rna993, rna993 (mRNA) Nannochloropsis gaditana

Overview
Namerna993
Unique Namerna993
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1389
Alignment locationCM002456.1:920461..921083 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100299g6.1146.mrna
Orig protein idgnl|cribi|Naga_100299g6.1146
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:920461..921083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100299g6gene956Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna993rna993-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29684.1cds992Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna993 ID=rna993|Name=rna993|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp
ATGTACGCAGGCACATCTTTTGCCTCAAGCAATCCTTATGTCCTGGGTGG
TTACAGAGCGTCCACGACAGGGAGCGCAGGCTCTAGCACGAGTACGGGCA
ACCCCCTCTCATCGCAGAGCCCAGACACATCTTGCCCCACCAGCTGGCCA
TCACAGGCACTACCGGCACCATCAAGTACACCCATTGACAGCATAAATCA
TCCGAGTACCTCGCTCTCGTCGACAGCGACCTCGCCGTCTCTGACGCCCA
TAGGAGCAGGGCTGCCTAGAAAACTACCCCCCAGCTCCACTCCCTATGGT
GGCGTAGGGCCTTTGTCGGGAGCCATTTCGCAGAAGAAAAGTACTACATG
TCCTTCCTCATTGGATGGAGAAGAGTGCGCGGCTGCATCGACCGCGGGCC
GCTTCTTCCCTGAGCCGCCATCCTCCTCGACGGCGTCGCCGATTTCGAAA
CAGTCAGCCTTGCCGTCACCCCCGCAATCATATTCGGTGGCTTCTTGCCT
TCCCACTGCAGCTAGCTCATCCTACACTCCCTATACGTCGGGGTGTGCTA
CTAAGGTCGCACCGGATACGAAGGCCCACGGCAAGAGGGATGGCCTCGAC
ACGTGCACCTCGACAGATTCAATTATGGCGCCGTCGGGAGGGGCATATCC
ATCCAACGCCGGGACCACTACATACCTGAGCGATGCGACCTCCAACAGAA
TCAATAGCATCCACTCCAGATCCCATTCGCACGGACAGGCCGCAGCCGCG
CGCTCGCCCTCCTCCGTCTCCCGAGGCGCCAGGAGGTCCGGCCGACCCGG
CAAGGCGAGTAACACCATCAAGGTGGAGGTTGTGGAGACAGACATGACGC
CCGGTGCCGATGGGCCCACGTATCACATCAAGCTGAATATGAATGGACGC
TCGTACATGGCCAAGCGTCATCACAACAAGCTTCGCTCTCTTGTGGAAGG
TCTGCGGGCGCGGGGTTACAGGGTCTGGCGCCCCTTTCCGGAAGTGGAGG
ACATGATGCGACAGTCACCTGTAAAGGTTGAGAACTCATTGGTCGAGGCA
CTGCCATTTTACGAGGGCTTCGGCTACTCGATCAAGAGCCTGGCATCGAC
CATGCTCAAGTCGACGTCGGCTTCCCACTTGCGAAAAAAGCGATCAGTTC
AGCTGGAGCAGATGTCGCAGCGGATTGATGCGTTTCTGAAGACGGTTTTT
CTGGAGAATGACGATTTGGAATACGAACAGGAAGTCTACCACTTTTTTTG
GGAGCCGCTCCAGAAGAAGCTACCTCCGGTAATGGAGGAAGATGTAAGCT
CCGATACGGAAGATGACACGGAGGAGGAAGAAGTGAACAGCAAGACCGCA
ACTCGTGCGCCAGGCATGTCCTCTCTACCCTCGAAATGA
back to top

protein sequence of rna993

>rna993-protein ID=rna993-protein|Name=rna993|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MGLTETDIAYLVGMSVAGLAFNVQVKRSVTNSIPNLTAWRELGFGLVSHC
SGGHIGTTSHGMQRKGGHHGARGVELKQCTAPTRLSVDVTLDMALGTRGF
LCFFVVEAQEETIQGALNCHKALPLIDRGNVGESRGREERLSRSRKSESI
HLSCDIHRAPRSG
back to top

mRNA from alignment at CM002456.1:920461..921083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna993 ID=rna993|Name=rna993|organism=Nannochloropsis gaditana|type=mRNA|length=623bp|location=Sequence derived from alignment at CM002456.1:920461..921083+ (Nannochloropsis gaditana)
ATGGGATTAACCGAGACCGATATTGTGTGAAAAATAGTCATTGCGTGGCT
TCCGGGTTCAAAAGCCCTCAAATATCGCTGAGAAGTGTGCACAGAGGCCT
ATCTAGTCGGTATGAGTGTCGCAGGACTGGCATTTAATGTACAGGTGAAA
AGATCTGTTACTAACTCTATTCCTAACCTTACGGCGTGGCGCGAGCTCGG
ATTCGGATTAGTGAGCCACTGCAGTGGTGGCCATATTGGTACGACGTCTC
ATGGGATgcagagaaagggggggcacCATGGAGCCCGCGGCGTGGAGTTG
AAACAATGTACCGCCCCAACTAGGCTGAGCGTTGACGTGACTCTAGACAT
GGCCTTAGGAACAAGGGGctttctttgcttttttGTTGTCGAAGCTCAAG
AAGAGACTATACAAGTAATGTTTCCTTCGTGAGACGAACACGCAAGAGGC
TGCGAAGAGGCAAGTGTTCTTAGGGCGCATTAAATTGTCATAAGGCGCTG
CCTCTGATCGACCGAGGTAATGTGGGCGAGAGTCGTGGCCGTGAGGAAAG
ATTATCTAGATCTAGGAAGTCAGAAAGCATCCATTTGTCGTGCGATATAC
ACCGCGCCCCACGGTCAGGCTGA
back to top

Coding sequence (CDS) from alignment at CM002456.1:920461..921083+

>rna993 ID=rna993|Name=rna993|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002456.1:920461..921083+ (Nannochloropsis gaditana)
ATGGGATTAACCGAGACCGATATTGCCTATCTAGTCGGTATGAGTGTCGC
AGGACTGGCATTTAATGTACAGGTGAAAAGATCTGTTACTAACTCTATTC
CTAACCTTACGGCGTGGCGCGAGCTCGGATTCGGATTAGTGAGCCACTGC
AGTGGTGGCCATATTGGTACGACGTCTCATGGGATgcagagaaagggggg
gcacCATGGAGCCCGCGGCGTGGAGTTGAAACAATGTACCGCCCCAACTA
GGCTGAGCGTTGACGTGACTCTAGACATGGCCTTAGGAACAAGGGGcttt
ctttgcttttttGTTGTCGAAGCTCAAGAAGAGACTATACAAGGCGCATT
AAATTGTCATAAGGCGCTGCCTCTGATCGACCGAGGTAATGTGGGCGAGA
GTCGTGGCCGTGAGGAAAGATTATCTAGATCTAGGAAGTCAGAAAGCATC
CATTTGTCGTGCGATATACACCGCGCCCCACGGTCAGGCTGAATGGGATT
AACCGAGACCGATATTGCCTATCTAGTCGGTATGAGTGTCGCAGGACTGG
CATTTAATGTACAGGTGAAAAGATCTGTTACTAACTCTATTCCTAACCTT
ACGGCGTGGCGCGAGCTCGGATTCGGATTAGTGAGCCACTGCAGTGGTGG
CCATATTGGTACGACGTCTCATGGGATgcagagaaagggggggcacCATG
GAGCCCGCGGCGTGGAGTTGAAACAATGTACCGCCCCAACTAGGCTGAGC
GTTGACGTGACTCTAGACATGGCCTTAGGAACAAGGGGctttctttgctt
ttttGTTGTCGAAGCTCAAGAAGAGACTATACAAGGCGCATTAAATTGTC
ATAAGGCGCTGCCTCTGATCGACCGAGGTAATGTGGGCGAGAGTCGTGGC
CGTGAGGAAAGATTATCTAGATCTAGGAAGTCAGAAAGCATCCATTTGTC
GTGCGATATACACCGCGCCCCACGGTCAGGCTGAATGGGATTAACCGAGA
CCGATATTGCCTATCTAGTCGGTATGAGTGTCGCAGGACTGGCATTTAAT
GTACAGGTGAAAAGATCTGTTACTAACTCTATTCCTAACCTTACGGCGTG
GCGCGAGCTCGGATTCGGATTAGTGAGCCACTGCAGTGGTGGCCATATTG
GTACGACGTCTCATGGGATgcagagaaagggggggcacCATGGAGCCCGC
GGCGTGGAGTTGAAACAATGTACCGCCCCAACTAGGCTGAGCGTTGACGT
GACTCTAGACATGGCCTTAGGAACAAGGGGctttctttgcttttttGTTG
TCGAAGCTCAAGAAGAGACTATACAAGGCGCATTAAATTGTCATAAGGCG
CTGCCTCTGATCGACCGAGGTAATGTGGGCGAGAGTCGTGGCCGTGAGGA
AAGATTATCTAGATCTAGGAAGTCAGAAAGCATCCATTTGTCGTGCGATA
TACACCGCGCCCCACGGTCAGGCTGA
back to top
Synonyms
Publications