rna9962, rna9962 (mRNA) Nannochloropsis gaditana

Overview
Namerna9962
Unique Namerna9962
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1701
Alignment locationKK037258.1:114553..115017 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100249g6.5589.mrna
Orig protein idgnl|cribi|Naga_100249g6.5589
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:114553..115017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100249g6gene9664Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9962rna9962-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20743.1cds9931Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9962 ID=rna9962|Name=rna9962|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp
ATGGACAGTTCAGGCATAGACCTGGAGGAAGGAGCAACGTTAATAGAAGA
ACTGAGTGACTGGCCTGCCCTCGACGATATATTCTGTGACGATGCCACAA
AATTTGAGGGAGGTCAAGGCGAGCAAACTGACATTGATACCGTAATTGCC
GCCACCTCACCGTTTGGTTTGGACTTCAACGCGTCCGCAGTGAGGCCGTC
ACCTTTCTCCTTGGAGGCTTCCTTGGCCCCAGGCGCTCATCACGGCCAAG
ACCTGGGAAAACACGAAGTTGCACCGGGACAAAAAGAAGGGACGGTGGAT
GTCACGCACAAAAAGAGACGGGCGTCGCGGATAAGATCACGGGAGAGGTC
CTGTCGGGTCTGCTATTTGGAAAAAGCGTCATGCGACAGGAATTTTCCTT
GTGGGCGATGCTTTCGGTACAACAAGCCCTGTAGACCCGCCACGGTCACT
CAGGGTTCCCGCAGGCCCGTGAGAGGCACTTCTTCTTCCTCCCTCCTTTT
CCAGTCTTCCCCCTACCTAGACTTGGTCATAGAACGCAGCGACCTCCCAG
CCATGGTTCCTCTGTACCTGCAGGCCTTCCAGGATCTTTTTCAGGAGGGA
GTGCTGAACCGAAAGAGGGCGATCGGCCTTTTGAAGAGTTGGGTAGATCT
GGGAGTGATGATGGATGGAGATTGTGACCCTACATTCGGGGCCTTTGCGG
AGGTCAAAGCTGCCTTTCAAATTAATGACCTTGAATTGGAGGACCCAGAA
TGCCTTGCCTATGAACCGCCCTTGCACGCAGAGAAAGGACGGTTGTGGGC
CGCGCGGGCAGACCGGGTGCTGGGAGAAGGCGCCAAGCACCTGGAAGAAA
ATTTGGTGTGCCGACAAGCGAACAACTCGAGCCGGGCAGTCTACATGGCT
AGAATGGATTGCAAGGACCAATGGGTGATCAGCAACAAGGCCCACAACAC
TTATTTTCGAAGCCCGGCCGAGTTTATGCAAGATATGTGGAAGCGGCGCT
GTTTGCTAGCCTTCCTCTTCGCCGCAGGCGTCGCTCCCGAAGATCGCCTC
GCCTACTTTAAGCTTCTCCATTTTGCGACGCTGTCGACAAGTCTTATGAA
ACGAACGGCTTTCCTGAAGATATTCGATCGCCAAGGCCGCATGACCCTCT
ATCTCTCAGACCACCAAGTTGTAAAAATGGGCCCAAACGAGTACGCTTCG
CTCTGTGTCACTGAACCCGCGCCTCCCTCCCGGCACGTTACCACCCGTCC
TGACGTAACTCGTTTGAGGTCGACGCATCATCCCTGCAACAGTTCGAGTG
CTTCCATGTTCCGGGTCGCTTCGGGGGACATGCGACGGAGGCAAGCTTGC
GATGTAAGCAAACAATGGTCTCGAGCAGGCGAAATCAGGTGGCCTGATGA
TACCACGGGCCGGGGGGCGGACATGCGCGAAGAAAAGGCATTTAATGTCC
TCAGAGTATCGGAAGAATCCCCTGCCTCGCCCACTTCTACTTTTTCCACC
ATGCCACGCGCTGACCCGGAAATGCTTGTACCCTGCATTGCCAGCATTCC
TGTAGTGTCCCCTGATTTGGATACGGGCAGCAGTCAACAGAAGATCAAAG
GAAGGGCATGGTGTAGAATGAATGAAGTCGGACGAACGGAAATATGTATC
GATGGCTCAACAGAAAATGAGTTTCACAATGAAAGTTGTATTGGGAAATG
A
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protein sequence of rna9962

>rna9962-protein ID=rna9962-protein|Name=rna9962|organism=Nannochloropsis gaditana|type=polypeptide|length=97bp
MGVCLYFISFSHEMYDDWHECCQIDGFEGKDLPPLSVLLTEEEMSLTPGL
KGAKSTPIMIRDQRTTIEFSSLTKSCFMPPRNCKNIAATGCCACYPM
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mRNA from alignment at KK037258.1:114553..115017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9962 ID=rna9962|Name=rna9962|organism=Nannochloropsis gaditana|type=mRNA|length=465bp|location=Sequence derived from alignment at KK037258.1:114553..115017+ (Nannochloropsis gaditana)
ATGGGCGTATGCCTCTAttttatttctttttcccaCGAAATGTACGATGA
TTGGCACGAGTGTTGTCAGATAGATGGTttcgaggggaaggagtccATTT
GGACCACACGTTAATGTGTTTCTTCCTGATAGTGGAAGTACTTGACACCC
ACCCAAACTCGGCGTaagcctccccccgctctcgGTTCTACTTactgaag
aagaaatgagcCTCACTCCAGGTACATTTTTCTATCGCCCATGAAATGAA
ATAAACGCACCTGTTTCAAAAAGTGAGCATAGCTCTATTGCAAATGTAAA
TGTAATGGTCGAGTAGGACTTAAGGGTGCGAAAAGCACTCCGATTATGAT
CAGAGATCAGAGAACTACCATTGAGTTCAGCTCCTTGACCAAGTCTTGTT
TTATGCCACCGAGAAATTGTAAAAATATCGCAGCAACAGGCTGCTGTGCG
TGCTATCCGATGTGA
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Coding sequence (CDS) from alignment at KK037258.1:114553..115017+

>rna9962 ID=rna9962|Name=rna9962|organism=Nannochloropsis gaditana|type=CDS|length=882bp|location=Sequence derived from alignment at KK037258.1:114553..115017+ (Nannochloropsis gaditana)
ATGGGCGTATGCCTCTAttttatttctttttcccaCGAAATGTACGATGA
TTGGCACGAGTGTTGTCAGATAGATGGTttcgaggggaaggacctccccc
cgctctcgGTTCTACTTactgaagaagaaatgagcCTCACTCCAGGACTT
AAGGGTGCGAAAAGCACTCCGATTATGATCAGAGATCAGAGAACTACCAT
TGAGTTCAGCTCCTTGACCAAGTCTTGTTTTATGCCACCGAGAAATTGTA
AAAATATCGCAGCAACAGGCTGCTGTGCGTGCTATCCGATGTGAATGGGC
GTATGCCTCTAttttatttctttttcccaCGAAATGTACGATGATTGGCA
CGAGTGTTGTCAGATAGATGGTttcgaggggaaggacctccccccgctct
cgGTTCTACTTactgaagaagaaatgagcCTCACTCCAGGACTTAAGGGT
GCGAAAAGCACTCCGATTATGATCAGAGATCAGAGAACTACCATTGAGTT
CAGCTCCTTGACCAAGTCTTGTTTTATGCCACCGAGAAATTGTAAAAATA
TCGCAGCAACAGGCTGCTGTGCGTGCTATCCGATGTGAATGGGCGTATGC
CTCTAttttatttctttttcccaCGAAATGTACGATGATTGGCACGAGTG
TTGTCAGATAGATGGTttcgaggggaaggacctccccccgctctcgGTTC
TACTTactgaagaagaaatgagcCTCACTCCAGGACTTAAGGGTGCGAAA
AGCACTCCGATTATGATCAGAGATCAGAGAACTACCATTGAGTTCAGCTC
CTTGACCAAGTCTTGTTTTATGCCACCGAGAAATTGTAAAAATATCGCAG
CAACAGGCTGCTGTGCGTGCTATCCGATGTGA
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Synonyms
Publications