rna9969, rna9969 (mRNA) Nannochloropsis gaditana

Overview
Namerna9969
Unique Namerna9969
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length774
Alignment locationKK037259.1:5927..6903 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100261g3.1650.mrna
Orig protein idgnl|cribi|Naga_100261g3.1650
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:5927..6903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100261g3gene9671Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9969rna9969-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20733.1cds9938Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9969 ID=rna9969|Name=rna9969|organism=Nannochloropsis gaditana|type=mRNA|length=774bp
ATGTCCTGTTTGTGGGGAATCGTGATCGCCATTTTGAGCTGCGGAATACA
TACATCAGCGTTTCCGCGCGGCGATGATGTAGCTTCCCAATGGATGGACA
AGTGTGAAGCGGCTTTAGCGCGTCGCTACCAGGACTCTCAGGCTGCACCT
TTCTGCAATGATTTGCTTCGACACATCTTTATCATTGTGTCGCCAAAAAT
CGGTGATAGAAGTGGAAACTACGATCTCGAAGCTGTGGACACGTTGGGCA
TAGTCATGACAAGCCACAGCTGGACTGAGGAGGGAGCGGCGGGGACGAGG
AAGCCAAAACGTCCAGAGCGGCCTGACATGCGGGAGGAACCGCAGACGCT
GGCATTACCGACGGGACGAAATAATGAAGCCAAGGTCGATGAGAAAGAGG
AAGAAAAACCGTTACCTGGCCGGCGGTCTTTGAGGGTGAAGCATTCGAGC
AGCATGGGGGGGCCCCTGGACACGGATAGCAGGGGGTTCTCCGAGTTCAA
AGAAGTTAAAGACTTCGTCAACCTGGGCCTCGCCTTGATCTGCGTCCTGT
TCGCTGCCTTAGCCTCGGGGTTGACAATCGGGCTCCTTTCCATCGACACG
CTGGACTTGGAGATCAAGCAGCGCGCCGGCACCCCCACGGACAAGCACCA
CGCCGCCGCCATCCTCCCCCTCCTCGCCCACCGGCACCTGCTCCTGGTCA
CGCTCCTTCTGTTCAACTCCATGGCTGCCGAGGCCCTACCCCTAGCTTTA
GGCGAGCTGGTGCCAGCTTCGTAG
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protein sequence of rna9969

>rna9969-protein ID=rna9969-protein|Name=rna9969|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MAQLLQEEVIEEDRLEGLLEEDEGEQEEEGEQEEEEEERQGPIPAPSGRN
EEDAEGKSLGLGREKHHKGVPEGGKADARGRRQEEDGEMQVVGFTRHGSS
IALLNTSQTMVSSSSSTWEPRQLATARSLFNVSASPEPMIASMSSFRPSK
EKSTGRKDIDVASHSEKNQVTGDKSLQQTSKWWIPFWGNRMDSRGAVARK
IEAEKGGAREKKAQGHDQGKGGRRGGRGDQSLTMELSSL
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mRNA from alignment at KK037259.1:5927..6903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9969 ID=rna9969|Name=rna9969|organism=Nannochloropsis gaditana|type=mRNA|length=977bp|location=Sequence derived from alignment at KK037259.1:5927..6903+ (Nannochloropsis gaditana)
GTGCGGCCTGCCCCTTGCCTCGGAGCCCTTGGGCCTCATCACCCTCCAAG
ACGTGATGGCAcagctcctccaagaagAAGTGATAGAGGAGGACCGGTTG
GAGGggctgttggaggaggacgagggggagcaagaggaggagggggagca
agaggaggaggaggaggagcgccaAGGACCAATACCCGCGCCGTCTGGGC
GGAatgaggaagacgcggaAGGAAAATCGCTGGGCCTGGGCAGGGAAAAG
CATCATAAGGGGGTGCCCGAGGGGGGCAAAGCGGATgcgcgggggagaag
gcaggaggaagacggggagatgCAAGTGGTCGGCTTCACCCGGCATGGGT
CCTCAATCGCCCTGCTGAATACATCGCAGACGATGgtttcgtcttcttcc
tccacctgggAGCCACGTCAACTTGCCACAGCACGTAGCCTATTCAACGT
GTCGGCTTCTCCTGAACCGATGATCGCCTCTATGAGCTCTTTTCGGCctt
caaaagaaaaaagcacaggaaggaaggatatCGATGTTGCGAGCCACAGC
GAGAAGAATCAAGTGACTGGGGATAAGAGCCTCCAGCAGACCTCGAAATG
GTGGATACCGTTCTGGGGGAATCGCATGGACAGCAGGGGTGCGGTTGCGA
GAAAGATAGAGGCTGAGAAGGGtggagcgagagagaagaaggcccAGGGC
CACGatcaaggaaaaggaggacgcagggggGGTCGGGGAGACCAGTCACT
CACTATGGAACTTTCATCATTGTGAGGATCGATTGTAAAGACATGTTTCA
TGAGCAAACGTCATATGTTCTCTTTCTATCAGCCTTTGTCGAAGGGAAAG
CAAtaagaggggagaaaagggttATTATGGAGGCTGGGGGCATCGCAAGG
TAGGGTAAAACGTAATCGAAAAGCATGCACATAGACTGCCTGCTTCCTGT
CAATAAAGAAAGCTCGAGTGCATACAT
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Coding sequence (CDS) from alignment at KK037259.1:5927..6903+

>rna9969 ID=rna9969|Name=rna9969|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at KK037259.1:5927..6903+ (Nannochloropsis gaditana)
ATGGCAcagctcctccaagaagAAGTGATAGAGGAGGACCGGTTGGAGGg
gctgttggaggaggacgagggggagcaagaggaggagggggagcaagagg
aggaggaggaggagcgccaAGGACCAATACCCGCGCCGTCTGGGCGGAat
gaggaagacgcggaAGGAAAATCGCTGGGCCTGGGCAGGGAAAAGCATCA
TAAGGGGGTGCCCGAGGGGGGCAAAGCGGATgcgcgggggagaaggcagg
aggaagacggggagatgCAAGTGGTCGGCTTCACCCGGCATGGGTCCTCA
ATCGCCCTGCTGAATACATCGCAGACGATGgtttcgtcttcttcctccac
ctgggAGCCACGTCAACTTGCCACAGCACGTAGCCTATTCAACGTGTCGG
CTTCTCCTGAACCGATGATCGCCTCTATGAGCTCTTTTCGGCcttcaaaa
gaaaaaagcacaggaaggaaggatatCGATGTTGCGAGCCACAGCGAGAA
GAATCAAGTGACTGGGGATAAGAGCCTCCAGCAGACCTCGAAATGGTGGA
TACCGTTCTGGGGGAATCGCATGGACAGCAGGGGTGCGGTTGCGAGAAAG
ATAGAGGCTGAGAAGGGtggagcgagagagaagaaggcccAGGGCCACGa
tcaaggaaaaggaggacgcagggggGGTCGGGGAGACCAGTCACTCACTA
TGGAACTTTCATCATTGTGA
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Synonyms
Publications