NO10G00610.1, NO10G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00610.1
Unique NameNO10G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr10:204659..207419 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:204659..207419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00610.1 vs.
Match: EWM25293.1 (calcium calmodulin-dependent protein kinase ii [Nannochloropsis gaditana])

HSP 1 Score: 458.0 bits (1177), Expect = 3.200e-125
Identity = 240/382 (62.83%), Postives = 285/382 (74.61%), Query Frame = 0 
Query:   25 IAYGALLASYLFLHTDDANEDGTDQ------HSAFQQQQTQQQHSFALLRHILRPVPADCFFFQRKSSNQDIDTTPSPTNMPEVTINPASFHSMYEIGPPIGTGAFALVYKCTQKNDSGRPAAVKVFDLSKVPKGKQATARERIYNEVAILQSLKHDRIVKAYDFFESSTDSCSYLVMEFCQGGELFERIVAKTTYNEKEARDVIRMLLSALAFCHDEAKVVHRDLKPENLLLESTTCDLQIKLADFGTASRIQTPDSLTRYCGTPSYTAPEILSRKKYGCKVDMWSAGIIAYILLGGYPPFADNQDQIKKKHTVLFHSPEWDKVSPEAKSLISHLLLVDPRRRLSATEALSHKWFSKEEEELEERELKEARDGIRKFNALR 401
            +A GALLA+Y FL  D+ +ED  D+      H+   Q Q +         +++  V A C      S+ + +DT P+ T    VT N A F S+Y++GP +GTGAFA+VYKCT K+ S   AAVKVFDLS+VP  KQA  R  I+ E  ILQSL+HDRIV+ YD FE+ T +  Y+VMEFCQGGELFERIVAKTTYNEKEARDVIR LL+ALAFCH++A VVHRDLKPENLLLES T DL IK+ADFG A  I   D L+ YCGTPSYTAPEIL+R+KYG KVD+WSAGIIAYILLGGYPPFADNQDQ++K+HT  FHSPEWD VSPEAK LIS LL  DP++RLSA EAL+H WF KE+EELE+REL  A++GI KFNALR
Sbjct:   25 VAGGALLAAY-FLDPDERSEDDVDELPLPSFHNKLLQNQNRSNRHILPPSNLIHSVTAGCL-----SAKKSLDTHPTGTEGTLVT-NAAHFESLYQLGPKLGTGAFAVVYKCTPKSTSSNVAAVKVFDLSRVPAKKQARIRADIHKEYTILQSLQHDRIVQVYDLFEAPTQNKVYVVMEFCQGGELFERIVAKTTYNEKEARDVIRTLLTALAFCHEDAGVVHRDLKPENLLLESETDDLHIKVADFGAACLITESDCLSHYCGTPSYTAPEILARQKYGPKVDVWSAGIIAYILLGGYPPFADNQDQLRKRHTFYFHSPEWDAVSPEAKDLISRLLHRDPQQRLSAREALAHAWFEKEKEELEDRELPAAKEGIEKFNALR 399
The following BLAST results are available for this feature:
BLAST of NO10G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25293.13.200e-12562.83calcium calmodulin-dependent protein kinase ii [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00610NO10G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00610.1NO10G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00610.1.cds1NO10G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00610.1.cds2NO10G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00610.1.cds3NO10G00610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00610.1.cds4NO10G00610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00610.1.cds5NO10G00610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00610.1.cds6NO10G00610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00610.1 ID=NO10G00610.1|Name=NO10G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
ATGGCTGCCTCGTCTACTTCCCTCGCCACGTCTCGGCATGGCATAACCAC
GGCGAGCGTAGCTCCGATTGGGATTGCATATGGCGCTCTTCTCGCTTCGT
ATTTGTTCCTCCACACGGATGACGCTAACGAGGATGGCACGGACCAGCAC
TCTGCCTTTCAACAGCAGCAAACCCAGCAGCAGCATTCTTTTGCACTCCT
ACGTCACATCCTTCGTCCAGTGCCTGCAGACTGCTTCTTTTTTCAAAGAA
AGAGCAGCAACCAGGACATAGACACTACCCCCAGCCCCACCAACATGCCC
GAAGTCACCATCAATCCCGCGTCTTTTCACAGTATGTACGAAATCGGCCC
CCCAATCGGCACCGGGGCTTTCGCCCTCGTCTATAAATGTACACAAAAAA
ATGACTCCGGGAGACCGGCAGCCGTCAAGGTGTTTGATTTGAGCAAGGTG
CCGAAGGGGAAGCAGGCGACGGCAAGGGAGCGTATCTATAATGAGGTCGC
CATCCTTCAATCCCTAAAGCATGACCGGATAGTCAAAGCCTATGATTTTT
TCGAATCTTCCACAGATTCGTGCTCATACTTAGTCATGGAGTTTTGTCAG
GGCGGGGAACTGTTTGAGCGGATAGTGGCCAAGACAACGTATAACGAGAA
GGAGGCGCGGGATGTGATTAGGATGCTGTTGAGTGCCTTGGCCTTCTGCC
ACGACGAGGCTAAGGTGGTGCATCGCGATTTGAAGCCCGAAAACCTCCTT
CTTGAAAGCACGACATGCGACCTTCAGATCAAGCTGGCTGATTTTGGAAC
GGCCTCCCGCATCCAAACTCCTGACTCTCTCACGCGCTACTGCGGTACTC
CTTCTTATACCGCTCCAGAAATCCTCTCCCGGAAGAAGTACGGCTGTAAG
GTTGACATGTGGAGCGCGGGGATCATCGCTTACATTCTTCTGGGGGGCTA
CCCGCCTTTTGCGGACAACCAGGATCAGATTAAGAAGAAACACACTGTCC
TCTTCCACTCCCCCGAATGGGACAAGGTCTCCCCCGAGGCCAAGAGCCTC
ATCTCCCACCTTCTCCTTGTCGACCCGCGCCGCCGGCTCTCAGCGACGGA
AGCTCTCTCCCATAAATGGTTCTCGAAAGAGGAGGAGGAGCTGGAGGAGA
GAGAGCTGAAGGAAGCAAGGGATGGGATCCGAAAGTTTAATGCGTTGAGA
AAAATGCGAGTGGCCGTCCGGGCCGTCATGGCAACCAATAAGATTAGAAG
CCTCGTGACACCGCCTATGGGGAAGGAGAATTAA
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protein sequence of NO10G00610.1

>NO10G00610.1-protein ID=NO10G00610.1-protein|Name=NO10G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MAASSTSLATSRHGITTASVAPIGIAYGALLASYLFLHTDDANEDGTDQH
SAFQQQQTQQQHSFALLRHILRPVPADCFFFQRKSSNQDIDTTPSPTNMP
EVTINPASFHSMYEIGPPIGTGAFALVYKCTQKNDSGRPAAVKVFDLSKV
PKGKQATARERIYNEVAILQSLKHDRIVKAYDFFESSTDSCSYLVMEFCQ
GGELFERIVAKTTYNEKEARDVIRMLLSALAFCHDEAKVVHRDLKPENLL
LESTTCDLQIKLADFGTASRIQTPDSLTRYCGTPSYTAPEILSRKKYGCK
VDMWSAGIIAYILLGGYPPFADNQDQIKKKHTVLFHSPEWDKVSPEAKSL
ISHLLLVDPRRRLSATEALSHKWFSKEEEELEERELKEARDGIRKFNALR
KMRVAVRAVMATNKIRSLVTPPMGKEN*
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mRNA from alignment at chr10:204659..207419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00610.1 ID=NO10G00610.1|Name=NO10G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2761bp|location=Sequence derived from alignment at chr10:204659..207419+ (Nannochloropsis oceanica)
ATGGCTGCCTCGTCTACTTCCCTCGCCACGTCTCGGCATGGCATAACCAC
GGCGAGCGTAGCTCCGATTGGGATTGCATATGGCGCTCTTCTCGCTTCGT
ATTTGTTCCTCCACACGGATGACGCTAACGAGGATGGCACGGACCAGCAC
TCTGCCTTTCAACAGCAGCAAACCCAGCAGCAGCATTCTTTTGCACTCCT
ACGTCACATCCTTCGTCCAGTGCCTGCAGACTGCTTCTTTTTTCAAAGAA
AGAGCAGCAACCAGGACATAGACACTACCCCCAGCCCCACCAACATGCCC
GAAGTCACCATCAATCCCGCGTCTTTTCACAGTATGTACGAAATCGGCCC
CCCAATCGGCACCGGGGCTTTCGCCCTCGTCTATAAATGTACACAAAAAA
ATGACTCCGGGAGACCGGCAGCCGTCAAGGTGTTTGATTTGAGCAAGGTG
CCGAAGGGGAAGCAGGCGACGGCAAGGGAGCGTATCTATAATGTAAGGCG
AAGACAGTGAAAGTAGGAAATAAAGACGACTGGCGGGCGGAAAGCGGGAG
GACATTATGTAGAATGAAGGGGTGGGGAAAAGGTAGCATGCTCGTTCTGG
TTGATGTAATATTCTATTGTTTCATGTATTTGACAACCACAGGAGGTCGC
CATCCTTCAATCCCTAAAGCATGACCGGATAGTCAAAGCCTATGATTTTT
TCGAATCTTCCACAGATTCGTGCTCATACTTAGTCATGGAGTTTTGTCAG
GGCGGGGAACTGTTTGAGCGGATAGTGGCCAAGACAACGTATAACGAGAA
GGAGGCGCGGGATGTGATTAGGATGCTGTTGAGTGCCTTGGCCTTCTGCC
ACGACGAGGCTAAGGTGGTGCATCGCGATTTGAAGGTAGGCAGGCCCTTC
CTCCCCTATCCTTCCTCCCTCGCTCCCTCTCTCCCTCCCTTCCTCAACTC
TCTGATTACAATGAAACTTGGTCAACGCCTGGTGTCGTGCATTGGGATTT
GGAAAAGAGGGAGGTAGGAAATGAGGGAGGGAAGGAGGTAAGGGAGAGAG
CAGCCACGATGTTTCTAATTGTCTGATCTCCGACAATGATGGATATTCTC
CCGCGGGTGAAAGAAGAGGCTGAACGCCATACTGAACCCCTCCCCCCCCC
CCTCTCCCTCCCTTCCTCTCTTTCGCTTTCTGCCCTCGTAGCCCGAAAAC
CTCCTTCTTGAAAGCACGACATGCGACCTTCAGATCAAGCTGGCTGATTT
TGGAACGGCCTCCCGCATCCAAACTCCTGACTCTCTCACGCGCTACTGCG
GTACTCCTTCTTATACCGCTCCAGGTATCCCTTCCCTCTCTCTCTCTCTC
CCACCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTCATAAT
ATCGTTGGTTGTCTTAACCCACACTTCCCCTCCCTCCCTCCTTCCCCTCC
TCCCTCTCCCAAGAAATCCTCTCCCGGAAGAAGTACGGCTGTAAGGTTGA
CATGTGGAGCGCGGGGATCATCGCTTACATTCTTCTGGGGGGCTACCCGC
CTTTTGCGGACAACCAGGATCAGATTAAGAAGGTACTATGTAATGTAATG
GTGGGGATCTTTTACTGGTGACATTGATTAGGAAGGCATTGTGTAGTGGT
GGGGATGCATTACTGATAAGAATGACTTAGAATATAGGTAGTGGTGGGGA
TGCATTGCTGATAAATATGACTTAGAATATATAGGTAGTGGTGGGGATGC
ATTACTGATAAATATGACTTAGAATATAGGTAGTGGTGGGGATGCATTAC
TGATAAGAATGACTTAGAATATAGGTAGTGGTGGGGATGCATTACTGATA
AATATGACTTAGAATATAGGTAGTGGTGGGGATGCATTACTGATAAGAAT
GACTTAGAATATAGGTAGTGGTGGGGATGCATTACTGATAAATATGACTT
AGAATATATAGGTAAGCAGGAAGGAGTGCAGCAGTCGGACATGGGGACTG
CCCTTTTCCCTTTATTTATTTTTCCTACAGCGGGGGGAAAGGGGGGTTGA
ATACCTCCACGTCTTCTTCTGGTCTCTAACGCGATTTTTAGTTTTTGATG
CGCATGCTGTCCGCTCATTCCCTCTCTACTGCCCTTCCCTCGGTCACTTC
CTCCTCCAGAAACACACTGTCCTCTTCCACTCCCCCGAATGGGACAAGGT
CTCCCCCGAGGCCAAGAGCCTCATCTCCCACCTTCTCCTTGTCGACCCGC
GCCGCCGGCTCTCAGCGACGGAAGCTCTCTCCCATAAATGGTTCTCGAAA
GAGGAGGAGGAGCTGGAGGAGAGAGAGCTGAAGGAAGCAAGGGATGGGAT
CCGAAAGTTTAATGCGTTGAGGTAGGGAGGGAGGGAGGTAGGGAGGTAGG
GAGGTAGGGAGGGAGGGAGGGGTGGCCGGCTTTCGCATGAGTGGTTTATT
AGCAGAGGAGGTGTAGGTGCTGGATCGGAGAAATCTTTGCGGGGGACTTG
GAGACAGTTGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAC
GAGGGTTCTCGGCGCCCACGTTGTGTTACTTTTCTCTCCGAATCATTATG
AAATGAGACCTTTCTCCTCTTAGCCTTCCCCCTTCTTCCTTTACTTTCCT
TTCATCTTCTCCTCCTTCCCCATCAGAAAAATGCGAGTGGCCGTCCGGGC
CGTCATGGCAACCAATAAGATTAGAAGCCTCGTGACACCGCCTATGGGGA
AGGAGAATTAA
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Coding sequence (CDS) from alignment at chr10:204659..207419+

>NO10G00610.1 ID=NO10G00610.1|Name=NO10G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr10:204659..207419+ (Nannochloropsis oceanica)
ATGGCTGCCTCGTCTACTTCCCTCGCCACGTCTCGGCATGGCATAACCAC
GGCGAGCGTAGCTCCGATTGGGATTGCATATGGCGCTCTTCTCGCTTCGT
ATTTGTTCCTCCACACGGATGACGCTAACGAGGATGGCACGGACCAGCAC
TCTGCCTTTCAACAGCAGCAAACCCAGCAGCAGCATTCTTTTGCACTCCT
ACGTCACATCCTTCGTCCAGTGCCTGCAGACTGCTTCTTTTTTCAAAGAA
AGAGCAGCAACCAGGACATAGACACTACCCCCAGCCCCACCAACATGCCC
GAAGTCACCATCAATCCCGCGTCTTTTCACAGTATGTACGAAATCGGCCC
CCCAATCGGCACCGGGGCTTTCGCCCTCGTCTATAAATGTACACAAAAAA
ATGACTCCGGGAGACCGGCAGCCGTCAAGGTGTTTGATTTGAGCAAGGTG
CCGAAGGGGAAGCAGGCGACGGCAAGGGAGCGTATCTATAATGAGGTCGC
CATCCTTCAATCCCTAAAGCATGACCGGATAGTCAAAGCCTATGATTTTT
TCGAATCTTCCACAGATTCGTGCTCATACTTAGTCATGGAGTTTTGTCAG
GGCGGGGAACTGTTTGAGCGGATAGTGGCCAAGACAACGTATAACGAGAA
GGAGGCGCGGGATGTGATTAGGATGCTGTTGAGTGCCTTGGCCTTCTGCC
ACGACGAGGCTAAGGTGGTGCATCGCGATTTGAAGCCCGAAAACCTCCTT
CTTGAAAGCACGACATGCGACCTTCAGATCAAGCTGGCTGATTTTGGAAC
GGCCTCCCGCATCCAAACTCCTGACTCTCTCACGCGCTACTGCGGTACTC
CTTCTTATACCGCTCCAGAAATCCTCTCCCGGAAGAAGTACGGCTGTAAG
GTTGACATGTGGAGCGCGGGGATCATCGCTTACATTCTTCTGGGGGGCTA
CCCGCCTTTTGCGGACAACCAGGATCAGATTAAGAAGAAACACACTGTCC
TCTTCCACTCCCCCGAATGGGACAAGGTCTCCCCCGAGGCCAAGAGCCTC
ATCTCCCACCTTCTCCTTGTCGACCCGCGCCGCCGGCTCTCAGCGACGGA
AGCTCTCTCCCATAAATGGTTCTCGAAAGAGGAGGAGGAGCTGGAGGAGA
GAGAGCTGAAGGAAGCAAGGGATGGGATCCGAAAGTTTAATGCGTTGAGA
AAAATGCGAGTGGCCGTCCGGGCCGTCATGGCAACCAATAAGATTAGAAG
CCTCGTGACACCGCCTATGGGGAAGGAGAATTAA
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Synonyms
Publications