rna9949, rna9949 (mRNA) Nannochloropsis gaditana

Overview
Namerna9949
Unique Namerna9949
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length455
Alignment locationKK037258.1:71055..71414 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100622g2.9663.mrna
Orig protein idgnl|cribi|Naga_100622g2.9663
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:71055..71414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100622g2gene9651Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9949rna9949-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20754.1cds9918Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9949 ID=rna9949|Name=rna9949|organism=Nannochloropsis gaditana|type=mRNA|length=455bp
AAACAGAGAGCATACTAGCCAATGCCCGCTTGAGTTACTACGACTCCCAC
AAAAGATCATTTCTGCAGTCAGTCGAGACGATCACAGAGTCTTGAAGCCA
CCGTGTCATATTGAGATAGAATGCGCAATGGAGAAGATGGCGGAGGCCAT
GACCGGCGTGGAGGAGACGGAATGAATGCGGGACCCTCGGCTGCTCCCCA
TGAAGGAAGTAGGATGGACAACATGGGGCTCTATCACCCACAAAATCAAC
AGCAACAACAACGACACCATGAGCAACAACAGCAGCAGCATTATCAACAA
CAGCACCAGCAGTACCACCAACAGTACTACCCACCGGCAGGGTACCCCTA
TTATCCTCCCCCCCCCAAGCCGCATCCTGGTGGGTAGATTAGGGTCTGTC
TATTGCTTTCACACCGTCCGATTGCGGGCCCTCTCCGTGCGCACCCTGCC
CACAT
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protein sequence of rna9949

>rna9949-protein ID=rna9949-protein|Name=rna9949|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MKVTSRATRSIESREIHTHDKNCNVMLELISSYISICKLLIVVQSRKDPA
YPSSISTCLPLPNAHRCHYNERSSSVGMSNFACKAT
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mRNA from alignment at KK037258.1:71055..71414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9949 ID=rna9949|Name=rna9949|organism=Nannochloropsis gaditana|type=mRNA|length=360bp|location=Sequence derived from alignment at KK037258.1:71055..71414+ (Nannochloropsis gaditana)
ATGAAAGTGAGAATTTCATGCGCAATTTTTGGAATCGACTGTTCGGCCGA
TGTTAGGGTATCTCATGGAGCATTATACACTTTCATAGGAGGGGCATGAT
GATAGGTTACCTCACGAGCGACAAGGTCCATCGAAAGCCGGGAAATACAT
ACACACGATAAGAACTGTAATGTAATGTTAGAACTAATTTCTTCGTACAT
AAGCATTTGCAAGCTCCTCATTGTCGTACAATCAAGAAAGGACCCCGCCt
atccctcttccatctcaaCATGCTTGCCCTTGCCCAATGCTCATCGTTGT
CATTACAATGAACGGAGCTCAAGCGTAGGGATGAGCAATTTTGCATGCAA
AGCGACGTAA
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Coding sequence (CDS) from alignment at KK037258.1:71055..71414+

>rna9949 ID=rna9949|Name=rna9949|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at KK037258.1:71055..71414+ (Nannochloropsis gaditana)
ATGAAAGTTACCTCACGAGCGACAAGGTCCATCGAAAGCCGGGAAATACA
TACACACGATAAGAACTGTAATGTAATGTTAGAACTAATTTCTTCGTACA
TAAGCATTTGCAAGCTCCTCATTGTCGTACAATCAAGAAAGGACCCCGCC
tatccctcttccatctcaaCATGCTTGCCCTTGCCCAATGCTCATCGTTG
TCATTACAATGAACGGAGCTCAAGCGTAGGGATGAGCAATTTTGCATGCA
AAGCGACGTAAATGAAAGTTACCTCACGAGCGACAAGGTCCATCGAAAGC
CGGGAAATACATACACACGATAAGAACTGTAATGTAATGTTAGAACTAAT
TTCTTCGTACATAAGCATTTGCAAGCTCCTCATTGTCGTACAATCAAGAA
AGGACCCCGCCtatccctcttccatctcaaCATGCTTGCCCTTGCCCAAT
GCTCATCGTTGTCATTACAATGAACGGAGCTCAAGCGTAGGGATGAGCAA
TTTTGCATGCAAAGCGACGTAA
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Synonyms
Publications