NO12G01160.1, NO12G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01160.1
Unique NameNO12G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr12:366135..367370 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:366135..367370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01160.1 vs.
Match: EWM25915.1 (Vitamin K epoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 510.0 bits (1312), Expect = 6.900e-141
Identity = 267/402 (66.42%), Postives = 310/402 (77.11%), Query Frame = 0 
Query:   10 LLLLLCTPCSILAFMVQQPLRRHSLQACPPPLQPAASSSSHRTTARPLRLLQRCATPPTED-----NTITTITDSTDSSQAPLPSRDIDFSVGLWPKESRLLLALLGGLGFLETAYLTYQKLTTDDLTSLCTAVAGLSMKCGDVLNSEFASFLDVPLTLPGAVAYASATALALWPLMAGGENTRERAEADSSSRAPLLILTTAMATFSGYFMWVLATQIKELCPYCLASASLSFSMVGLTWSKNIEPNATKSVIYKGGAVAVTGLFSVAAFAYASAKILVMTQGGMEGGRGGGMSPPAITTHSTARSEALAVRLAGMDAKMYGAFWCSHCYEQKQAFGQESFYRHIKYIECAPDGAKSETKVCKTRKVPGYPTWEIKGDLYPGEKSLEQLEDIVEGRVAVPP 407
            LLLLLCTP    AF++             P ++  ++S SH           +   PP +D         +  D  D S A    RD+D SVG+WP+E+R LL LLGGLGFLETAYLTYQKLTTDDLTSLCT+VAGLSM+CGDVLNSE+ASFL VPLTLPGAVAY + TALALWP++AG E +RERAEAD +SRAPLL +TT MATFS Y MWVLATQ++ELCPYCLASASLSFSM  LTW K +EPNATKS++YK GAV VTGLFS+ AFAYASA+I+VM+QG  EGG  GG  PP ITTHSTARSEALA+RL  +DA+MYGAFWCSHCYEQKQ+ GQE+ YR I YIECAPDG  SE+K+CK RK+PGYPTWEIKG+LYPGEKSL+QLEDIV+G+V VPP
Sbjct:   12 LLLLLCTPTLHSAFVLNGR----------PCVRRLSNSVSHSKPIGDSIFPLKATIPPNDDAGSFKKNSGSREDGVDFSSAS--GRDVDLSVGVWPRENRQLLGLLGGLGFLETAYLTYQKLTTDDLTSLCTSVAGLSMRCGDVLNSEYASFLGVPLTLPGAVAYGTVTALALWPILAGNEGSRERAEADLNSRAPLLTVTTGMATFSAYLMWVLATQVRELCPYCLASASLSFSMAALTWVKQVEPNATKSLVYKAGAVVVTGLFSLGAFAYASARIMVMSQGPGEGGEVGGSRPPPITTHSTARSEALALRLQDLDARMYGAFWCSHCYEQKQSLGQEA-YRRIAYIECAPDGFASESKICKARKIPGYPTWEIKGELYPGEKSLDQLEDIVDGKVPVPP 400
The following BLAST results are available for this feature:
BLAST of NO12G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25915.16.900e-14166.42Vitamin K epoxide reductase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01160NO12G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01160.1NO12G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01160.1.cds1NO12G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01160.1 ID=NO12G01160.1|Name=NO12G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
ATGGGGACTACAGGGACCCTCGCCCTCCTCCTCCTCCTCCTCTGTACGCC
CTGCTCTATCCTGGCCTTCATGGTCCAGCAACCATTGCGACGGCACTCGC
TGCAAGCCTGTCCTCCACCATTACAACCAGCTGCATCGTCCTCCTCCCAC
CGCACTACTGCCCGCCCGCTCCGGCTCCTCCAACGTTGCGCCACTCCCCC
TACCGAAGACAACACCATTACCACCATCACAGATTCTACGGATTCATCAC
AAGCACCATTACCTTCCAGAGACATCGACTTCAGCGTTGGGCTCTGGCCG
AAGGAAAGCAGGCTACTCCTGGCCCTGCTCGGGGGCTTGGGGTTTCTCGA
AACAGCTTACCTCACCTATCAAAAGCTCACCACGGACGATCTAACTTCTC
TTTGTACGGCGGTGGCAGGCCTAAGTATGAAATGTGGCGATGTACTCAAC
TCAGAATTTGCGAGTTTTTTGGACGTGCCCTTGACACTGCCAGGGGCGGT
TGCTTATGCCTCCGCTACTGCACTAGCCCTGTGGCCGTTAATGGCCGGAG
GGGAGAATACTCGGGAGAGAGCAGAGGCAGACAGTAGTAGTAGAGCGCCG
TTGTTGATACTTACAACGGCGATGGCGACGTTTAGCGGGTATTTTATGTG
GGTCTTGGCGACGCAAATCAAGGAGCTTTGCCCTTATTGCCTGGCGAGTG
CTAGTTTATCGTTTAGCATGGTGGGGTTAACGTGGAGCAAAAATATCGAG
CCAAATGCAACAAAAAGTGTAATTTACAAGGGGGGGGCTGTCGCTGTGAC
AGGGTTGTTTTCCGTGGCGGCCTTCGCGTATGCTAGTGCCAAGATTTTGG
TCATGACGCAAGGGGGGATGGAGGGAGGGAGGGGAGGAGGGATGTCTCCA
CCAGCGATTACGACACATTCGACGGCAAGGAGCGAGGCCTTGGCAGTTCG
ATTGGCAGGGATGGACGCGAAGATGTACGGGGCATTCTGGTGCTCCCATT
GTTATGAGCAGAAACAGGCGTTCGGCCAGGAGAGTTTCTACAGGCACATT
AAGTATATCGAATGTGCGCCTGATGGAGCCAAGAGTGAGACGAAGGTGTG
CAAGACGAGGAAGGTTCCTGGCTATCCGACGTGGGAAATCAAGGGGGACT
TGTACCCAGGGGAAAAGAGTTTAGAGCAGCTGGAGGATATCGTGGAGGGA
CGCGTGGCAGTGCCTCCTTTGGTGTTACCGAAATGA
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protein sequence of NO12G01160.1

>NO12G01160.1-protein ID=NO12G01160.1-protein|Name=NO12G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MGTTGTLALLLLLLCTPCSILAFMVQQPLRRHSLQACPPPLQPAASSSSH
RTTARPLRLLQRCATPPTEDNTITTITDSTDSSQAPLPSRDIDFSVGLWP
KESRLLLALLGGLGFLETAYLTYQKLTTDDLTSLCTAVAGLSMKCGDVLN
SEFASFLDVPLTLPGAVAYASATALALWPLMAGGENTRERAEADSSSRAP
LLILTTAMATFSGYFMWVLATQIKELCPYCLASASLSFSMVGLTWSKNIE
PNATKSVIYKGGAVAVTGLFSVAAFAYASAKILVMTQGGMEGGRGGGMSP
PAITTHSTARSEALAVRLAGMDAKMYGAFWCSHCYEQKQAFGQESFYRHI
KYIECAPDGAKSETKVCKTRKVPGYPTWEIKGDLYPGEKSLEQLEDIVEG
RVAVPPLVLPK*
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mRNA from alignment at chr12:366135..367370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01160.1 ID=NO12G01160.1|Name=NO12G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at chr12:366135..367370+ (Nannochloropsis oceanica)
ATGGGGACTACAGGGACCCTCGCCCTCCTCCTCCTCCTCCTCTGTACGCC
CTGCTCTATCCTGGCCTTCATGGTCCAGCAACCATTGCGACGGCACTCGC
TGCAAGCCTGTCCTCCACCATTACAACCAGCTGCATCGTCCTCCTCCCAC
CGCACTACTGCCCGCCCGCTCCGGCTCCTCCAACGTTGCGCCACTCCCCC
TACCGAAGACAACACCATTACCACCATCACAGATTCTACGGATTCATCAC
AAGCACCATTACCTTCCAGAGACATCGACTTCAGCGTTGGGCTCTGGCCG
AAGGAAAGCAGGCTACTCCTGGCCCTGCTCGGGGGCTTGGGGTTTCTCGA
AACAGCTTACCTCACCTATCAAAAGCTCACCACGGACGATCTAACTTCTC
TTTGTACGGCGGTGGCAGGCCTAAGTATGAAATGTGGCGATGTACTCAAC
TCAGAATTTGCGAGTTTTTTGGACGTGCCCTTGACACTGCCAGGGGCGGT
TGCTTATGCCTCCGCTACTGCACTAGCCCTGTGGCCGTTAATGGCCGGAG
GGGAGAATACTCGGGAGAGAGCAGAGGCAGACAGTAGTAGTAGAGCGCCG
TTGTTGATACTTACAACGGCGATGGCGACGTTTAGCGGGTATTTTATGTG
GGTCTTGGCGACGCAAATCAAGGAGCTTTGCCCTTATTGCCTGGCGAGTG
CTAGTTTATCGTTTAGCATGGTGGGGTTAACGTGGAGCAAAAATATCGAG
CCAAATGCAACAAAAAGTGTAATTTACAAGGGGGGGGCTGTCGCTGTGAC
AGGGTTGTTTTCCGTGGCGGCCTTCGCGTATGCTAGTGCCAAGATTTTGG
TCATGACGCAAGGGGGGATGGAGGGAGGGAGGGGAGGAGGGATGTCTCCA
CCAGCGATTACGACACATTCGACGGCAAGGAGCGAGGCCTTGGCAGTTCG
ATTGGCAGGGATGGACGCGAAGATGTACGGGGCATTCTGGTGCTCCCATT
GTTATGAGCAGAAACAGGCGTTCGGCCAGGAGAGTTTCTACAGGCACATT
AAGTATATCGAATGTGCGCCTGATGGAGCCAAGAGTGAGACGAAGGTGTG
CAAGACGAGGAAGGTTCCTGGCTATCCGACGTGGGAAATCAAGGGGGACT
TGTACCCAGGGGAAAAGAGTTTAGAGCAGCTGGAGGATATCGTGGAGGGA
CGCGTGGCAGTGCCTCCTTTGGTGTTACCGAAATGA
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Coding sequence (CDS) from alignment at chr12:366135..367370+

>NO12G01160.1 ID=NO12G01160.1|Name=NO12G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr12:366135..367370+ (Nannochloropsis oceanica)
ATGGGGACTACAGGGACCCTCGCCCTCCTCCTCCTCCTCCTCTGTACGCC
CTGCTCTATCCTGGCCTTCATGGTCCAGCAACCATTGCGACGGCACTCGC
TGCAAGCCTGTCCTCCACCATTACAACCAGCTGCATCGTCCTCCTCCCAC
CGCACTACTGCCCGCCCGCTCCGGCTCCTCCAACGTTGCGCCACTCCCCC
TACCGAAGACAACACCATTACCACCATCACAGATTCTACGGATTCATCAC
AAGCACCATTACCTTCCAGAGACATCGACTTCAGCGTTGGGCTCTGGCCG
AAGGAAAGCAGGCTACTCCTGGCCCTGCTCGGGGGCTTGGGGTTTCTCGA
AACAGCTTACCTCACCTATCAAAAGCTCACCACGGACGATCTAACTTCTC
TTTGTACGGCGGTGGCAGGCCTAAGTATGAAATGTGGCGATGTACTCAAC
TCAGAATTTGCGAGTTTTTTGGACGTGCCCTTGACACTGCCAGGGGCGGT
TGCTTATGCCTCCGCTACTGCACTAGCCCTGTGGCCGTTAATGGCCGGAG
GGGAGAATACTCGGGAGAGAGCAGAGGCAGACAGTAGTAGTAGAGCGCCG
TTGTTGATACTTACAACGGCGATGGCGACGTTTAGCGGGTATTTTATGTG
GGTCTTGGCGACGCAAATCAAGGAGCTTTGCCCTTATTGCCTGGCGAGTG
CTAGTTTATCGTTTAGCATGGTGGGGTTAACGTGGAGCAAAAATATCGAG
CCAAATGCAACAAAAAGTGTAATTTACAAGGGGGGGGCTGTCGCTGTGAC
AGGGTTGTTTTCCGTGGCGGCCTTCGCGTATGCTAGTGCCAAGATTTTGG
TCATGACGCAAGGGGGGATGGAGGGAGGGAGGGGAGGAGGGATGTCTCCA
CCAGCGATTACGACACATTCGACGGCAAGGAGCGAGGCCTTGGCAGTTCG
ATTGGCAGGGATGGACGCGAAGATGTACGGGGCATTCTGGTGCTCCCATT
GTTATGAGCAGAAACAGGCGTTCGGCCAGGAGAGTTTCTACAGGCACATT
AAGTATATCGAATGTGCGCCTGATGGAGCCAAGAGTGAGACGAAGGTGTG
CAAGACGAGGAAGGTTCCTGGCTATCCGACGTGGGAAATCAAGGGGGACT
TGTACCCAGGGGAAAAGAGTTTAGAGCAGCTGGAGGATATCGTGGAGGGA
CGCGTGGCAGTGCCTCCTTTGGTGTTACCGAAATGA
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Synonyms
Publications