rna992, rna992 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna992
Unique Name	rna992
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3311
Alignment location	CM002456.1:919047..920435 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100299g7.1142.mrna
Orig protein id	gnl\|cribi\|Naga_100299g7.1142
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:919047..920435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100299g7	gene955	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna992	rna992-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29680.1	cds991	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:919047..920435+
coding sequence from alignment at CM002456.1:919047..920435+

mRNA sequence

>rna992 ID=rna992|Name=rna992|organism=Nannochloropsis gaditana|type=mRNA|length=3311bp
TGGACACGAGCCTATGTTATTGATGATTGTATTCACAAATGTGACCTCTT
TCTGAAACTTTTTATTTGTTGTATCTGTACACAGGAGCACGAAGAATCAT
GCAACAATTAGCGCAGCGGACAAAACTCAAAGAAGGAATAGAGCTCCTCT
GAAGACGGCAGTCGCGGAGGATTAGTGATACGAAAGGGCCAGCAGAGCAG
AACATAGCGTAAAAAGTCGAGTAAAAGGGAGATTGCGGGAAATTAAGACA
TCTGTGGGTTCTGTCACCCTTTGTGAGGGCGACATTCTTCCACCTCCCTT
ATTTGCATCGTTGGAATTATGGCTACCACCCCTGCGGCATATGCACCGCA
GCAGCCCCCCTCGATCCAGACACCACCATCAGCAACAGCACAAAGTATGC
CACACCCTGCTGCTATGGCCGCCCCCATCGCACCGCAACCATCGATTGGC
CCTGCGCGGTGCTTGTATCCCTTCCAACCGTCCACCGGGAATGGAATGGG
GAACATGAATAATCCTCAAGGCAGTGACAATGGCAATGAGAATTTCATCG
AAGCTCACAGTGATGCCCTCAAAGATAGCAGTAGCACCCGGAATCGGAGC
GATCTTGTCCTGAGCCGCCCCTCTAGCGCGCCGATGTTGGCGGAAATATG
TGCCGCGGCTGAAGGAGGGGGCAGCGATGTGCCCCTGACTCGTGATAGAG
AAGCCTTTGCTTGGCACCAGAAAGAACTCCCAGCAGCGGCAGTGAGCGGG
CTGGATGAGGAGGGGAAGGGCGGCCATGTGGTAGCCTCGGCCTCGCGAAG
CACCACCAAGGCTCTCCTTCGCAAGCTCGGTATCCTCGCACCACCTGCCT
CGACGAGTGCTTGCGCTCGCAGCGTGGCTACCAGGGCTGTCCAAGGATGG
CAAATGGCGAATAAACAGGGAGCTTCGGAGGCAGGCGCCGCCCGGGGGCC
GCCAACGCGGGGGCCACGCACTTTGAGAGCCCCGGCTCGCGCCTCGCATT
CTAGCACCGACCCCGCCTCTGCCTGGAAGGACCGCGCCAGCAACGGTCAG
GAAGAGAGCGACATCGTGGACCGGGTCAACGGCGTGCCTAGGGACCTGGA
GCTCCAAAACAAACGCATCACAGGCCCGCAGGCGAAGAAGCTCTGCGCAG
CCCTCGCCACCGACACCAGTCTCGTGAGTCTCAAGGTGGGCTGCAACGAG
CTGGGAGACGAGGGGGCCGAGGCCGTGGCACAGGCGCTGGCTCATCATCC
CTCCCTCATCACGCTGGATTTGGGCTTTAACGGCATCGGTGACAGGGGCG
CGGAAGCTCTTGCTGGGAGTCTCTGGTCCAACCGGCGGCTTAAGACCCTC
TACCTCTCAGGGAACTGCATCGGCGTCCGAGGCGCTCAAGCCCTGGGCCG
GGCGCTCCAGCAGAATATGAGTCTCGAAGTGCTGCATTTGACGGGGAACG
CGGTCAGTGCGGGGGGAGCTGCCCTGATGGGACAAGGGCTGGCGCACAAT
CGCTCATTGCGGAGCCTGTACCTGGCTGGGAACGCCCTCGGCCCCCAGGG
AAGCGCGGAACTTTTCGGGGGCTTGGCGCGAAATGCGGGCCTGGAGTGCT
TATTTTTGAGCGATAGTGGGATCGGAGACGAGGGCGCCGTGGCACTTGCA
GGGGCTTTGCTGCGACATCGGCGCTTGCGGGTTCTGGAGCTCGGCTTCAA
TCGCCTCACGGCCGTGGGTATCGCTCCCCTCCTGGCCGCTTTGCAAGGGT
GCACTCATCTGCAGGTCTTGCGCCTTGACAACAACGAGGTGGACAACGGG
GGCGCGGCGGAGGTGGCTAGGGCCTTGCACGCGCTCACCGATCTACAGGT
CCTGGACGTGGGGTTCAACGCCATGCGCTCCGACGGCGTCGCCACGCTAA
TGCGGGCTGTGGCGGGACACGCCAGCCTCCGGGCCTTGACCCTCTCGGGG
AACACGCTCAAGACCGAAGGCGCCAAGGCGGTGGCCGAGGCTTTGCTCCA
GAACAACTGCCTCCAAGAGCTCTACCTCGACCATACCTCCATCGGCAGTG
CGGGGGAGCGATTCTTGGCGTCAGGACTGGCGGGGAACCCGTGTCTGGGT
TTGTGCGTCCTCACAGGTCTGCGGCTGGGCAATGTGTTGGCGCGTCTTGG
CGGGGGTCAACCACAGGGTTTGGACGCGTTAAGTAACGAGCAGAGCTTGG
CGTTCCTGCGCCTGAAACGGCGGGAGCCCGAGGCGGACGTGCGTCAGTTG
GTAGCGATGGTGGCGGCCAGGATGCCGGCAGCACGCAATTCTGCGTCTTC
CCCTCGGACACCAGCCTCCTGGTCGGTCCAAGGGGGGGGGGGATGTGAGG
GAGGAGCCGCGACGAAAGGGGAGGAGAAGGCGGGGCTGGGTGCAAGCGGC
GGAGGTGGGTGGGATGAGACCGCCATGATGATGTTGAGCACCCCCCCCTT
GCCCACGTTCTACTCTCGGAGCGGCGGTCAGGAGAAACATGCACACAGAC
CACGGGATCAAGTCCATCCCCCCGACGGTATGGCCGCGGGCTCTCTTCCC
CCCGCGCTGGCATGTGGCCTCGTCAATTGCACAAAAGCGCCCTTTGATGG
TGCGGAGCTGTCTGCCCTGCACCACTTTTACTTCTCTCCGCCCCCCAATG
CTGTTGGGACGGCGATGGGTACGGTTAGCCCCCCAGGGCAGCACTATTAC
CACCACCGCGGTTCTCTGATAGGGGGACGTCGGGATGAAGCCGAGGCCGA
AGCCGCCGCTGCCTACGCGCAGCAGCAGAATGCACTCGAAAGCGCAAGCT
CTGGTCAGGAGAGACTTGCCGCGGGCAGTGCAAGTGAGAATGCAGCTGCC
ATTGCGGGCAACAAGGTCATGATGATGATGCGGGTGGAGAGTGAAGCGCA
TTTGCCTCCAACGAAGCGACAGTGCAACCTCAACTCCCGCGTGCGGGTGG
CCGCTTACCCGCATTTACAGCGCCGGCTGGAAGTCATGCTCAGCAACCGG
GGGAGGGAGGAGCCTCAGGTCTTGACCCTCTTGCGTCAACTGCGCTTTCT
GGAGGAGAACGTGGGACCTGCAAGTAAGCCGTGTTACACTCCAGAGACCC
TGGAGAACGTGCTCTTGCGCTCCTTGTCGACAGCAACGGCGGATACACGG
GGAAAAGGCACTTGATATGAAAACATACGTTGTGGGAAATGAGATCGTGT
CGCACTTCTTCTGGCATCTTTTGTGCTGTACACAGCGAGATGGAATTGAG
CCTTAGTTGCTTGTCACACTTTGTAAACCAAGAAACGAAAATACGCAACA
GCCCATATGAG

protein sequence of rna992

>rna992-protein ID=rna992-protein|Name=rna992|organism=Nannochloropsis gaditana|type=polypeptide|length=462bp
MYAGTSFASSNPYVLGGYRASTTGSAGSSTSTGNPLSSQSPDTSCPTSWP
SQALPAPSSTPIDSINHPSTSLSSTATSPSLTPIGAGLPRKLPPSSTPYG
GVGPLSGAISQKKSTTCPSSLDGEECAAASTAGRFFPEPPSSSTASPISK
QSALPSPPQSYSVASCLPTAASSSYTPYTSGCATKVAPDTKAHGKRDGLD
TCTSTDSIMAPSGGAYPSNAGTTTYLSDATSNRINSIHSRSHSHGQAAAA
RSPSSVSRGARRSGRPGKASNTIKVEVVETDMTPGADGPTYHIKLNMNGR
SYMAKRHHNKLRSLVEGLRARGYRVWRPFPEVEDMMRQSPVKVENSLVEA
LPFYEGFGYSIKSLASTMLKSTSASHLRKKRSVQLEQMSQRIDAFLKTVF
LENDDLEYEQEVYHFFWEPLQKKLPPVMEEDVSSDTEDDTEEEEVNSKTA
TRAPGMSSLPSK

mRNA from alignment at CM002456.1:919047..920435+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna992 ID=rna992|Name=rna992|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp|location=Sequence derived from alignment at CM002456.1:919047..920435+ (Nannochloropsis gaditana)
ATGTACGCAGGCACATCTTTTGCCTCAAGCAATCCTTATGTCCTGGGTGG
TTACAGAGCGTCCACGACAGGGAGCGCAGGCTCTAGCACGAGTACGGGCA
ACCCCCTCTCATCGCAGAGCCCAGACACATCTTGCCCCACCAGCTGGCCA
TCACAGGCACTACCGGCACCATCAAGTACACCCATTGACAGCATAAATCA
TCCGAGTACCTCGCTCTCGTCGACAGCGACCTCGCCGTCTCTGACGCCCA
TAGGAGCAGGGCTGCCTAGAAAACTACCCCCCAGCTCCACTCCCTATGGT
GGCGTAGGGCCTTTGTCGGGAGCCATTTCGCAGAAGAAAAGTACTACATG
TCCTTCCTCATTGGATGGAGAAGAGTGCGCGGCTGCATCGACCGCGGGCC
GCTTCTTCCCTGagccgccatcctcctcgacggCGTCGCCGATTTCGAAA
CAGTCAGCCTTGCCGTCACCCCCGCAATCATATTCGGTGGCTTCTTGCCT
TCCCACTGCAGCTAGCTCATCCTACACTCCCTATACGTCGGGGTGTGCTA
CTAAGGTCGCACCGGATACGAAGGCCCACGGCAAGAGGGATGGCCTCGAC
ACGTGCACCTCGACAGATTCAATTATGGCGCCGTCGGGAGGGGCATATCC
ATCCAACGCCGGGACCACTACATACCTGAGCGATGCGACCTCCAACAGAA
TCAATAGCATCCACTCCAGATCCCATTCGCACGGACAGGCCGCAGCCGcg
cgctcgccctcctccgtctcccgaGGCGCCAGGAGGTCCGGCCGACCCGG
CAAGGCGAGTAACACCATCAAGGTGGAGGTTGTGGAGACAGACATGACGC
CCGGTGCCGATGGGCCCACGTATCACATCAAGCTGAATATGAATGGACGC
TCGTACATGGCCAAGCGTCATCACAACAAGCTTCGCTCTCTTGTGGAAGG
TCTGCGGGCGCGGGGTTACAGGGTCTGGCGCCCCTTTCCGGAAGTGGAGG
ACATGATGCGACAGTCACCTGTAAAGGTTGAGAACTCATTGGTCGAGGCA
CTGCCATTTTACGAGGGCTTCGGCTACTCGATCAAGAGCCTGGCATCGAC
CATGCTCAAGTCGACGTCGGCTTCCCACTTGCGAAAAAAGCGATCAGTTC
AGCTGGAGCAGATGTCGCAGCGGATTGATGCGTTTCTGAAGACGGTTTTT
CTGGAGAATGACGATTTGGAATACGAACAGGAAGTCTACCACTTTTTTTG
GGAGCCGCTCCAGAAGAAGCTACCTCCGGtaatggaggaagatgtaAGCT
CCGATACGGAAGatgacacggaggaggaagaagtgaaCAGCAAGACCGCA
ACTCGTGCGCCAGGCATGTCCTCTCTACCCTCGAAATGA

Coding sequence (CDS) from alignment at CM002456.1:919047..920435+

>rna992 ID=rna992|Name=rna992|organism=Nannochloropsis gaditana|type=CDS|length=1389bp|location=Sequence derived from alignment at CM002456.1:919047..920435+ (Nannochloropsis gaditana)
ATGTACGCAGGCACATCTTTTGCCTCAAGCAATCCTTATGTCCTGGGTGG
TTACAGAGCGTCCACGACAGGGAGCGCAGGCTCTAGCACGAGTACGGGCA
ACCCCCTCTCATCGCAGAGCCCAGACACATCTTGCCCCACCAGCTGGCCA
TCACAGGCACTACCGGCACCATCAAGTACACCCATTGACAGCATAAATCA
TCCGAGTACCTCGCTCTCGTCGACAGCGACCTCGCCGTCTCTGACGCCCA
TAGGAGCAGGGCTGCCTAGAAAACTACCCCCCAGCTCCACTCCCTATGGT
GGCGTAGGGCCTTTGTCGGGAGCCATTTCGCAGAAGAAAAGTACTACATG
TCCTTCCTCATTGGATGGAGAAGAGTGCGCGGCTGCATCGACCGCGGGCC
GCTTCTTCCCTGagccgccatcctcctcgacggCGTCGCCGATTTCGAAA
CAGTCAGCCTTGCCGTCACCCCCGCAATCATATTCGGTGGCTTCTTGCCT
TCCCACTGCAGCTAGCTCATCCTACACTCCCTATACGTCGGGGTGTGCTA
CTAAGGTCGCACCGGATACGAAGGCCCACGGCAAGAGGGATGGCCTCGAC
ACGTGCACCTCGACAGATTCAATTATGGCGCCGTCGGGAGGGGCATATCC
ATCCAACGCCGGGACCACTACATACCTGAGCGATGCGACCTCCAACAGAA
TCAATAGCATCCACTCCAGATCCCATTCGCACGGACAGGCCGCAGCCGcg
cgctcgccctcctccgtctcccgaGGCGCCAGGAGGTCCGGCCGACCCGG
CAAGGCGAGTAACACCATCAAGGTGGAGGTTGTGGAGACAGACATGACGC
CCGGTGCCGATGGGCCCACGTATCACATCAAGCTGAATATGAATGGACGC
TCGTACATGGCCAAGCGTCATCACAACAAGCTTCGCTCTCTTGTGGAAGG
TCTGCGGGCGCGGGGTTACAGGGTCTGGCGCCCCTTTCCGGAAGTGGAGG
ACATGATGCGACAGTCACCTGTAAAGGTTGAGAACTCATTGGTCGAGGCA
CTGCCATTTTACGAGGGCTTCGGCTACTCGATCAAGAGCCTGGCATCGAC
CATGCTCAAGTCGACGTCGGCTTCCCACTTGCGAAAAAAGCGATCAGTTC
AGCTGGAGCAGATGTCGCAGCGGATTGATGCGTTTCTGAAGACGGTTTTT
CTGGAGAATGACGATTTGGAATACGAACAGGAAGTCTACCACTTTTTTTG
GGAGCCGCTCCAGAAGAAGCTACCTCCGGtaatggaggaagatgtaAGCT
CCGATACGGAAGatgacacggaggaggaagaagtgaaCAGCAAGACCGCA
ACTCGTGCGCCAGGCATGTCCTCTCTACCCTCGAAATGA

Synonyms

Publications