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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:788700..790924 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02830.2 vs.
Match: EWM25748.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 256.5 bits (654), Expect = 1.500e-64 Identity = 155/325 (47.69%), Postives = 194/325 (59.69%), Query Frame = 0
Query: 10 RHTSLPRLLLIPQLFLFASSSSVAPS---FILVPPSLLPPHRAFAIFKPQPSSWSSTSSRRISSSLSRNSSPSLSSFDIPFRTIIPVTPRVSHRRVYPADPILFLGSCFSDNMGGKLKENLKMNVEINPFGTAYNPVSIYRCLERLATGRPFEEEELEEHPQDGRWFSFDHHTSFSARDPSKVLSNINSRLAQGHVSLKHAKHVFLTLGTAHAYVLLSKE---RKGREKGE------------------------KRVVANC--------HRLPATSFRRELLDIPKIVSSLQSAIQSIRVINTECTITFTVSPVRHLRNAAGDA 297
+ TSL LL++ + L A S S +L S LPP P P +S + + + +R+S+ SSF FRTI+P+TPR R++PAD + F+GSCFSD MG LKE LKM VE+NPFGT+YNPVSI RCL RLATGR F++EEL HPQDGRW S +HH+ FS RD S L+ IN+RL G L+ A+HVF+TLGTAHAYV K K RE+GE + AN HRLPA FRRELLD P+IV +L ++SIR +NT CTI+FTVSPVRH+RNA G+A
Sbjct: 34 KKTSLRSLLVVKNIMLVACSFSPPQDGRLAMLSASSFLPP--------PLPRVGTSRPDQLLVTR-TRSSTRISSSFHNSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEA 349
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02830.2 ID=NO12G02830.2|Name=NO12G02830.2|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp GTGTAGAGAGGTGAGTGGGGACGCGCGAAGAACACAGCTGTTTGAATTCA GCGAATGGGTTGTCAACTTCGTACGTCCAAACTACTTGACCCACCGCCAC AGTCAATTATAATTGCCGCCACCATGCACAGGACGAGGACCTGCACTTGA GAGGATATCAAGGTGCGGACAACAAGGCCAGGGCTTGCAGGGGCAGTTCA AAAGCCTCAATCATCATTCTCCACCCCTACCACATTAGTCCTCACTCCCT GCTCACATTAGTCCTCACTCCCCCCAGTCCGTCTTGGTCCACCACATGCT TATGGCAGCCTGTTCCCCACGCCGTCACACCTCCCTACCACGACTTCTCC TGATCCCGCAGCTCTTCCTCTTTGCTTCCTCCTCTTCAGTGGCGCCATCA TTTATCCTCGTCCCTCCATCACTTCTACCTCCCCATCGTGCTTTCGCCAT CTTTAAGCCGCAGCCCAGCAGTTGGAGCAGCACCAGCAGCAGGCGCATTT CATCTTCACTATCCCGAAATTCCTCCCCCTCCCTCTCCTCGTTCGACATA CCCTTCCGTACCATCATTCCCGTTACTCCTCGCGTCTCTCACCGACGCGT CTACCCCGCAGACCCTATTCTGTTCCTCGGCTCCTGCTTCTCAGACAATA TGGGCGGGAAACTTAAAGAGAATCTAAAAATGAATGTGGAGATCAACCCC TTTGGCACAGCATATAATCCGGTATCGATTTACCGGTGCTTGGAGCGCTT GGCGACTGGGAGGCCATTTGAGGAGGAAGAGTTGGAGGAGCATCCCCAGG ATGGACGGTGGTTCAGCTTTGACCACCACACCAGCTTCAGTGCCCGTGAT CCGAGTAAGGTCTTGTCGAATATTAACTCCCGCCTGGCTCAAGGCCACGT CTCATTAAAGCATGCCAAGCATGTCTTTTTGACTCTGGGAACAGCACACG CGTATGTGCTTCTATCCAAGGAGAGGAAGGGAAGGGAGAAAGGGGAAAAG AGGGTTGTGGCGAATTGCCATCGGTTGCCGGCGACGAGCTTTCGACGGGA ATTGCTCGACATACCCAAGATCGTCTCATCCCTCCAATCGGCCATTCAAT CCATACGGGTCATCAACACAGAGTGCACTATCACCTTCACTGTCTCTCCT GTCAGACATCTCCGCAACGCCGCCGGGGACGCAATTCAAAGCTCTCGCAG CAAAGCCCAACTTCTCGCTGCCATCCACCAAGTCCTCGATGAAGACCTTC TTTCACCCTCCTCCTCTCCTTCCGTTTCCCCCTCTTCCTCCCCTTCCTCC TCTCTCCTCTCCTATTTTCCCGCCTATGAAATCATGATGGATGATCTGCG TGATTACCGTTTTTATGCCCCCGACATGATCCATCCCTCCCCTGTCGCAC TCGAATACATCTACTCGCGCTTCGCCGACGCCTACCTAGACTTCTCCCCG CCTTCCTTTCTCCTTCGCAAAGACCTTGAGACTTTACGACGCAACCTACA ACACCGTCCGTTAGACAGGACAAGTCCGGCGCACCAGCTATTCTTGAAGC AGCAGTTGATTAAAATGGAAGGGTTGCAAGCCTCGTGGCCGCATTTGGAC TTTGAAGCCGAGCGGGCAGTGGTCAGGAAGGGATTGGTGGAGTGAAGCGA GAATTAGCTATGTCCATAGTGAGACAGGGCAAATAGGAAATGTGCTCATA AAAGAAAATCATCAAATAAACTCAAAATATGACCAACATGGCAGGTAGCG AAGA back to topprotein sequence of NO12G02830.2 >NO12G02830.2-protein ID=NO12G02830.2-protein|Name=NO12G02830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MLMAACSPRRHTSLPRLLLIPQLFLFASSSSVAPSFILVPPSLLPPHRAF AIFKPQPSSWSSTSSRRISSSLSRNSSPSLSSFDIPFRTIIPVTPRVSHR RVYPADPILFLGSCFSDNMGGKLKENLKMNVEINPFGTAYNPVSIYRCLE RLATGRPFEEEELEEHPQDGRWFSFDHHTSFSARDPSKVLSNINSRLAQG HVSLKHAKHVFLTLGTAHAYVLLSKERKGREKGEKRVVANCHRLPATSFR RELLDIPKIVSSLQSAIQSIRVINTECTITFTVSPVRHLRNAAGDAIQSS RSKAQLLAAIHQVLDEDLLSPSSSPSVSPSSSPSSSLLSYFPAYEIMMDD LRDYRFYAPDMIHPSPVALEYIYSRFADAYLDFSPPSFLLRKDLETLRRN LQHRPLDRTSPAHQLFLKQQLIKMEGLQASWPHLDFEAERAVVRKGLVE* back to topmRNA from alignment at chr12:788700..790924+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02830.2 ID=NO12G02830.2|Name=NO12G02830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at chr12:788700..790924+ (Nannochloropsis oceanica) GTGTAGAGAGGTGAGTGGGGACGCGCGAAGAACACAGCTGTTTGAATTCA
GCGAATGGGTTGTCAACTTCGTACGTCCAAACTACTTGACCCACCGCCAC
AGTCAATTATAATTGCCGCCACCATGCACAGGACGAGGACCTGCACTTGA
GAGGATATCAAGGTGCGGACAACAAGGCCAGGGCTTGCAGGGGCAGTTCA
AAAGCCTCAATCATCATTCTCCACCCCTACCACATTAGTCCTCACTCCCT
GCTCACATTAGTCCTCACTCCCCCCAGTCCGTCTTGGTCCACCACATGCT
TATGGCAGCCTGTTCCCCACGCCGTCACACCTCCCTACCACGACTTCTCC
TGATCCCGCAGCTCTTCCTCTTTGCTTCCTCCTCTTCAGTGGCGCCATCA
TTTATCCTCGTCCCTCCATCACTTCTACCTCCCCATCGTGCTTTCGCCAT
CTTTAAGCCGCAGCCCAGCAGTTGGAGCAGCACCAGCAGCAGGCGCATTT
CATCTTCACTATCCCGAAATTCCTCCCCCTCCCTCTCCTCGTTCGACATA
CCCTTCCGTACCATCATTCCCGTTACTCCTCGCGTCTCTCACCGACGCGT
CTACCCCGCAGACCCTATTCTGTTCCTCGGCTCCTGCTTCTCAGACAATA
TGGGCGGGAAACTTAAAGAGAATCTAAAAATGAATGTGGAGATCAACCCC
TTTGGCACAGCATATAATCCGGTATCGATTTACCGGTGCTTGGAGCGCTT
GGCGACTGGGAGGCCATTTGAGGAGGAAGAGTTGGAGGAGCATCCCCAGG
ATGGACGGTGGTTCAGGTGAGAAAAGAGGGAGAGAAGAATTGCAGAGGCT
GGGCTGGAGAGAGAATGAAGGCGGATTGAATCCTCTCCTGATAGAGGCTG
CAAAAAATTAAATCCTTTAAACAAACCGAAAAACAAACAAATTTGGGAAA
TGAATAGACCAGTATGAAGGGCTTGGCATTGACTCACGCTCCAACTCATA
CTCCCGAGCCCCCCCCCATCCCCTCATCCTGCCCACACCACGTTAAGCTT
TGACCACCACACCAGCTTCAGTGCCCGTGATCCGAGTAAGGTCTTGTCGA
ATATTAACTCCCGCCTGGCTCAAGGCCACGTCTCATTAAAGCATGCCAAG
CATGTCTTTTTGACTCTGGGAACAGCACACGCGTATGTGCTTCTATCCAA
GGAGAGGAAGGGAAGGGAGAAAGGGGAAAAGAGGGTTGTGGCGAATTGCC
ATCGGTTGCCGGCGACGAGCTTTCGACGGGAATTGCTCGGTGCGAAAAAC
ACTTTTGAGACAAAATAAAGAACTTGTTTTTCTTAAGATGTAGTCGCCTT
CCCCTCATTCTGCCTCTGTATTTCACGCCCTCCTCTTAAGTTTCCATTCT
CACATTTACCATTTTCCTCTCCTGTCCCCTCTTCACGAACAGACATACCC
AAGATCGTCTCATCCCTCCAATCGGCCATTCAATCCATACGGGTCATCAA
CACAGAGTGCACTATCACCTTCACTGTCTCTCCTGTCAGACATCTCCGCA
ACGCCGCCGGGGACGCAAGTATGTAACGCTCTTGCCCTTGCCTTCACGTC
CTCCCGCTTCTCAATCTCGTCTTCCCATCCTCTTAACCCACACAATATGC
AACAGTTCAAAGCTCTCGCAGCAAAGCCCAACTTCTCGCTGCCATCCACC
AAGTCCTCGATGAAGACCTTCTTTCACCCTCCTCCTCTCCTTCCGTTTCC
CCCTCTTCCTCCCCTTCCTCCTCTCTCCTCTCCTATTTTCCCGCCTATGA
AATCATGATGGATGATCTGCGTGATTACCGTTTTTATGCCCCCGACATGA
TCCATCCCTCCCCTGTCGCACTCGAATACATCTACTCGCGCTTCGCCGAC
GCCTACCTAGACTTCTCCCCGCCTTCCTTTCTCCTTCGCAAAGACCTTGA
GACTTTACGACGCAACCTACAACACCGTCCGTTAGACAGGACAAGTCCGG
CGCACCAGCTATTCTTGAAGCAGCAGTTGATTAAAATGGAAGGGTTGCAA
GCCTCGTGGCCGCATTTGGACTTTGAAGCCGAGCGGGCAGTGGTCAGGAA
GGGATTGGTGGAGTGAAGCGAGAATTAGCTATGTCCATAGTGAGACAGGG
CAAATAGGAAATGTGCTCATAAAAGAAAATCATCAAATAAACTCAAAATA
TGACCAACATGGCAGGTAGCGAAGA back to topCoding sequence (CDS) from alignment at chr12:788700..790924+ >NO12G02830.2 ID=NO12G02830.2|Name=NO12G02830.2|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr12:788700..790924+ (Nannochloropsis oceanica) ATGCTTATGGCAGCCTGTTCCCCACGCCGTCACACCTCCCTACCACGACT TCTCCTGATCCCGCAGCTCTTCCTCTTTGCTTCCTCCTCTTCAGTGGCGC CATCATTTATCCTCGTCCCTCCATCACTTCTACCTCCCCATCGTGCTTTC GCCATCTTTAAGCCGCAGCCCAGCAGTTGGAGCAGCACCAGCAGCAGGCG CATTTCATCTTCACTATCCCGAAATTCCTCCCCCTCCCTCTCCTCGTTCG ACATACCCTTCCGTACCATCATTCCCGTTACTCCTCGCGTCTCTCACCGA CGCGTCTACCCCGCAGACCCTATTCTGTTCCTCGGCTCCTGCTTCTCAGA CAATATGGGCGGGAAACTTAAAGAGAATCTAAAAATGAATGTGGAGATCA ACCCCTTTGGCACAGCATATAATCCGGTATCGATTTACCGGTGCTTGGAG CGCTTGGCGACTGGGAGGCCATTTGAGGAGGAAGAGTTGGAGGAGCATCC CCAGGATGGACGGTGGTTCAGCTTTGACCACCACACCAGCTTCAGTGCCC GTGATCCGAGTAAGGTCTTGTCGAATATTAACTCCCGCCTGGCTCAAGGC CACGTCTCATTAAAGCATGCCAAGCATGTCTTTTTGACTCTGGGAACAGC ACACGCGTATGTGCTTCTATCCAAGGAGAGGAAGGGAAGGGAGAAAGGGG AAAAGAGGGTTGTGGCGAATTGCCATCGGTTGCCGGCGACGAGCTTTCGA CGGGAATTGCTCGACATACCCAAGATCGTCTCATCCCTCCAATCGGCCAT TCAATCCATACGGGTCATCAACACAGAGTGCACTATCACCTTCACTGTCT CTCCTGTCAGACATCTCCGCAACGCCGCCGGGGACGCAATTCAAAGCTCT CGCAGCAAAGCCCAACTTCTCGCTGCCATCCACCAAGTCCTCGATGAAGA CCTTCTTTCACCCTCCTCCTCTCCTTCCGTTTCCCCCTCTTCCTCCCCTT CCTCCTCTCTCCTCTCCTATTTTCCCGCCTATGAAATCATGATGGATGAT CTGCGTGATTACCGTTTTTATGCCCCCGACATGATCCATCCCTCCCCTGT CGCACTCGAATACATCTACTCGCGCTTCGCCGACGCCTACCTAGACTTCT CCCCGCCTTCCTTTCTCCTTCGCAAAGACCTTGAGACTTTACGACGCAAC CTACAACACCGTCCGTTAGACAGGACAAGTCCGGCGCACCAGCTATTCTT GAAGCAGCAGTTGATTAAAATGGAAGGGTTGCAAGCCTCGTGGCCGCATT TGGACTTTGAAGCCGAGCGGGCAGTGGTCAGGAAGGGATTGGTGGAGTGA back to top
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