rna9989, rna9989 (mRNA) Nannochloropsis gaditana

Overview
Namerna9989
Unique Namerna9989
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length228
Alignment locationKK037259.1:65088..66202 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100385g5.2319.mrna
Orig protein idgnl|cribi|Naga_100385g5.2319
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:65088..66202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100385g5gene9690Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9989rna9989-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20717.1cds9958Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9989 ID=rna9989|Name=rna9989|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGAGAAGTATCCTCTCTAGACTATGCCAAGTCGTTGACGCGAAGGAATC
TTGGATTTATCGGGAATTTGCAAGGCCCTGTAAAATTTGCCCTGAGGGTT
TTTTATTAAAACATCCTTGGCTCCAGAACCGCAGCATGACTAGAAGGTCG
CGACAAAAACTAACATTAATTTTGTGGCAAAATCTTTTGTCTTGTAATCT
ACTGATGCTTTATGTCATATCGCTGTAG
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protein sequence of rna9989

>rna9989-protein ID=rna9989-protein|Name=rna9989|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MNGCRRGRDLSRLLLLMTLTTLILITGMPRPPVPKPREGAEQRNGTKNGS
SAGHNKNHHEAQEQKLQHQTLPPILPPPVVMKSGMGVVGGNKSQKEEDMV
AEREALHKLHYGTLVSLLQDDALEVRIGLNSAGMSESSLPSLASGGMEGG
RKGGQEGGREVARLHAIG
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mRNA from alignment at KK037259.1:65088..66202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9989 ID=rna9989|Name=rna9989|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp|location=Sequence derived from alignment at KK037259.1:65088..66202+ (Nannochloropsis gaditana)
GGGACCTGTtcgaggggaagagaggatcTTTTGCCGCTCTTTCTTTACCC
CTTCGTCTCCCGAACACTTCATTTCCCGTGTTCCCTTTTCCTACGCCCTT
TTCACTTAGGTTTCGGCGCACAAGGACCATTAGCTCAAAGCGGACCATCT
GAAGTTTGGAATGCATGAATGGTTGTCGACGTGGTCGCGATTTATCCCGT
CTCTTACTTCTCATGACCTTAACCACTTTAATCCTTATCACAGGCatgcc
acgtcctccggTCCCTAAACCCCGCGAGGGAGCCGAGCAGAGGAATGGCA
CTAAAAATGGATCGTCTGCTGGCCACAATAAAAATCACCACGAAGCACAA
GAACAAAAACTGCAGCaccagaccctccctcccatcctccccccgccggt
AGTGATGAAGAGTGGAATGGGTGTTGTGGGAGGAAACAAGAgccaaaaag
aagaggacatgGTGGCTGAGAGAGAAGCCTTGCACAAATTGCATTACGGT
ACGCTGGTATCTTTGCTACAGGTAAGGGCGTTTGAAGCGGGTGGCGCAGT
aagcggcgggggggaggggaaaggagttgacgggagagggaggaggggga
ccCAGGATGCTTACATTGGAGACAGTACGTGTCGGCACAGAGAGGCTTTT
CCCACACTCACCCGCGAATTCATTCACGCACTTAGGACGATGCGCTTGAA
GTAAGAATTGGCCTTAACTCGGCGGGAATGAGTGAGAGCAGTCTCCCATC
GCTTGCTAGTGGaggtatggagggagggcggaagggagggcaggagggag
ggcgggaggttgcaAGGCTGCACGCGATAGGTTGACGCGTgttcctcccc
gcttccaccCCTACCCACAAACATGGACCGGGCGggtagaaaaggaggcc
gTTGGCGTGGATGGGCGCGCCCCCCTGTATGGCACGCCCTCCGTCGGTGC
TGCACCCGATGTCAGGGGGCAGACACACAGACAAGGACAACAGCTGGAGC
AGCTACCCTTGCTGCAGCGGCagccgaggaagaagaagaagtggATCGCG
TCCTGGTTCACGCCCTCTTTCGTGATTGTGGCCCTGGTGGTGTTGAACGG
CGACAGCGCGCGAGG
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Coding sequence (CDS) from alignment at KK037259.1:65088..66202+

>rna9989 ID=rna9989|Name=rna9989|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at KK037259.1:65088..66202+ (Nannochloropsis gaditana)
ATGAATGGTTGTCGACGTGGTCGCGATTTATCCCGTCTCTTACTTCTCAT
GACCTTAACCACTTTAATCCTTATCACAGGCatgccacgtcctccggTCC
CTAAACCCCGCGAGGGAGCCGAGCAGAGGAATGGCACTAAAAATGGATCG
TCTGCTGGCCACAATAAAAATCACCACGAAGCACAAGAACAAAAACTGCA
GCaccagaccctccctcccatcctccccccgccggtAGTGATGAAGAGTG
GAATGGGTGTTGTGGGAGGAAACAAGAgccaaaaagaagaggacatgGTG
GCTGAGAGAGAAGCCTTGCACAAATTGCATTACGGTACGCTGGTATCTTT
GCTACAGGACGATGCGCTTGAAGTAAGAATTGGCCTTAACTCGGCGGGAA
TGAGTGAGAGCAGTCTCCCATCGCTTGCTAGTGGaggtatggagggaggg
cggaagggagggcaggagggagggcgggaggttgcaAGGCTGCACGCGAT
AGGTTGAATGAATGGTTGTCGACGTGGTCGCGATTTATCCCGTCTCTTAC
TTCTCATGACCTTAACCACTTTAATCCTTATCACAGGCatgccacgtcct
ccggTCCCTAAACCCCGCGAGGGAGCCGAGCAGAGGAATGGCACTAAAAA
TGGATCGTCTGCTGGCCACAATAAAAATCACCACGAAGCACAAGAACAAA
AACTGCAGCaccagaccctccctcccatcctccccccgccggtAGTGATG
AAGAGTGGAATGGGTGTTGTGGGAGGAAACAAGAgccaaaaagaagagga
catgGTGGCTGAGAGAGAAGCCTTGCACAAATTGCATTACGGTACGCTGG
TATCTTTGCTACAGGACGATGCGCTTGAAGTAAGAATTGGCCTTAACTCG
GCGGGAATGAGTGAGAGCAGTCTCCCATCGCTTGCTAGTGGaggtatgga
gggagggcggaagggagggcaggagggagggcgggaggttgcaAGGCTGC
ACGCGATAGGTTGA
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Synonyms
Publications