Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr10 genome chr10:1196972..1201195 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G04020.4 vs.
Match: CBN77749.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 494.6 bits (1272), Expect = 3.500e-136
Identity = 247/439 (56.26%), Postives = 313/439 (71.30%), Query Frame = 0
Query: 3 SSSSTASTSGGSVGDASAAAKYDAFVKWLLDNGARFPGLELREYEAEVRGVHAKEELEGDQVVVEIPLK---------------------------CLITVEMGKGTEIGKAVVASDLPLDAPKHIFLMLFVLTDRHNPTSFFKPYYDILPSSLSNMPIFWTQNELAYLQGSYLLTQIDERKRAIEADYAAIADVAPSLPSVCSVEDFKWARMCVCSRNFGLEVNRVRTAALVPYADMLNHYRPRETKWAFDNGRQAFTITTLQRIAPGAQVFDSYGQKCNHRFLLNYGFAVENNREADGFCPNEVPLDFALRETDPLYSRKLPCWSRDGQSKVKRLRLCVADNENMRAAFSLLRVMVANEEELVRMLGPGNMFKTARDITYPVSLRNEERVLQTLLAKLTDALSAYPTRLEDDQAALACQDDPSLRPFSNRRHALIQV 415
+ ++ AS + + D AK AF +WLL+NGARFP LE+R Y+ EVRGVHA+ E++ D+V+VEIPLK CL+TVEMGK +G+AV+AS + DAPKHIFLMLF+LTD P +FF+PYYD+LP++LSNMPIFWT+ E+ LQGSYL+TQ++ER +AIE DY I D+ P V ++E+FKWARMCVCSRNFGL++N +RT+ALVPYADMLNHYRPRETKW +DN R FTITTL RI GAQV+DSYGQKCNHRFLLNYGFA+ENN+EA+GFCPNEVPL F L DPL +K W DG + +R+RLCV D + +R A S+LRV+VA+ E+ G M++T +D+ +P+S+RNE ++ LL T AL AYPT LE+D+AAL + L PFSNRRHALIQV
Sbjct: 55 AGAAEASVAEVNPDDPDHDAKVVAFERWLLENGARFPRLEIRRYDPEVRGVHARGEIDPDEVIVEIPLKNKKQRRKRPTGWSLQKPEKDGSASWRRCLVTVEMGKALPVGQAVLASGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLSNMPIFWTEEEMRLLQGSYLVTQVEERNQAIEGDYGVICDLYPPFRDVATLEEFKWARMCVCSRNFGLDINGLRTSALVPYADMLNHYRPRETKWTYDNNRGGFTITTLHRILGGAQVYDSYGQKCNHRFLLNYGFAIENNQEANGFCPNEVPLLFRLDARDPLRQKKARFWRMDGPEQ-RRVRLCVGDTDAVRGALSMLRVIVADAAEM----GARYMYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAAL---KNGGLEPFSNRRHALIQV 485
The following BLAST results are available for this feature:
BLAST of NO10G04020.4 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 3.50e-136 / Id = 56.26 Sequence CBN77749.1
Match Name E-value Identity Description
CBN77749.1 3.500e-136 56.26 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO10G04020.4 ID=NO10G04020.4|Name=NO10G04020.4|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp AGGTTTGCGGGTGGAAAAAGCTTCTTCACATTCCTCGCTCCTTCACCCGA CGGCATCATACGTTCAGCGTTAAGCCCTGCTCTAGAGTTGGGGCTGCACG CAGACAGAAAAAAGACAATGCAGTCCAGCAGTAGCACTGCCAGCACCAGC GGCGGCAGTGTGGGCGACGCTTCCGCCGCTGCTAAGTACGATGCTTTTGT CAAGTGGCTCTTGGATAATGGCGCTCGTTTCCCAGGGCTTGAGTTGCGGG AATACGAGGCCGAAGTCCGCGGCGTGCACGCCAAGGAAGAGCTGGAAGGG GACCAAGTGGTGGTGGAAATTCCTCTCAAGTGCCTCATTACCGTAGAGAT GGGCAAAGGAACGGAGATCGGCAAGGCTGTCGTGGCCTCGGATTTGCCCT TGGATGCGCCTAAGCACATCTTCCTCATGCTATTCGTGCTGACGGACCGA CACAACCCCACCTCGTTTTTCAAGCCGTACTACGATATTTTGCCTTCCTC CCTCTCCAATATGCCCATCTTCTGGACCCAGAACGAACTCGCCTACCTCC AAGGCTCGTACCTCCTGACCCAGATCGACGAGCGGAAGCGGGCCATTGAG GCTGACTACGCCGCCATCGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTG CTCCGTGGAGGACTTCAAATGGGCCAGGATGTGCGTGTGTTCGCGCAATT TTGGCCTCGAGGTGAACAGGGTCAGGACGGCGGCCCTCGTGCCCTACGCA GACATGCTCAACCACTACCGTCCTCGTGAGACCAAGTGGGCCTTTGACAA CGGCCGTCAAGCATTCACCATCACCACGCTGCAGCGCATCGCACCGGGCG CGCAGGTCTTTGACTCCTACGGACAGAAGTGCAACCACCGCTTTCTCCTC AACTACGGGTTCGCCGTAGAGAACAACAGGGAGGCTGACGGCTTCTGTCC CAACGAGGTGCCCCTGGACTTTGCCCTCCGTGAGACCGACCCTCTCTATA GCCGAAAGCTGCCATGTTGGAGCCGCGACGGGCAGAGCAAGGTGAAGCGG CTACGGCTCTGTGTCGCGGACAATGAGAATATGCGCGCGGCATTCTCCTT GCTAAGAGTAATGGTGGCTAATGAGGAGGAGTTGGTGCGGATGCTGGGCC CGGGAAACATGTTCAAAACGGCCCGGGACATCACCTACCCCGTCAGCCTC CGCAACGAGGAACGAGTCCTGCAGACCCTCCTCGCCAAATTGACAGACGC TCTGTCCGCCTACCCCACCCGCCTCGAAGATGACCAAGCAGCGTTGGCTT GCCAGGACGATCCCTCCCTCCGTCCCTTCTCCAATAGGCGCCACGCCCTG ATACAGGTAGGGAGGGCGGGTGGAAGGGAAGGAGAGAAGGAGGGGGATTA CGAGACTGATGGGGTAGAAAGAAGTTTTGCAGCGTCGTATCACTCACGTC TCCCTCATCCTTCCCCCTCTCCTTCTTTCCCTCCTCCCGCCTTCAGGTGC GCGGCGAGAAGGAAGTGCTGTCAGCGTTCCGGGCCCTGTGTGCCACTGCC TTGACGCTTTTGGAGGTCAGCGACGCGGTTTTCAAGGTGAATCAGGGAGG GAGGGGAAAAGGCGGGAAGGGAGACGTACCCACAGGTTGTTCAAGGTTCT TCTCGTTTCCTTGGCTCATTGTCCAGTGCCTTCAGAGCAAGGAAAGAAAA GGTATCTCTTACATCTCGTCCCCCACCCTCCCTCCCGCCCTCCCTCTCCT TTCTTCTTCATTCCTCTCTCATCCAGGAGGCGGTCAATGGCCTGTACAGC GAGAGCAACTTTTTTACCGCTAACTACTGCTCGGACATCCTCTACCGGCT ACGACAGGTAAGGACGAGGGAGGGAGGGAGGCAAGAGGGAAGGAGGACAC GATCTCTAAGGACCATATTTCCAACTTTTATTTATCTCCCCTTCTCCTTC TTTGCCTTGTCGTCTCCTTGTTGTCACCCAGGAGGAGCAACGCCGGTTAG GGGCGGCAGCAGCGCAAAGAGCTGAAAGAGTGAATCTTTCCAAACCCACC ATTGTCTAAGGGTGAAAAGTAGGAGAACGGCCGGAAGCGGAAGAGGGAGA AAGAGGATTGTACAATTTAAAGTGTTTACAAACCTTAAATCTGGCACATT ATTGCCGTGCGTGTGTGAGTGGGTGGCATATATGTGATGAGAGAGGAGCA AGTGCGCCTAGCGGCATAAGGAAGGGAAGCGAATCAGACAAAGATAATAC GCGAGGGGGAAAACATTAGCAATCAACAGCAAATACCT back to top protein sequence of NO10G04020.4
>NO10G04020.4-protein ID=NO10G04020.4-protein|Name=NO10G04020.4|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp MQSSSSTASTSGGSVGDASAAAKYDAFVKWLLDNGARFPGLELREYEAEV RGVHAKEELEGDQVVVEIPLKCLITVEMGKGTEIGKAVVASDLPLDAPKH IFLMLFVLTDRHNPTSFFKPYYDILPSSLSNMPIFWTQNELAYLQGSYLL TQIDERKRAIEADYAAIADVAPSLPSVCSVEDFKWARMCVCSRNFGLEVN RVRTAALVPYADMLNHYRPRETKWAFDNGRQAFTITTLQRIAPGAQVFDS YGQKCNHRFLLNYGFAVENNREADGFCPNEVPLDFALRETDPLYSRKLPC WSRDGQSKVKRLRLCVADNENMRAAFSLLRVMVANEEELVRMLGPGNMFK TARDITYPVSLRNEERVLQTLLAKLTDALSAYPTRLEDDQAALACQDDPS LRPFSNRRHALIQVGRAGGREGEKEGDYETDGVERSFAASYHSRLPHPSP SPSFPPPAFRCAARRKCCQRSGPCVPLP* back to top mRNA from alignment at chr10:1196972..1201195-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G04020.4 ID=NO10G04020.4|Name=NO10G04020.4|organism=Nannochloropsis oceanica|type=mRNA|length=4224bp|location=Sequence derived from alignment at chr10:1196972..1201195- (Nannochloropsis oceanica) AGGTTTGCGGGTGGAAAAAGCTTCTTCACATTCCTCGCTCCTTCACCCGA
CGGCATCATACGTTCAGCGTTAAGCCCTGCTCTAGAGTTGGGGCTGCACG
CAGACAGAAAAAAGACAATGCAGTCCAGCAGTAGCACTGCCAGCACCAGC
GGCGGCAGTGTGGGCG GTGCGTGCGTGTGTAGATGAGGTTGAAGGGGGAG
ACAGAGGCAGATGGGCGAAAAAGGGGCAAGCGTGTTGCTTATGGATGTCC
CCATCTCCTCACCCTTACCAGCACCATAGTCCGGTCAAATACAGCGCCTC
AATGGCACGTTCAGCTTAGCATGTCATTTTTCTCCTTACAATCCCTCTAT
TCCTTTCCTTTGTCCCTTCCTTCCTCAGACGCTTCCGCCGCTGCTAAGTA
CGATGCTTTTGTCAAGTGGCTCTTGGATAATGGCGCTCGTTTCCCAGGGC
TTGAGTTGCGG GTGCGTGATGTGACGGGATGGGACGAGGGGATGAAGAGG
AACGAAGAGGGGAGGGGGTAGATACGAATGTCCGCCCATCGCACAAACTC
ATTCCTTCCCGCGTTGCTTGCTGTGCTCCCTCCCCTCTCCTCTTTCTTCC
CTCCTCCCTCCTGTCTACTCACTCCCAGGAATACGAGGCCGAAGTCCGCG
GCGTGCACGCCAAGGAAGAGCTGGAAGGGGACCAAGTGGTGGTGGAAATT
CCTCTCAAGTGCCTCATTACCGTAGAGATGGGCAAAGGAACGGAGATCGG
CAAGGCTGTCGTGGCCTCGGATTTGCCCTTGGATGCGCCTAAGCACATCT
TCCTCATGCTATTCGTGCTGACGGACCGACACAACCCCACCTCGTTTTTC
AAG GTAGGAAGGGGAGGGAGGGAGGGAGAAAAGGAGAGAAGAAGCGGTAG
ACCTGCGGGTTGCCATCCATCTGCGTGCGGACACGCCCCAAGTGGATGGG
TTTCGATGCTCTTTGTATGCCATGACCGACTTGAGCCCGACTCTGTTCCA
CGTGAAGTTGTCCTTCTCCCCCATCTCTCTCCTTCCCTTCCTCCATCCCT
TTCGTCCTTCTCCCAACCCCCTCTTTCCGTCGTCGCTTGGGTATTCACCT
TGTGAATGTCTTCCTTCTCTGACCCTCCCCCCCTTCTCCCCTTTCCTTCT
CCTCCCCTTCCTTCCATTCCTTTCTCCAGCCGTACTACGATATTTTGCCT
TCCTCCCTCTCCAATATGCCCATCTTCTGGACCCAGAACGAACTCGCCTA
CCTCCAAG GTAGGGAGGGAGGACGCGAGGGAGGGAGGGAGGACGCGGGTG
CGGGGGTGGGAGGGAAGGAGGGGGTCATGGTCTGATGGGAAGGAAGAAAG
CAGTGAGCAAGAGAGTAGCATTCCTCATCTCAAATCTGATCTATCCCTCC
CTCCCTCTTTCCCTTCCTTATTTCCTCCTTCCTTCCCCTTCCTGAAGGCT
CGTACCTCCTGACCCAGATCGACGAGCGGAAGCGGGCCATTGAGGCTGAC
TACGCCGCCATCGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTGCTCCGT
GGAGGACTTCAAATGGGCCAGGATGTGCGTGTGTTCGCGCAATTTTGGCC
TCGAGGTGAACAGGGTCAGGACGGCGGCCCTCGTGCCCTACGCAG GTACA
CCATAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCT
CCCTCCTCCCCTTGTACTCTCCGCACCATTTGTGGACCGACCACTCCCTC
CAACCCTTTCTCTCTCCCTCTCTCCCTCTACCAGACATGCTCAACCACTA
CCGTCCTCGTGAGACCAAGTGGGCCTTTGACAACGGCCGTCAAGCATTCA
CCATCACCACGCTGCAGCGCATCGCACCGGGCGCGCAG GTAGACCATGTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCTTCTTTCCCATACATGGCCTCTGACCCTCCGCACATCTTCTCCCCAC
TCGTTTTCCCTCCCTCCTTCCCTCCCTCCTCTCCTCCTACCAGGTCTTTG
ACTCCTACGGACAGAAGTGCAACCACCGCTTTCTCCTCAACTACGGGTTC
GCCGTAGAGAACAACAGGGAGGCTGACGGCTTCTGTCCCAACGAG GTGGG
GGGGGGAGAAAGGAAAGAAGGGATGAGAAAAGGGAGGGAGGGAGGGAGGG
AATCCACATGCTTACCCCAAGCCTTGGTCTTCACTCCCTCGCTCCCTCCC
TCCCTCCCTTCGCAGGTGCCCCTGGACTTTGCCCTCCGTGAGACCGACCC
TCTCTATAGCCGAAAGCTGCCATGTTGGAGCCGCGACGGGCAGAGCAAG G
TAGAGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAAAGG
GCCTTCACACACACCCCCTCACTTCCACTGCCTTAGTCTCTCGCAAGACC
TTACCACCCACCATCACCTTACCCCTTACTACGTCATCATGTCATCGTCC
TCTAACATATCACCATCACCTTACCCCTTATCACGTCATTATGTCACCGT
CCTCTAACATATCACCATCACCTTACCCCTAACCACAAGGTGAAGCGGCT
ACGGCTCTGTGTCGCGGACAATGAGAATATGCGCGCGGCATTCTCCTTGC
TAAG GTACCTCCCTCACTCCCTCCGTCCTTGCCTCCCTTTCTACCACTCT
CTTCTACTTCGACTTACCCATCACTCCCCCCCGTCGTCGACCTTCCTCTT
CTCCCTCCTCACTTCTCCTCTCTTCTCGTCCTCCCTCCCCCTCTCCCTCC
CCCCTCCTCCCAGAGTAATGGTGGCTAATGAGGAGGAGTTGGTGCGGATG
CTGGGCCCGGGAAACATGTTCAAAACGGCCCGGGACATCACCTACCCCGT
CAG GTGGGGAGGGAGGGAGGGAGGAAGGGATGGAGGGAGGGAGGGAAAGA
GATGCTTAAAGCACGGGGACGGCAGCTTTGTCTGCTGTCTCAAGAAGAGG
GGAGGAAGAGAGGGAGAGGCGGGAAGGATAAGAGAACAGGGCTGAAAGGT
GATCCGCTTCCGCACACTTACCCACTCTCCGTCCCTCTCACCCTCTGTCC
CTCTCACCCTCCTTCCCTCCCTCTCCCTCCAGCCTCCGCAACGAGGAACG
AGTCCTGCAGACCCTCCTCGCCAAATTGACAGACGCTCTGTCCGCCTACC
CCACCCGCCTCGAAGATGACCAAGCAGCGTTGGCTTGCCAGGACGATCCC
TCCCTCCGTCCCTTCTCCAATAGGCGCCACGCCCTGATACAGGTAGGGAG
GGCGGGTGGAAGGGAAGGAGAGAAGGAGGGGGATTACGAGACTGATGGGG
TAGAAAGAAGTTTTGCAGCGTCGTATCACTCACGTCTCCCTCATCCTTCC
CCCTCTCCTTCTTTCCCTCCTCCCGCCTTCAGGTGCGCGGCGAGAAGGAA
GTGCTGTCAGCGTTCCGGGCCCTGTGTGCCACTGCCTTGA CGCTTTTGGA
GGTCAGCGACGCGGTTTTCAAGGTGAATCAGGGAGGGAGGGGAAAAGGCG
GGAAGGGAGACGTACCCACAGGTTGTTCAAGGTTCTTCTCGTTTCCTTGG
CTCATTGTCCAGTGCCTTCAGAGCAAGGAAAGAAAAGGTATCTCTTACAT
CTCGTCCCCCACCCTCCCTCCCGCCCTCCCTCTCCTTTCTTCTTCATTCC
TCTCTCATCCAGGAGGCGGTCAATGGCCTGTACAGCGAGAGCAACTTTTT
TACCGCTAACTACTGCTCGGACATCCTCTACCGGCTACGACAGGTAAGGA
CGAGGGAGGGAGGGAGGCAAGAGGGAAGGAGGACACGATCTCTAAGGACC
ATATTTCCAACTTTTATTTATCTCCCCTTCTCCTTCTTTGCCTTGTCGTC
TCCTTGTTGTCACCCAGGAGGAGCAACGCCGGTTAGGGGCGGCAGCAGCG
CAAAGAGCTGAAAGAGTGAATCTTTCCAAACCCACCATTGTCTAAGGGTG
AAAAGTAGGAGAACGGCCGGAAGCGGAAGAGGGAGAAAGAGGATTGTACA
ATTTAAAGTGTTTACAAACCTTAAATCTGGCACATTATTGCCGTGCGTGT
GTGAGTGGGTGGCATATATGTGATGAGAGAGGAGCAAGTGCGCCTAGCGG
CATAAGGAAGGGAAGCGAATCAGACAAAGATAATACGCGAGGGGGAAAAC
ATTAGCAATCAACAGCAAATACCT back to top Coding sequence (CDS) from alignment at chr10:1196972..1201195-
>NO10G04020.4 ID=NO10G04020.4|Name=NO10G04020.4|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr10:1196972..1201195- (Nannochloropsis oceanica) ATGCAGTCCAGCAGTAGCACTGCCAGCACCAGCGGCGGCAGTGTGGGCGA CGCTTCCGCCGCTGCTAAGTACGATGCTTTTGTCAAGTGGCTCTTGGATA ATGGCGCTCGTTTCCCAGGGCTTGAGTTGCGGGAATACGAGGCCGAAGTC CGCGGCGTGCACGCCAAGGAAGAGCTGGAAGGGGACCAAGTGGTGGTGGA AATTCCTCTCAAGTGCCTCATTACCGTAGAGATGGGCAAAGGAACGGAGA TCGGCAAGGCTGTCGTGGCCTCGGATTTGCCCTTGGATGCGCCTAAGCAC ATCTTCCTCATGCTATTCGTGCTGACGGACCGACACAACCCCACCTCGTT TTTCAAGCCGTACTACGATATTTTGCCTTCCTCCCTCTCCAATATGCCCA TCTTCTGGACCCAGAACGAACTCGCCTACCTCCAAGGCTCGTACCTCCTG ACCCAGATCGACGAGCGGAAGCGGGCCATTGAGGCTGACTACGCCGCCAT CGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTGCTCCGTGGAGGACTTCA AATGGGCCAGGATGTGCGTGTGTTCGCGCAATTTTGGCCTCGAGGTGAAC AGGGTCAGGACGGCGGCCCTCGTGCCCTACGCAGACATGCTCAACCACTA CCGTCCTCGTGAGACCAAGTGGGCCTTTGACAACGGCCGTCAAGCATTCA CCATCACCACGCTGCAGCGCATCGCACCGGGCGCGCAGGTCTTTGACTCC TACGGACAGAAGTGCAACCACCGCTTTCTCCTCAACTACGGGTTCGCCGT AGAGAACAACAGGGAGGCTGACGGCTTCTGTCCCAACGAGGTGCCCCTGG ACTTTGCCCTCCGTGAGACCGACCCTCTCTATAGCCGAAAGCTGCCATGT TGGAGCCGCGACGGGCAGAGCAAGGTGAAGCGGCTACGGCTCTGTGTCGC GGACAATGAGAATATGCGCGCGGCATTCTCCTTGCTAAGAGTAATGGTGG CTAATGAGGAGGAGTTGGTGCGGATGCTGGGCCCGGGAAACATGTTCAAA ACGGCCCGGGACATCACCTACCCCGTCAGCCTCCGCAACGAGGAACGAGT CCTGCAGACCCTCCTCGCCAAATTGACAGACGCTCTGTCCGCCTACCCCA CCCGCCTCGAAGATGACCAAGCAGCGTTGGCTTGCCAGGACGATCCCTCC CTCCGTCCCTTCTCCAATAGGCGCCACGCCCTGATACAGGTAGGGAGGGC GGGTGGAAGGGAAGGAGAGAAGGAGGGGGATTACGAGACTGATGGGGTAG AAAGAAGTTTTGCAGCGTCGTATCACTCACGTCTCCCTCATCCTTCCCCC TCTCCTTCTTTCCCTCCTCCCGCCTTCAGGTGCGCGGCGAGAAGGAAGTG CTGTCAGCGTTCCGGGCCCTGTGTGCCACTGCCTTGA back to top