQG+GMPEL  EL  HM+RYHTPAYDDWAVIPTTGSTDALTKCFQL MPPPGKKPIIL+E+LVWAA LAIAAPLGYEVRGLELDSDGMLP ALD AC QLA EGERAAFLYLTPHGQNPTGTSLS +RK  LYALAQ+HDL+IVEDDPYRLLFLPADPEE  E AMP
Sbjct:    1 IKKIAARATSRSISLAGGLPHESTFVFRGVTWEMDDGSTLTLKNRALTGGTEAEDGAAELPLNYMQGSGMPELCGELRAHMQRYHTPAYDDWAVIPTTGSTDALTKCFQLLMPPPGKKPIILSESLVWAAALAIAAPLGYEVRGLELDSDGMLPSALDVACRQLASEGERAAFLYLTPHGQNPTGTSLSPQRKRDLYALAQEHDLIIVEDDPYRLLFLPADPEETGEAAMP 231
The following BLAST results are available for this feature:
BLAST of NO12G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855095.15.800e-10985.71aromatic amino acid aminotransferase I, partial [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03870NO12G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03870.1NO12G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03870.1.cds1NO12G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03870.1 ID=NO12G03870.1|Name=NO12G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGTCGCTTGACCAAACCAGTAAGCGCCTGGCCCCACAATTTCAACGTTT
GGAAGGATCCTTGATCAAGACGATTGCCGCTCGGGCAACTTCGGCTTCCA
TTTCCCTTGCTGGCGGTATCCCGCACGAGTCGACGTTTGTGTTTCGCGGC
GTGACCTGGGACATGACCAATGGGAGTACCATCACGCTCAAGAACCGGAC
TCTGACGGGAGGGACTGAGACAGAGGACGGGGCAGCGGACTTGCCGCTGA
ACTACATGCAAGGCACGGGAATGCCGGAGCTGCGCCAGGAACTGATCACT
CACATGCGGCGATACCACACACCGGCGTACGATGATTGGGCTGTCATTCC
CACTACCGGCTCGACGGATGCTCTGACCAAATGCTTCCAGCTTTTCATGC
CCCCACCGGGGAAGAAACCCATCATTCTGGCCGAGGCTTTGGTGTGGGCA
GCCGTTCTGGCCATTGCGGCACCCCTGGGGTACGAGGTGCGTGGTCTTGA
GCTCGACAGCGACGGCATGTTGCCTTTCGCGCTGGACACAGCGTGTCTGC
AGCTTGCCGAGGAAGGGGAGCGAGCGGCGTTTCTGTACTTGACCCCGCAC
GGACAGAACCCGACAGGTACGTCCTTGTCGACGGAAAGGAAGGAAGTTTT
GTACGCGCTGGCGCAAAAACACGACCTGCTGATTGTGGAGGACGATCCCT
ACCGTCTTCTTTTTCTTCCCGCTGACCCTGAGGAGGTGACGGAAACCGCC
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCATAT
CGGAAGTGGAACGAGCTAACTATTCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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protein sequence of NO12G03870.1

>NO12G03870.1-protein ID=NO12G03870.1-protein|Name=NO12G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MSLDQTSKRLAPQFQRLEGSLIKTIAARATSASISLAGGIPHESTFVFRG
VTWDMTNGSTITLKNRTLTGGTETEDGAADLPLNYMQGTGMPELRQELIT
HMRRYHTPAYDDWAVIPTTGSTDALTKCFQLFMPPPGKKPIILAEALVWA
AVLAIAAPLGYEVRGLELDSDGMLPFALDTACLQLAEEGERAAFLYLTPH
GQNPTGTSLSTERKEVLYALAQKHDLLIVEDDPYRLLFLPADPEEVTETA
MPGLEGLPKSLLSLDVDGRVIHLESLSKWVCPGLRLGWLTGPKAFVEGAY
RKWNELTIQFPCTVSQSVFCSMLKQWGHAGLDAHLKQLQAHYARQRRAMH
HAAEKHLRGLATWDLPKAGMFVLFKVTALRGKGKAETEAVLEGLLAEDIL
MVPGYAFDPSPGKDAEPAFRATFATASPEKIEEGLARFARALARLT*
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mRNA from alignment at chr12:1082847..1084187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03870.1 ID=NO12G03870.1|Name=NO12G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr12:1082847..1084187- (Nannochloropsis oceanica)
ATGTCGCTTGACCAAACCAGTAAGCGCCTGGCCCCACAATTTCAACGTTT
GGAAGGATCCTTGATCAAGACGATTGCCGCTCGGGCAACTTCGGCTTCCA
TTTCCCTTGCTGGCGGTATCCCGCACGAGTCGACGTTTGTGTTTCGCGGC
GTGACCTGGGACATGACCAATGGGAGTACCATCACGCTCAAGAACCGGAC
TCTGACGGGAGGGACTGAGACAGAGGACGGGGCAGCGGACTTGCCGCTGA
ACTACATGCAAGGCACGGGAATGCCGGAGCTGCGCCAGGAACTGATCACT
CACATGCGGCGATACCACACACCGGCGTACGATGATTGGGCTGTCATTCC
CACTACCGGCTCGACGGATGCTCTGACCAAATGCTTCCAGCTTTTCATGC
CCCCACCGGGGAAGAAACCCATCATTCTGGCCGAGGCTTTGGTGTGGGCA
GCCGTTCTGGCCATTGCGGCACCCCTGGGGTACGAGGTGCGTGGTCTTGA
GCTCGACAGCGACGGCATGTTGCCTTTCGCGCTGGACACAGCGTGTCTGC
AGCTTGCCGAGGAAGGGGAGCGAGCGGCGTTTCTGTACTTGACCCCGCAC
GGACAGAACCCGACAGGTACGTCCTTGTCGACGGAAAGGAAGGAAGTTTT
GTACGCGCTGGCGCAAAAACACGACCTGCTGATTGTGGAGGACGATCCCT
ACCGTCTTCTTTTTCTTCCCGCTGACCCTGAGGAGGTGACGGAAACCGCC
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCATAT
CGGAAGTGGAACGAGCTAACTATTCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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Coding sequence (CDS) from alignment at chr12:1082847..1084187-

>NO12G03870.1 ID=NO12G03870.1|Name=NO12G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr12:1082847..1084187- (Nannochloropsis oceanica)
ATGTCGCTTGACCAAACCAGTAAGCGCCTGGCCCCACAATTTCAACGTTT
GGAAGGATCCTTGATCAAGACGATTGCCGCTCGGGCAACTTCGGCTTCCA
TTTCCCTTGCTGGCGGTATCCCGCACGAGTCGACGTTTGTGTTTCGCGGC
GTGACCTGGGACATGACCAATGGGAGTACCATCACGCTCAAGAACCGGAC
TCTGACGGGAGGGACTGAGACAGAGGACGGGGCAGCGGACTTGCCGCTGA
ACTACATGCAAGGCACGGGAATGCCGGAGCTGCGCCAGGAACTGATCACT
CACATGCGGCGATACCACACACCGGCGTACGATGATTGGGCTGTCATTCC
CACTACCGGCTCGACGGATGCTCTGACCAAATGCTTCCAGCTTTTCATGC
CCCCACCGGGGAAGAAACCCATCATTCTGGCCGAGGCTTTGGTGTGGGCA
GCCGTTCTGGCCATTGCGGCACCCCTGGGGTACGAGGTGCGTGGTCTTGA
GCTCGACAGCGACGGCATGTTGCCTTTCGCGCTGGACACAGCGTGTCTGC
AGCTTGCCGAGGAAGGGGAGCGAGCGGCGTTTCTGTACTTGACCCCGCAC
GGACAGAACCCGACAGGTACGTCCTTGTCGACGGAAAGGAAGGAAGTTTT
GTACGCGCTGGCGCAAAAACACGACCTGCTGATTGTGGAGGACGATCCCT
ACCGTCTTCTTTTTCTTCCCGCTGACCCTGAGGAGGTGACGGAAACCGCC
ATGCCGGGTTTGGAGGGGCTGCCCAAGTCATTGCTCAGCTTGGATGTGGA
CGGGCGCGTAATTCACTTGGAATCCTTGTCGAAATGGGTGTGTCCTGGTT
TACGCCTCGGGTGGCTCACGGGTCCCAAGGCGTTCGTGGAGGGCGCATAT
CGGAAGTGGAACGAGCTAACTATTCAGTTTCCCTGCACAGTCTCGCAATC
TGTGTTTTGTTCGATGCTCAAGCAGTGGGGCCATGCCGGATTGGACGCAC
ATTTGAAACAGTTACAAGCGCACTACGCGCGGCAACGACGCGCGATGCAT
CACGCTGCAGAGAAGCACTTGCGAGGACTTGCAACTTGGGACTTGCCCAA
GGCAGGTATGTTTGTGCTGTTCAAGGTGACAGCGCTGAGGGGGAAGGGAA
AGGCGGAGACAGAGGCGGTGTTGGAGGGTTTGTTGGCGGAGGACATATTG
ATGGTACCAGGGTACGCGTTTGACCCGTCACCAGGCAAGGATGCAGAGCC
TGCATTCCGCGCGACATTTGCGACGGCGAGTCCGGAGAAGATTGAGGAGG
GGCTTGCAAGGTTCGCCCGGGCATTGGCACGCTTGACTTAA
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Synonyms
Publications