rna9952, rna9952 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9952
Unique Name	rna9952
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1076
Alignment location	KK037258.1:85629..87953 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100816g1.5803.mrna
Orig protein id	gnl\|cribi\|Naga_100816g1.5803
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037258.1	supercontig	KK037258.1:85629..87953 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100816g1	gene9654	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9952	rna9952-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20752.1	cds9921	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037258.1:85629..87953+
coding sequence from alignment at KK037258.1:85629..87953+

mRNA sequence

>rna9952 ID=rna9952|Name=rna9952|organism=Nannochloropsis gaditana|type=mRNA|length=1076bp
TCCCTCCTGTGCCCCTCAGCATGATGAGTGACTTCCACGTCCACATCCCA
GACGACAGCCGCCTGCACGAGTTCTGCGTCGTCTTTCATGGACCGCCCGA
AAGTACGTCTCCTTTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTAATTCCTCCCTTTCTCCTCCTCTTTCCTAGATCCTC
GTCTTTTTGACTTAACGACACCATCCATTGTATCGTCATTCCCTCATAAA
GTCCACCCCTGCCTCTGCCTTTGTCTGTCTCCCTTCGTCCCTCTCTCCCT
CCCTCCCTCCTTCCTTCCCTCAGCGCCCTACCATGGTGGCCAGTGGAAGG
TCCATGTCACCCTTCCACTCGATTATCCTTTCAAATCTCCGTCCATTGGG
TTCAGCAACCGCCTTTTCCATCCCAATGTGGACGAGATGTCCGGTTCTGT
CTGCTTGGATGTCATAAATCAAGCCTGGACCCCGATGTACGACCTGGTCA
ACGTGTTCGAGACCTTCCTGCCTCAGCTCCTGCGCTATCCCAACCCCAGT
GATCCACTCAACGCGGACGCGGCCAACCTTCTGCTGCGTGATCCAGAGGG
ATACCATGCCCGGGTTCACGGTAAGGTGACGAGAGGGGGAGGGAGCGGAG
GGACAAAGGACTGAAGGAAGAATAATTTTTTCGGTGGGAGAGGAGAAAGA
GGGCAAGAAGGACGAACGAAAAGGATGGAATGTTGGAGGAATGCTCCGGA
GGAATCCTTCTCACAGAGTCTCGGCGCGCTTGTGAGCATGGAATGCGCTT
TCTTCCCCTTTCCCTTCCATCTTGCCTCTTGTCATCCTTCCCTGCTTTGA
TTACATTTTATCGCCCGTCCTCGCTTCCTTTCCTTGTGCCCCCCTTTATC
AGATTACGTGCGGCGGTACGCGTCGGTCGCGCTCTTTCTCGACGAGGAAG
ACAAGGCGGGAAGGAGCGAGCGAGAGCGGGAAGCAGGGAGGCCCACACAG
AGCTCGCCAGCGCCTTCTGCAGGAGTGCCACGACAGCATCCGCACCGAGG
CAGACAACCCTCATTGTCCTCGTCAG

protein sequence of rna9952

>rna9952-protein ID=rna9952-protein|Name=rna9952|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MCMPELSTEALRLRKLWSTPVKAKCPFISLQRIMHGNEINTDYACPRSAK
RFKAGEELPSTLASLHSTKYTHIRFIGYVIPTTPANIVAVGDPNGQGAVA
GTYLGHENVQKDIQGRLSVLQVAVKTAKAQLPSNDVNGTVLTVFCAPEFF
WHGHEGPYLHTSKAEDPADVILQALADAFPANEYPHWLFICGTAITARVE
NKEKLYNLNSTITRNAVVESLCRQLRHCYGPLSEVIMDMLIGFIKHCHAY
PLLSVRNRALILGSNLHDVPNQELATKTMTTEKYFCSNEDFLLYEVNKQP
VVTEQMVTYQSIDLTAGDVKRHTRDKYAIFQVSPSPLGSAPDSFIQSKDK
SKQPPPVESGIPMTVSWREGPSVGAERVLDVAVEICLDHRDVRLRRNIGN
HPFHVQLIPSCGMQIKENGAAVEEGGLIFNVDGQYAIGGTSTSASGLPQR
GKVNEVPCLFTNYVDETNEGYAGHTQLARVQRRAVGAHVSAKGSRNASFY
EDLGTDDVRVFPVKAVHNLASFFAGGPGALHIYGFHKPLPLYMD

mRNA from alignment at KK037258.1:85629..87953+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9952 ID=rna9952|Name=rna9952|organism=Nannochloropsis gaditana|type=mRNA|length=2325bp|location=Sequence derived from alignment at KK037258.1:85629..87953+ (Nannochloropsis gaditana)
CGGGAGCGACAGACTACTTTCACATGTGACCGAGCAAGTGGGTCTTCGAA
TCGATGTCAAAGAAAAACAATGTGATTTTGGATATGAGGCTTCTCTTACA
GGAATAAGGACTCTGAAATTTGTGGGAGGTGTCCCTGTTGTTTGTTCGTT
TGCGTGGCATGTGCATGCCAGAATTATCGACGGAGGCTCTTAGGCTCAGG
AAGCTCTGGTCGACCCCCGTGAAGGCTAAATGTCCCTTTATATCTCTCCA
AAGGATCATGCATGGGAACGAAATAAATACAGACTATGCATGTCCAAGGA
GTGCTAAAAGATTTAAAGCAGGCGAGGAGCTTCCCTCCACACTCGCGAGC
CTCCACTCTACCAAGTACACTCATATCCGCTTCATTGGATATGTCATTCC
GACTACGCCCGCTAACATCGTCGCCGTGGGTGATCCTAATGGTCAAGGTG
CCGTTGCAGGTACTTATCTCGGTCATGAAAATGTACAAAAGGACATTCAA
GGGCGTTTGTCTGTCCTTCAAGTCGCCGTCAAGACTGCGAAAGCCCAGCT
TCCTTCCAACGACGTGAATGGGACAGTGCTGACTGTTTTTTGCGCACCTG
AATTCTTCTGGCATGGCCATGAGGGTCCTTATTTACACACGAGCAAAGCA
GAGGACCCTGCTGATGTAATTTTACAGGCGCTGGCGGACGCGTTTCCCGC
CAATGAGTATCCACATTGGTTGTTTATCTGTGGGACTGCTATCACTGCCC
GTGTCGAAAACAAGGAGAAACTCTACAATTTAAACTCTACCATAACACGA
AATGCTGTGGTGGAATCCCTGTGCCGACAACTAAGACATTGCTATGGACC
TCTGTCCGAGGTGATCATGGATATGCTGATCGGCTTTATTAAACATTGCC
ACGCTTACCCATTGCTGTCCGTCCGGAACAGAGCCTTGATTCTCGGCAGT
AATCTACATGATGTGCCAAACCAGGAACTGGCCACAAAAACCATGACTAC
AGAGAAATATTTCTGTAGCAATGAGGATTTCTTGCTTTACGAGGTGAACA
AACAGCCGGTGGTCACTGAGCAGGTATGTCgccgcgctctccttcttATC
CCCGATCCCGCAGAGTGCCCTGTACATTGCCCTTTATCCCGCCTTCTGGC
CTGTGACTCCATGATTTACCTCATTGACAGCGATTGAATAAGGCACCGAT
TGGATCGGTTCCCTTTTCATTGCTGGAACGTTGCCTCGTCTTCCAATGCT
CCCACCTTGGCTCCTCTGCTTTATGCGACTGATCCTCTCGCCATTCGCAC
CCTATCTCTCTCCCAAATGCCATATACGCCATCCATGTCTCATGCTTTGT
TACTCACACTATGTTTTTGCTTCTCAGATGGTCACCTATCAATCCATTGA
CCTGACTGCGGGGGACGTCAAGCGACACACACGGGACAAGTACGCAATTT
TCCAAGTAAGCCCTTCGCCGCTCGGTTCAGCTCCTGATTCCTTCATCCAA
AGTAAAGACAAGAGTAAGCAACCCCCCCCGGTTGAATCAGGGATTCCCAT
GACGGTGTcatggagggaaggtccCTCCGTGGGAGCAGAACGGGTGTTGG
ACGTGGCGGTAGAAATTTGCCTCGATCATCGTGATGTCCGGTTGCGGCGA
AACATTGGGAATCACCCATTCCACGTGCAATTGATCCCGTCTTGTGGGAT
GCAAATCAAGGAGAACGGGGCGGcagtggaagaggggggctTGATTTTCA
ACGTGGATGGGCAATACGCGATCGGCGGCACCTCCACTTCGGCCTCAGGC
CTCCCCCAGAGGGGAAAAGTAAATGAGGTACCCTGTCTCTTCACGAATTA
CGTCGATGAGACAAACGAAGGGTACGCAGGGCACACACAGCTTGCCCGTG
TGCAACGtcgggcggtgggggcgcaTGTATCGGCGAAAGGGAGTCGGAAT
GCCTCGTTTTATGAGGACTTGGGCACGGACGACGTGCGCGTGTTTCCCGT
CAAGGCCGTGCATAATCTCGCTTCTTTCTTCgcaggagggccaggggCTT
TACACATCTATGGATTCCATAAGCCTTTGCCATTGTACATGGACTGAGGT
GTTGGATTGTCAGTGGGTATCAGGGAATGCAaaatgatggggagggaaat
aaAGCCAaatgagagggaaagggtgatGCGAAAAATGAAATGGTAGCAAG
GGAAAAGTTaaacgaggtggaggaaggtccTGCCTTGTATGCTCTCACAC
TGAGATTCAAAAAGTACAGCCATGAAAAATAGGGACGCGACGTTCAGGTT
GCACACTGTTTTCACAAATCCTTTT

Coding sequence (CDS) from alignment at KK037258.1:85629..87953+

>rna9952 ID=rna9952|Name=rna9952|organism=Nannochloropsis gaditana|type=CDS|length=3270bp|location=Sequence derived from alignment at KK037258.1:85629..87953+ (Nannochloropsis gaditana)
ATGTGCATGCCAGAATTATCGACGGAGGCTCTTAGGCTCAGGAAGCTCTG
GTCGACCCCCGTGAAGGCTAAATGTCCCTTTATATCTCTCCAAAGGATCA
TGCATGGGAACGAAATAAATACAGACTATGCATGTCCAAGGAGTGCTAAA
AGATTTAAAGCAGGCGAGGAGCTTCCCTCCACACTCGCGAGCCTCCACTC
TACCAAGTACACTCATATCCGCTTCATTGGATATGTCATTCCGACTACGC
CCGCTAACATCGTCGCCGTGGGTGATCCTAATGGTCAAGGTGCCGTTGCA
GGTACTTATCTCGGTCATGAAAATGTACAAAAGGACATTCAAGGGCGTTT
GTCTGTCCTTCAAGTCGCCGTCAAGACTGCGAAAGCCCAGCTTCCTTCCA
ACGACGTGAATGGGACAGTGCTGACTGTTTTTTGCGCACCTGAATTCTTC
TGGCATGGCCATGAGGGTCCTTATTTACACACGAGCAAAGCAGAGGACCC
TGCTGATGTAATTTTACAGGCGCTGGCGGACGCGTTTCCCGCCAATGAGT
ATCCACATTGGTTGTTTATCTGTGGGACTGCTATCACTGCCCGTGTCGAA
AACAAGGAGAAACTCTACAATTTAAACTCTACCATAACACGAAATGCTGT
GGTGGAATCCCTGTGCCGACAACTAAGACATTGCTATGGACCTCTGTCCG
AGGTGATCATGGATATGCTGATCGGCTTTATTAAACATTGCCACGCTTAC
CCATTGCTGTCCGTCCGGAACAGAGCCTTGATTCTCGGCAGTAATCTACA
TGATGTGCCAAACCAGGAACTGGCCACAAAAACCATGACTACAGAGAAAT
ATTTCTGTAGCAATGAGGATTTCTTGCTTTACGAGGTGAACAAACAGCCG
GTGGTCACTGAGCAGATGGTCACCTATCAATCCATTGACCTGACTGCGGG
GGACGTCAAGCGACACACACGGGACAAGTACGCAATTTTCCAAGTAAGCC
CTTCGCCGCTCGGTTCAGCTCCTGATTCCTTCATCCAAAGTAAAGACAAG
AGTAAGCAACCCCCCCCGGTTGAATCAGGGATTCCCATGACGGTGTcatg
gagggaaggtccCTCCGTGGGAGCAGAACGGGTGTTGGACGTGGCGGTAG
AAATTTGCCTCGATCATCGTGATGTCCGGTTGCGGCGAAACATTGGGAAT
CACCCATTCCACGTGCAATTGATCCCGTCTTGTGGGATGCAAATCAAGGA
GAACGGGGCGGcagtggaagaggggggctTGATTTTCAACGTGGATGGGC
AATACGCGATCGGCGGCACCTCCACTTCGGCCTCAGGCCTCCCCCAGAGG
GGAAAAGTAAATGAGGTACCCTGTCTCTTCACGAATTACGTCGATGAGAC
AAACGAAGGGTACGCAGGGCACACACAGCTTGCCCGTGTGCAACGtcggg
cggtgggggcgcaTGTATCGGCGAAAGGGAGTCGGAATGCCTCGTTTTAT
GAGGACTTGGGCACGGACGACGTGCGCGTGTTTCCCGTCAAGGCCGTGCA
TAATCTCGCTTCTTTCTTCgcaggagggccaggggCTTTACACATCTATG
GATTCCATAAGCCTTTGCCATTGTACATGGACTGAATGTGCATGCCAGAA
TTATCGACGGAGGCTCTTAGGCTCAGGAAGCTCTGGTCGACCCCCGTGAA
GGCTAAATGTCCCTTTATATCTCTCCAAAGGATCATGCATGGGAACGAAA
TAAATACAGACTATGCATGTCCAAGGAGTGCTAAAAGATTTAAAGCAGGC
GAGGAGCTTCCCTCCACACTCGCGAGCCTCCACTCTACCAAGTACACTCA
TATCCGCTTCATTGGATATGTCATTCCGACTACGCCCGCTAACATCGTCG
CCGTGGGTGATCCTAATGGTCAAGGTGCCGTTGCAGGTACTTATCTCGGT
CATGAAAATGTACAAAAGGACATTCAAGGGCGTTTGTCTGTCCTTCAAGT
CGCCGTCAAGACTGCGAAAGCCCAGCTTCCTTCCAACGACGTGAATGGGA
CAGTGCTGACTGTTTTTTGCGCACCTGAATTCTTCTGGCATGGCCATGAG
GGTCCTTATTTACACACGAGCAAAGCAGAGGACCCTGCTGATGTAATTTT
ACAGGCGCTGGCGGACGCGTTTCCCGCCAATGAGTATCCACATTGGTTGT
TTATCTGTGGGACTGCTATCACTGCCCGTGTCGAAAACAAGGAGAAACTC
TACAATTTAAACTCTACCATAACACGAAATGCTGTGGTGGAATCCCTGTG
CCGACAACTAAGACATTGCTATGGACCTCTGTCCGAGGTGATCATGGATA
TGCTGATCGGCTTTATTAAACATTGCCACGCTTACCCATTGCTGTCCGTC
CGGAACAGAGCCTTGATTCTCGGCAGTAATCTACATGATGTGCCAAACCA
GGAACTGGCCACAAAAACCATGACTACAGAGAAATATTTCTGTAGCAATG
AGGATTTCTTGCTTTACGAGGTGAACAAACAGCCGGTGGTCACTGAGCAG
ATGGTCACCTATCAATCCATTGACCTGACTGCGGGGGACGTCAAGCGACA
CACACGGGACAAGTACGCAATTTTCCAAGTAAGCCCTTCGCCGCTCGGTT
CAGCTCCTGATTCCTTCATCCAAAGTAAAGACAAGAGTAAGCAACCCCCC
CCGGTTGAATCAGGGATTCCCATGACGGTGTcatggagggaaggtccCTC
CGTGGGAGCAGAACGGGTGTTGGACGTGGCGGTAGAAATTTGCCTCGATC
ATCGTGATGTCCGGTTGCGGCGAAACATTGGGAATCACCCATTCCACGTG
CAATTGATCCCGTCTTGTGGGATGCAAATCAAGGAGAACGGGGCGGcagt
ggaagaggggggctTGATTTTCAACGTGGATGGGCAATACGCGATCGGCG
GCACCTCCACTTCGGCCTCAGGCCTCCCCCAGAGGGGAAAAGTAAATGAG
GTACCCTGTCTCTTCACGAATTACGTCGATGAGACAAACGAAGGGTACGC
AGGGCACACACAGCTTGCCCGTGTGCAACGtcgggcggtgggggcgcaTG
TATCGGCGAAAGGGAGTCGGAATGCCTCGTTTTATGAGGACTTGGGCACG
GACGACGTGCGCGTGTTTCCCGTCAAGGCCGTGCATAATCTCGCTTCTTT
CTTCgcaggagggccaggggCTTTACACATCTATGGATTCCATAAGCCTT
TGCCATTGTACATGGACTGA

Synonyms

Publications