NO12G01290.1, NO12G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01290.1
Unique NameNO12G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr12:409397..410455 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:409397..410455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G01290.1 vs.
Match: EWM25918.1 (histone-lysine n-methyltransferase setd1a [Nannochloropsis gaditana])

HSP 1 Score: 359.8 bits (922), Expect = 9.900e-96
Identity = 206/358 (57.54%), Postives = 250/358 (69.83%), Query Frame = 0 
Query:    1 MAPKKTAGGSAASAGEANGNSSTGGGTKRKADGSGTAVTALNSASVTAASCSSTGGGGSKKKKSTGVQKTLQAALSGECDTIALLKYLHEDIAEIRQQQVNEAAAAALAATAGPSTATATDHREQQDGAQVEEPDDGGSNKIPSTHRQRSAATTAAASHLESFLVGHKVDLFNAAGEMKSGRILRYDATKDQHFIALESTGVRKWVTLREESARISLEIIWGRIYGAPWWPGEIWCHTRKFLEGERPYPLVEGKLLVVFFAGNTHGWINPAGNLEGQIRLLMEEVDGEMMKKLENKKFAKDRTKIELALQEGKQEQQKIFELQDRAVAEAMKE--RVTAAVMGMGG----GVGGGRWP 353
            MAPKKT  G    A E N NS+ G GTKRKA+   T  T   +AS      SS    G KKKK  G QKTLQ ALSGECDT+ALLK LH+DI  +RQQ+  E     +  T GP         + + G Q    D+   + +    R+R  +     +HLESFLVGHKVDLFNAAGEMKSGRILRYDA KDQH +AL+ TGV++WVTLREESAR+SLE++WGRIYGAPWWPGE+WCHT KFL GE+PYPLVEGK+LVVFFAGNTHGWINP+ N+EGQ+RL++EEV+  M+KKL  K+F KD+ KIE AL EGK+EQ++I ELQD+A+ EA++E  R+ A    +GG    G GG R P
Sbjct:    1 MAPKKTGNG----ADEPNSNSNAGAGTKRKAEAINTRGTGQLAAS------SSPIHSGCKKKKMAGNQKTLQTALSGECDTLALLKSLHDDITNVRQQRTAET----VLPTNGPM--------DPERGYQEHSGDECRDSPV----RKREVSGPLVNAHLESFLVGHKVDLFNAAGEMKSGRILRYDARKDQHLLALQPTGVKRWVTLREESARVSLEVVWGRIYGAPWWPGEVWCHTTKFLGGEQPYPLVEGKVLVVFFAGNTHGWINPSQNVEGQMRLMVEEVEEAMLKKLGAKRFTKDKPKIEAALLEGKREQERIIELQDQALVEAVREGQRMEAVGGSLGGRGPAGKGGSRRP 332
The following BLAST results are available for this feature:
BLAST of NO12G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25918.19.900e-9657.54histone-lysine n-methyltransferase setd1a [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01290NO12G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01290.1NO12G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01290.1.cds1NO12G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01290.1 ID=NO12G01290.1|Name=NO12G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGGCACCCAAGAAGACAGCTGGAGGAAGTGCTGCTTCGGCTGGGGAAGC
CAACGGTAACTCTAGTACAGGCGGGGGCACCAAGCGCAAGGCTGATGGAA
GTGGTACCGCTGTCACTGCTTTAAATAGTGCCAGCGTAACTGCGGCCAGT
TGCAGTAGTACCGGTGGTGGTGGTAGTAAGAAGAAAAAGAGCACCGGGGT
ACAGAAGACACTCCAGGCGGCTCTCTCTGGGGAGTGTGACACGATTGCGT
TGCTCAAATACCTGCACGAGGACATTGCCGAGATCCGACAGCAACAAGTT
AACGAGGCAGCAGCAGCAGCACTCGCAGCTACTGCTGGTCCCTCCACCGC
CACTGCCACCGACCACCGAGAGCAACAGGATGGGGCTCAAGTAGAAGAAC
CCGACGACGGAGGCAGCAACAAAATCCCCTCCACTCACCGGCAACGTAGT
GCCGCCACCACCGCCGCTGCCTCGCATCTAGAATCATTCCTTGTCGGACA
CAAAGTTGATCTTTTTAATGCGGCTGGTGAGATGAAATCAGGTCGTATCT
TGCGATATGACGCAACGAAAGACCAACATTTTATAGCGCTGGAGTCCACA
GGGGTCAGAAAATGGGTGACTCTTAGAGAAGAATCCGCCCGAATATCTCT
TGAGATAATCTGGGGGAGGATTTACGGTGCCCCTTGGTGGCCTGGGGAGA
TCTGGTGCCACACGCGAAAGTTTTTAGAAGGGGAGCGCCCTTACCCCCTA
GTGGAGGGCAAATTGCTGGTCGTGTTTTTTGCGGGTAATACACACGGCTG
GATCAATCCAGCAGGCAATCTGGAGGGACAAATTCGGTTGTTGATGGAGG
AGGTGGACGGGGAGATGATGAAGAAACTGGAAAATAAGAAGTTTGCCAAG
GATAGAACGAAGATTGAGTTGGCCTTGCAGGAAGGGAAGCAGGAGCAGCA
GAAAATTTTTGAATTGCAGGATCGGGCGGTGGCGGAGGCGATGAAGGAAA
GAGTAACCGCTGCTGTTATGGGGATGGGAGGAGGAGTGGGGGGGGGAAGG
TGGCCGTAA
back to top

protein sequence of NO12G01290.1

>NO12G01290.1-protein ID=NO12G01290.1-protein|Name=NO12G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MAPKKTAGGSAASAGEANGNSSTGGGTKRKADGSGTAVTALNSASVTAAS
CSSTGGGGSKKKKSTGVQKTLQAALSGECDTIALLKYLHEDIAEIRQQQV
NEAAAAALAATAGPSTATATDHREQQDGAQVEEPDDGGSNKIPSTHRQRS
AATTAAASHLESFLVGHKVDLFNAAGEMKSGRILRYDATKDQHFIALEST
GVRKWVTLREESARISLEIIWGRIYGAPWWPGEIWCHTRKFLEGERPYPL
VEGKLLVVFFAGNTHGWINPAGNLEGQIRLLMEEVDGEMMKKLENKKFAK
DRTKIELALQEGKQEQQKIFELQDRAVAEAMKERVTAAVMGMGGGVGGGR
WP*
back to top

mRNA from alignment at chr12:409397..410455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01290.1 ID=NO12G01290.1|Name=NO12G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at chr12:409397..410455- (Nannochloropsis oceanica)
ATGGCACCCAAGAAGACAGCTGGAGGAAGTGCTGCTTCGGCTGGGGAAGC
CAACGGTAACTCTAGTACAGGCGGGGGCACCAAGCGCAAGGCTGATGGAA
GTGGTACCGCTGTCACTGCTTTAAATAGTGCCAGCGTAACTGCGGCCAGT
TGCAGTAGTACCGGTGGTGGTGGTAGTAAGAAGAAAAAGAGCACCGGGGT
ACAGAAGACACTCCAGGCGGCTCTCTCTGGGGAGTGTGACACGATTGCGT
TGCTCAAATACCTGCACGAGGACATTGCCGAGATCCGACAGCAACAAGTT
AACGAGGCAGCAGCAGCAGCACTCGCAGCTACTGCTGGTCCCTCCACCGC
CACTGCCACCGACCACCGAGAGCAACAGGATGGGGCTCAAGTAGAAGAAC
CCGACGACGGAGGCAGCAACAAAATCCCCTCCACTCACCGGCAACGTAGT
GCCGCCACCACCGCCGCTGCCTCGCATCTAGAATCATTCCTTGTCGGACA
CAAAGTTGATCTTTTTAATGCGGCTGGTGAGATGAAATCAGGTCGTATCT
TGCGATATGACGCAACGAAAGACCAACATTTTATAGCGCTGGAGTCCACA
GGGGTCAGAAAATGGGTGACTCTTAGAGAAGAATCCGCCCGAATATCTCT
TGAGATAATCTGGGGGAGGATTTACGGTGCCCCTTGGTGGCCTGGGGAGA
TCTGGTGCCACACGCGAAAGTTTTTAGAAGGGGAGCGCCCTTACCCCCTA
GTGGAGGGCAAATTGCTGGTCGTGTTTTTTGCGGGTAATACACACGGCTG
GATCAATCCAGCAGGCAATCTGGAGGGACAAATTCGGTTGTTGATGGAGG
AGGTGGACGGGGAGATGATGAAGAAACTGGAAAATAAGAAGTTTGCCAAG
GATAGAACGAAGATTGAGTTGGCCTTGCAGGAAGGGAAGCAGGAGCAGCA
GAAAATTTTTGAATTGCAGGATCGGGCGGTGGCGGAGGCGATGAAGGAAA
GAGTAACCGCTGCTGTTATGGGGATGGGAGGAGGAGTGGGGGGGGGAAGG
TGGCCGTAA
back to top

Coding sequence (CDS) from alignment at chr12:409397..410455-

>NO12G01290.1 ID=NO12G01290.1|Name=NO12G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr12:409397..410455- (Nannochloropsis oceanica)
ATGGCACCCAAGAAGACAGCTGGAGGAAGTGCTGCTTCGGCTGGGGAAGC
CAACGGTAACTCTAGTACAGGCGGGGGCACCAAGCGCAAGGCTGATGGAA
GTGGTACCGCTGTCACTGCTTTAAATAGTGCCAGCGTAACTGCGGCCAGT
TGCAGTAGTACCGGTGGTGGTGGTAGTAAGAAGAAAAAGAGCACCGGGGT
ACAGAAGACACTCCAGGCGGCTCTCTCTGGGGAGTGTGACACGATTGCGT
TGCTCAAATACCTGCACGAGGACATTGCCGAGATCCGACAGCAACAAGTT
AACGAGGCAGCAGCAGCAGCACTCGCAGCTACTGCTGGTCCCTCCACCGC
CACTGCCACCGACCACCGAGAGCAACAGGATGGGGCTCAAGTAGAAGAAC
CCGACGACGGAGGCAGCAACAAAATCCCCTCCACTCACCGGCAACGTAGT
GCCGCCACCACCGCCGCTGCCTCGCATCTAGAATCATTCCTTGTCGGACA
CAAAGTTGATCTTTTTAATGCGGCTGGTGAGATGAAATCAGGTCGTATCT
TGCGATATGACGCAACGAAAGACCAACATTTTATAGCGCTGGAGTCCACA
GGGGTCAGAAAATGGGTGACTCTTAGAGAAGAATCCGCCCGAATATCTCT
TGAGATAATCTGGGGGAGGATTTACGGTGCCCCTTGGTGGCCTGGGGAGA
TCTGGTGCCACACGCGAAAGTTTTTAGAAGGGGAGCGCCCTTACCCCCTA
GTGGAGGGCAAATTGCTGGTCGTGTTTTTTGCGGGTAATACACACGGCTG
GATCAATCCAGCAGGCAATCTGGAGGGACAAATTCGGTTGTTGATGGAGG
AGGTGGACGGGGAGATGATGAAGAAACTGGAAAATAAGAAGTTTGCCAAG
GATAGAACGAAGATTGAGTTGGCCTTGCAGGAAGGGAAGCAGGAGCAGCA
GAAAATTTTTGAATTGCAGGATCGGGCGGTGGCGGAGGCGATGAAGGAAA
GAGTAACCGCTGCTGTTATGGGGATGGGAGGAGGAGTGGGGGGGGGAAGG
TGGCCGTAA
back to top
Synonyms
Publications