NO12G03010.1, NO12G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03010.1
Unique NameNO12G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr12:827582..829534 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:827582..829534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03010.1 vs.
Match: EWM25731.1 (hypothetical protein Naga_100087g15 [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 4.500e-78
Identity = 218/487 (44.76%), Postives = 300/487 (61.60%), Query Frame = 0 
Query:    1 MCATAQYRNSPLDLQSLSMAKSAPMVASRTQALIDRSEILAHGGRAFVENVKTMAASGMLDRQKMIHWVRIVSLFNKATGKDTSHGLIDMIHNLLSDMRLTHE--ERLQQQEEEQCRGDSRAH-----------ATDFKHPELDELACYIVSRGGHGAETMFCSEAMKQLFISTDELTMTVQETGLTSLSVWATFTTREGLATLNRAASTVFLQKGTEHVEVEVECLTRTGLLVVCAATVSFRVFGNGKSTLILTLTVKQDAPPRAVTSSFASRKHTVSENG-AAEREAGISSSTRRTTYSSERLAALASKRKYGEEQKHRQLVQQQQQE----GRRRRPRPLDETPPSSTTTSISPSPSTASFSSLTSTSTLSSSSSLPPS-SIPSSPFLP--------SSRPPPQRIAVSSKRRKIPSTVAWSQEGPPVPEAISRRLATCSTNPPFMTGRGVSYDKEDKVFAFAAIPEQQQQLQQQQQQQLQVGL 461
            MCA     +  + L     +K  P VASRTQ LI + E LA GGRAFV+ ++ MA+ G+LDR+KM+ +VRIVSLFN+ATGKDTSHGL+D++++LL+ M    +    L Q E     G                ++    PELD+LACYI+SRGG GAE++FCSEAMKQLFISTDELT T++ETGLTS+SVWA+FTT EGLATL+RAA+ V LQ+ T  VEV+VEC+TRT LLV C  T++F V   G+S+L+L L VKQDA PRAV +    R   +   G  +   +   SS+RR+T+++ER A LAS+R+   +Q+ ++ +QQQQQ      +RRR  P +  P S +    S SP  AS SS+ STS+ +SS+S   S S+P+S  +P        S RPPP R   SS RRK    V+WS  GP +P  + R + + +   P   G  +   KE      A++  ++ +++Q +Q  L  G+
Sbjct:    2 MCAPNSLGSKMVGLPGTIGSKGTPSVASRTQTLIGQCENLAQGGRAFVQQIQKMASMGLLDRRKMVDYVRIVSLFNQATGKDTSHGLLDLVYHLLTCMSAGEDGGSSLSQIELLHTIGGGIGEIGGKGVRAVPGSSAATPPELDDLACYIISRGGTGAESVFCSEAMKQLFISTDELTCTLKETGLTSVSVWASFTTPEGLATLHRAAAAVLLQRDTSQVEVQVECVTRTDLLVACTGTLTFHVSEKGESSLVLCLAVKQDASPRAVGAPAKPRSDALLPAGEKSPPSSQRRSSSRRSTHAAERQAVLASRREQALQQQAKEQLQQQQQRHERASKRRRLPPTEAAPVSPS----SASPLHASSSSVCSTSSAASSTSTASSASLPASLAMPPATGTSSFSYRPPPHRPFPSSMRRKTSFPVSWSARGPLLPAGLLRLMDSGAAPEPLPMGL-LPAGKEG---FDASVDGERGRMEQGEQDGLSQGM 480
The following BLAST results are available for this feature:
BLAST of NO12G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 4.50e-78 / Id = 44.76SequenceEWM25731.1
Match NameE-valueIdentityDescription
EWM25731.14.500e-7844.76hypothetical protein Naga_100087g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03010NO12G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03010.1NO12G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03010.1.cds1NO12G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03010.1 ID=NO12G03010.1|Name=NO12G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
ATGTGTGCAACGGCCCAGTATCGAAATTCTCCACTGGACCTGCAGAGCTT
GTCCATGGCCAAGTCCGCTCCCATGGTGGCTTCCCGCACTCAGGCCCTCA
TCGACCGAAGCGAAATTTTGGCACACGGTGGCCGCGCCTTTGTGGAGAAC
GTGAAAACGATGGCAGCTTCAGGCATGCTGGACCGGCAAAAGATGATACA
CTGGGTGAGAATTGTCTCCCTCTTTAACAAGGCCACTGGCAAGGACACAT
CCCACGGGCTTATTGACATGATCCACAACCTCTTGTCTGACATGCGCTTG
ACCCACGAGGAGCGGCTGCAGCAGCAGGAAGAGGAGCAATGCAGAGGTGA
TAGCCGTGCTCATGCAACCGACTTCAAACATCCTGAGCTGGACGAGCTTG
CCTGCTACATAGTTTCTCGCGGGGGACACGGTGCGGAGACCATGTTCTGC
AGTGAGGCGATGAAGCAGCTCTTCATTTCCACCGACGAGCTAACGATGAC
CGTACAAGAAACGGGACTCACCTCTTTATCTGTTTGGGCCACCTTCACAA
CGCGTGAGGGACTGGCGACGCTGAATCGGGCGGCATCTACAGTTTTCTTG
CAAAAGGGCACAGAGCATGTGGAGGTGGAAGTGGAGTGTCTGACCAGGAC
AGGCTTGCTTGTCGTATGTGCGGCCACTGTCAGTTTCCGTGTGTTTGGGA
ATGGAAAGAGCACCTTGATCCTCACCCTAACTGTCAAGCAAGATGCACCT
CCTCGTGCCGTCACCTCCTCCTTTGCCTCCCGAAAGCACACGGTGTCAGA
GAATGGAGCAGCAGAAAGGGAAGCAGGGATATCGTCTAGTACGCGGCGCA
CCACCTACTCTTCGGAACGTCTGGCTGCATTGGCCAGCAAGAGGAAGTAC
GGGGAGGAGCAGAAGCACCGACAGCTGGTGCAACAGCAGCAACAGGAAGG
GCGAAGGCGCCGTCCCCGCCCGCTAGACGAGACACCGCCTTCCTCCACCA
CCACCTCCATCTCTCCCTCCCCTTCAACCGCCTCCTTCTCTTCCTTAACC
TCCACCTCAACTTTGTCTTCTTCTTCCTCTCTTCCCCCTTCCTCCATCCC
CTCTTCTCCTTTCCTCCCTTCCTCTCGCCCCCCCCCCCAACGCATCGCTG
TGTCAAGCAAGCGTCGGAAAATTCCCTCGACTGTGGCCTGGAGCCAAGAA
GGCCCTCCTGTCCCTGAAGCGATTAGTCGTCGCCTCGCCACTTGTTCTAC
AAATCCCCCCTTTATGACTGGACGTGGGGTTTCATATGATAAGGAGGATA
AAGTATTCGCCTTTGCAGCCATCCCCGAACAGCAACAGCAGTTGCAGCAG
CAGCAACAGCAGCAGTTGCAGGTTGGGTTGTGGGACGGGGAGGAAAAAGA
GCACAATCATTTGCAACGATGGGTTTTTTTACAACAGGAACAGAAGCAGC
TGCCACATGAGCAACCTCAGCAGGAACCACAACAGCAGCAGCAGCAGCAG
GTGGCGTTGGCCCCTGCTTGTCTTCTTCCTTCGGCGTTTTCGGCGCTTGT
CTCCTTGCCCGGAGTGCCCTCACCTCACATTTTTGTCGGAAACAGCAACG
AGGACAATAGCAGCAGCGGTGACGGGAGCACAGAACATGAAGATGAGGAG
GTGCATCAGGAGCAAATGCTGCAGCCGCAACCGCAGCCGCAGCCGCCGCC
GCCGCCGCCGCAGCAAGTGCCGGAACTGAAGATGGATGCGAATGAGGATC
ACGTGTGGGCATGGGCCAATGCGATTTGGGAGGAAGCTGATGGCGCGCTA
CAGCCACCTCTTGATCTGGGTGCTGGGACGGAAGCAGGGTTGATAGCAGT
TGATGAGATAGGAGGAGGGATGGAGGGAGGGGCGGAGGAAGTAATGATGG
GAAGTGTGGAGGATCCGGATTTGTGGCTGATGCTTGAGCAGCAGGGGCTA
TAG
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protein sequence of NO12G03010.1

>NO12G03010.1-protein ID=NO12G03010.1-protein|Name=NO12G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MCATAQYRNSPLDLQSLSMAKSAPMVASRTQALIDRSEILAHGGRAFVEN
VKTMAASGMLDRQKMIHWVRIVSLFNKATGKDTSHGLIDMIHNLLSDMRL
THEERLQQQEEEQCRGDSRAHATDFKHPELDELACYIVSRGGHGAETMFC
SEAMKQLFISTDELTMTVQETGLTSLSVWATFTTREGLATLNRAASTVFL
QKGTEHVEVEVECLTRTGLLVVCAATVSFRVFGNGKSTLILTLTVKQDAP
PRAVTSSFASRKHTVSENGAAEREAGISSSTRRTTYSSERLAALASKRKY
GEEQKHRQLVQQQQQEGRRRRPRPLDETPPSSTTTSISPSPSTASFSSLT
STSTLSSSSSLPPSSIPSSPFLPSSRPPPQRIAVSSKRRKIPSTVAWSQE
GPPVPEAISRRLATCSTNPPFMTGRGVSYDKEDKVFAFAAIPEQQQQLQQ
QQQQQLQVGLWDGEEKEHNHLQRWVFLQQEQKQLPHEQPQQEPQQQQQQQ
VALAPACLLPSAFSALVSLPGVPSPHIFVGNSNEDNSSSGDGSTEHEDEE
VHQEQMLQPQPQPQPPPPPPQQVPELKMDANEDHVWAWANAIWEEADGAL
QPPLDLGAGTEAGLIAVDEIGGGMEGGAEEVMMGSVEDPDLWLMLEQQGL
*
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mRNA from alignment at chr12:827582..829534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03010.1 ID=NO12G03010.1|Name=NO12G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr12:827582..829534- (Nannochloropsis oceanica)
ATGTGTGCAACGGCCCAGTATCGAAATTCTCCACTGGACCTGCAGAGCTT
GTCCATGGCCAAGTCCGCTCCCATGGTGGCTTCCCGCACTCAGGCCCTCA
TCGACCGAAGCGAAATTTTGGCACACGGTGGCCGCGCCTTTGTGGAGAAC
GTGAAAACGATGGCAGCTTCAGGCATGCTGGACCGGCAAAAGATGATACA
CTGGGTGAGAATTGTCTCCCTCTTTAACAAGGCCACTGGCAAGGACACAT
CCCACGGGCTTATTGACATGATCCACAACCTCTTGTCTGACATGCGCTTG
ACCCACGAGGAGCGGCTGCAGCAGCAGGAAGAGGAGCAATGCAGAGGTGA
TAGCCGTGCTCATGCAACCGACTTCAAACATCCTGAGCTGGACGAGCTTG
CCTGCTACATAGTTTCTCGCGGGGGACACGGTGCGGAGACCATGTTCTGC
AGTGAGGCGATGAAGCAGCTCTTCATTTCCACCGACGAGCTAACGATGAC
CGTACAAGAAACGGGACTCACCTCTTTATCTGTTTGGGCCACCTTCACAA
CGCGTGAGGGACTGGCGACGCTGAATCGGGCGGCATCTACAGTTTTCTTG
CAAAAGGGCACAGAGCATGTGGAGGTGGAAGTGGAGTGTCTGACCAGGAC
AGGCTTGCTTGTCGTATGTGCGGCCACTGTCAGTTTCCGTGTGTTTGGGA
ATGGAAAGAGCACCTTGATCCTCACCCTAACTGTCAAGCAAGATGCACCT
CCTCGTGCCGTCACCTCCTCCTTTGCCTCCCGAAAGCACACGGTGTCAGA
GAATGGAGCAGCAGAAAGGGAAGCAGGGATATCGTCTAGTACGCGGCGCA
CCACCTACTCTTCGGAACGTCTGGCTGCATTGGCCAGCAAGAGGAAGTAC
GGGGAGGAGCAGAAGCACCGACAGCTGGTGCAACAGCAGCAACAGGAAGG
GCGAAGGCGCCGTCCCCGCCCGCTAGACGAGACACCGCCTTCCTCCACCA
CCACCTCCATCTCTCCCTCCCCTTCAACCGCCTCCTTCTCTTCCTTAACC
TCCACCTCAACTTTGTCTTCTTCTTCCTCTCTTCCCCCTTCCTCCATCCC
CTCTTCTCCTTTCCTCCCTTCCTCTCGCCCCCCCCCCCAACGCATCGCTG
TGTCAAGCAAGCGTCGGAAAATTCCCTCGACTGTGGCCTGGAGCCAAGAA
GGCCCTCCTGTCCCTGAAGCGATTAGTCGTCGCCTCGCCACTTGTTCTAC
AAATCCCCCCTTTATGACTGGACGTGGGGTTTCATATGATAAGGAGGATA
AAGTATTCGCCTTTGCAGCCATCCCCGAACAGCAACAGCAGTTGCAGCAG
CAGCAACAGCAGCAGTTGCAGGTTGGGTTGTGGGACGGGGAGGAAAAAGA
GCACAATCATTTGCAACGATGGGTTTTTTTACAACAGGAACAGAAGCAGC
TGCCACATGAGCAACCTCAGCAGGAACCACAACAGCAGCAGCAGCAGCAG
GTGGCGTTGGCCCCTGCTTGTCTTCTTCCTTCGGCGTTTTCGGCGCTTGT
CTCCTTGCCCGGAGTGCCCTCACCTCACATTTTTGTCGGAAACAGCAACG
AGGACAATAGCAGCAGCGGTGACGGGAGCACAGAACATGAAGATGAGGAG
GTGCATCAGGAGCAAATGCTGCAGCCGCAACCGCAGCCGCAGCCGCCGCC
GCCGCCGCCGCAGCAAGTGCCGGAACTGAAGATGGATGCGAATGAGGATC
ACGTGTGGGCATGGGCCAATGCGATTTGGGAGGAAGCTGATGGCGCGCTA
CAGCCACCTCTTGATCTGGGTGCTGGGACGGAAGCAGGGTTGATAGCAGT
TGATGAGATAGGAGGAGGGATGGAGGGAGGGGCGGAGGAAGTAATGATGG
GAAGTGTGGAGGATCCGGATTTGTGGCTGATGCTTGAGCAGCAGGGGCTA
TAG
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Coding sequence (CDS) from alignment at chr12:827582..829534-

>NO12G03010.1 ID=NO12G03010.1|Name=NO12G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr12:827582..829534- (Nannochloropsis oceanica)
ATGTGTGCAACGGCCCAGTATCGAAATTCTCCACTGGACCTGCAGAGCTT
GTCCATGGCCAAGTCCGCTCCCATGGTGGCTTCCCGCACTCAGGCCCTCA
TCGACCGAAGCGAAATTTTGGCACACGGTGGCCGCGCCTTTGTGGAGAAC
GTGAAAACGATGGCAGCTTCAGGCATGCTGGACCGGCAAAAGATGATACA
CTGGGTGAGAATTGTCTCCCTCTTTAACAAGGCCACTGGCAAGGACACAT
CCCACGGGCTTATTGACATGATCCACAACCTCTTGTCTGACATGCGCTTG
ACCCACGAGGAGCGGCTGCAGCAGCAGGAAGAGGAGCAATGCAGAGGTGA
TAGCCGTGCTCATGCAACCGACTTCAAACATCCTGAGCTGGACGAGCTTG
CCTGCTACATAGTTTCTCGCGGGGGACACGGTGCGGAGACCATGTTCTGC
AGTGAGGCGATGAAGCAGCTCTTCATTTCCACCGACGAGCTAACGATGAC
CGTACAAGAAACGGGACTCACCTCTTTATCTGTTTGGGCCACCTTCACAA
CGCGTGAGGGACTGGCGACGCTGAATCGGGCGGCATCTACAGTTTTCTTG
CAAAAGGGCACAGAGCATGTGGAGGTGGAAGTGGAGTGTCTGACCAGGAC
AGGCTTGCTTGTCGTATGTGCGGCCACTGTCAGTTTCCGTGTGTTTGGGA
ATGGAAAGAGCACCTTGATCCTCACCCTAACTGTCAAGCAAGATGCACCT
CCTCGTGCCGTCACCTCCTCCTTTGCCTCCCGAAAGCACACGGTGTCAGA
GAATGGAGCAGCAGAAAGGGAAGCAGGGATATCGTCTAGTACGCGGCGCA
CCACCTACTCTTCGGAACGTCTGGCTGCATTGGCCAGCAAGAGGAAGTAC
GGGGAGGAGCAGAAGCACCGACAGCTGGTGCAACAGCAGCAACAGGAAGG
GCGAAGGCGCCGTCCCCGCCCGCTAGACGAGACACCGCCTTCCTCCACCA
CCACCTCCATCTCTCCCTCCCCTTCAACCGCCTCCTTCTCTTCCTTAACC
TCCACCTCAACTTTGTCTTCTTCTTCCTCTCTTCCCCCTTCCTCCATCCC
CTCTTCTCCTTTCCTCCCTTCCTCTCGCCCCCCCCCCCAACGCATCGCTG
TGTCAAGCAAGCGTCGGAAAATTCCCTCGACTGTGGCCTGGAGCCAAGAA
GGCCCTCCTGTCCCTGAAGCGATTAGTCGTCGCCTCGCCACTTGTTCTAC
AAATCCCCCCTTTATGACTGGACGTGGGGTTTCATATGATAAGGAGGATA
AAGTATTCGCCTTTGCAGCCATCCCCGAACAGCAACAGCAGTTGCAGCAG
CAGCAACAGCAGCAGTTGCAGGTTGGGTTGTGGGACGGGGAGGAAAAAGA
GCACAATCATTTGCAACGATGGGTTTTTTTACAACAGGAACAGAAGCAGC
TGCCACATGAGCAACCTCAGCAGGAACCACAACAGCAGCAGCAGCAGCAG
GTGGCGTTGGCCCCTGCTTGTCTTCTTCCTTCGGCGTTTTCGGCGCTTGT
CTCCTTGCCCGGAGTGCCCTCACCTCACATTTTTGTCGGAAACAGCAACG
AGGACAATAGCAGCAGCGGTGACGGGAGCACAGAACATGAAGATGAGGAG
GTGCATCAGGAGCAAATGCTGCAGCCGCAACCGCAGCCGCAGCCGCCGCC
GCCGCCGCCGCAGCAAGTGCCGGAACTGAAGATGGATGCGAATGAGGATC
ACGTGTGGGCATGGGCCAATGCGATTTGGGAGGAAGCTGATGGCGCGCTA
CAGCCACCTCTTGATCTGGGTGCTGGGACGGAAGCAGGGTTGATAGCAGT
TGATGAGATAGGAGGAGGGATGGAGGGAGGGGCGGAGGAAGTAATGATGG
GAAGTGTGGAGGATCCGGATTTGTGGCTGATGCTTGAGCAGCAGGGGCTA
TAG
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Synonyms
Publications