rna9919, rna9919 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9919
Unique Name	rna9919
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1713
Alignment location	KK037257.1:123371..125486 +

Link to JBrowse

Properties


Property Name	Value
Product	Isopenicillin N synthase
Orig transcript id	gnl\|cribi\|Naga_100423g3.2496.mrna
Orig protein id	gnl\|cribi\|Naga_100423g3.2496
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:123371..125486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100423g3	gene9624	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9919	rna9919-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20785.1	cds9888	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:123371..125486+
coding sequence from alignment at KK037257.1:123371..125486+

mRNA sequence

>rna9919 ID=rna9919|Name=rna9919|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp
ATCCCCTAAGATGAATGAAAAGTGAGTAATTGCGGGATGTTCCGTGGTCC
CTGTGTAGGTTTCGCTCTTAATCTCCTTACCCCCCTTCGGGTTATTTTCA
TTTCACTCGTAACACTCACGGTCGATTTTACGTTAATCTTCATTTCCATT
CAATAGACATATTTTCATGTCATCCTCTGCAACTTCTACACCTCAAGTAT
TGTCGCTGCACGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGGCT
GCGCCCGAGGAAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTTGG
ATTTTTCTACCTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGACA
TGCTTACAGAGTCCAAGGTGGATATTTTTCTCTCTGAATGCCATGTGTGA
AATGTTGGAGGGGGACACCTGAATTCTCCTTCGTTGTCCTGCCTCCGCGA
CATGCATTTATGCGATAAATTGGATGGACCTATACCATACAATGGGTTTT
TGTTGCTCAATTTACTTTTTAAAAGCGGTGATTCTCCCCTTTTATTCCCG
TGTCTTTCTTCGTCTTCCTGAATATCTTTTTGTGCAACATCGATCCGGTA
GCTACCTGTACCCAAGGTATTTTTCCGGGTGCGTCCCGGCTTCCTGTGTT
ACGAGGAGCTATCGTCCTTTGTTCTTTAGGTTCATCACCTCGAGAGAGAT
TTCAACCTACCAACTACGATTCCGTCTCACCGTGTTTCCCTTTTCGTCAT
TCGTTTCCGGGCAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAA
GTCTCCGTCCGGCACAACAAGATCAATCGGGGATACACCGCCTTCGAAGA
GGAGACTCTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTT
TCTACCTGGGGAGGGAGGTAGCCATGGAGAGTGAGGAGGCGCGAAGCTTT
CCTTTGCACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTG
GAGACCCGTCATGAACGCCTATTTTACTGCCCTCTCTTCCCTCGGCCTTC
GGACGGTCCGTCTCCTCCTCCGCGCCCTGGGGTTGCCAGAGCACCATCTC
GACGACACGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGCACTATTC
GACACAGGCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCCACA
CGGACTACGGTATGTTCACCTTCCTCATGACGGACCATACGCCCGGCTTA
CAGGTCTGGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGAGGT
GCCGGCGGTGGAAGGGGCATTCATTGTGAACCTGGGAGACATGCTCCAAC
GATGGACGAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGATCCAG
GAGGCGACAGAGGAAGGACGGTACAGCGCCCCGTTTTTTTACGAGCCCAA
TTTTGATACCTTGGTGGCCTGCTTGCCGGGCTTTGTCAAGGAAGGCGAGG
TCCCCCGCCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAGTAC
CGACAGACCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCACACCCT
TGAAAATCACGCAGGCTAACGCACGCAAGAAAAATGATTTTAGAAAAACA
GAAAGGAAAAATATGTACAGGTCATGATTCCAAAAAGAAAGACTCCTTCG
TATGATTTCTTGC

protein sequence of rna9919

>rna9919-protein ID=rna9919-protein|Name=rna9919|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MSSSATSTPQVLSLHALNRAALPIVDLAAPEEAPRILYDACRDFGFFYLI
NHGVPQALIDDMLTESKAFFSLPLDEKEKVSVRHNKINRGYTAFEEETLD
PTRQTRGDTKEGFYLGREVAMESEEARSFPLHGPNVWPDPVKLPRWRPVM
NAYFTALSSLGLRTVRLLLRALGLPEHHLDDTFTRPMAALRLLHYSTQAS
NPSEGVYAAGAHTDYGMFTFLMTDHTPGLQVWRGGAGQEDGSWQEVPAVE
GAFIVNLGDMLQRWTNDVFKSTAHRVVIQEATEEGRYSAPFFYEPNFDTL
VACLPGFVKEGEVPRHVPIKSGEYLLGKYRQTHRDFVEKADDNHTLENHA
G

mRNA from alignment at KK037257.1:123371..125486+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9919 ID=rna9919|Name=rna9919|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp|location=Sequence derived from alignment at KK037257.1:123371..125486+ (Nannochloropsis gaditana)
ATCCCCTAAGATGAATGAAAAGTGAGTAATTGCGGGATGTTCCGTGGTCC
CTGTGTAGGTTTCGCTCTTAATCTCCTTACCCCCCTTCGGGTTATTTTCA
TTTCACTCGTAACACTCACGGTCGATTTTACGTTAATCTTCATTTCCATT
CAATAGACATATTTTCATGTCATCCTCTGCAACTTCTACACCTCAAGTAT
TGTCGCTGCACGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGGCT
GCGCCCGAGGAAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTTGG
ATTTTTCTACCTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGACA
TGCTTACAGAGTCCAAGGTGGATATTTTTCTCTCTGAATGCCATGTGTGA
AATGTTGGAGGGGGACACCTGAATTCTCCTTCGTTGTCCTGCCTCCGCGA
CATGCATTTATGCGATAAATTGGATGGACCTATACCATACAATGGGTTTT
TGTTGCTCAATTTACTTTTTAAAAGCGGTGATTCTCCCCTTTTATTCCCG
TGtctttcttcgtcttcctgaATATCTTTTTGTGCAACATCGATCCGGTA
GCTACCTGTACCCAAGGTATTTTTCCGGGTGCGTCCCGGCTTCCTGTGTT
ACGAGGAGCTATCGTCCTTTGTTCTTTAGGTTCATCACCTCGAGAGAGAT
TTCAACCTACCAACTACGATTCCGTCTCACCGTGTTTCCCTTTTCGTCAT
TCGTTTCCGGGCAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAA
GTCTCCGTCCGGCACAACAAGATCAATCGGGGATACACCGCCTTCGAAGA
GGAGACTCTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTT
TCTacctggggagggaggtagccatggagagtgaggaggcgCGAAGCTTT
CCTTTGCACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTG
GAGACGTAAGTATAGGGCAGAGtcaaggagcgaggggcgTGTTCCTTGGG
ATGGGatggcgtggtggtggctATGGGcgtgaagggggggaggcaagaaT
GGGCTGTCGGATGGAAAAACGTCCGAGGTTTGCGGGGCTGGCCGTAGGCA
TCTTGGCCATCCTCTCTTGTCCTCTCAACccaatgcctcccttttttaAA
TGAGGCATCTAGCATTCCACCTCCCGATTGTCAACATttcatctcccccc
tcttttttctaGCCGTCATGAACGCCTATTTTactgccctctcttccctc
ggcCTTCGGAcggtccgtctcctcctccgcgccctgGGGTTGCCAGAGCA
CCATCTCGACGACACGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGC
ACTATTCGACACAGGTCAGAtgtctcccctctttcggGCATGCAGCTCAT
gttttgccctccccccctcccgtaCTACCTCCGTGCCCCCCCATGCCATC
CGTGGGCAGGTAGGATGGACCCTGGCTTCCTCTCATTCACCTTTCGTGGA
ATTAACACAGGCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCC
ACACGGACTACGGTATGTTCACCTTCCTCATGACGGACCATACGCCCGGC
TTACAGGTCTGGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGA
GGTgccggcggtggaaggggcatTCATTGTGAACCTGGGAGACATGCTCC
AACGATGGACGAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGATC
CAGGAGGcgacagaggaaggacggtACAGCGCCCCGTTTTTTTACGAGCC
CAATTTTGATACCTTGGTGGCCTGCTTGCCGGGCTTtgtcaaggaaggcg
aggtccCCCGCCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAG
TACCGACAGACCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCACAC
CCTTGAAAATCACGCAGGCTAACGCACGCAAGAAAAATGATTTTAGAAAa
acagaaaggaaaaatatgTACAGGTCATGATTCCAAAAAGAAAGACTCCT
TCGTATGATTTCTTGC

Coding sequence (CDS) from alignment at KK037257.1:123371..125486+

>rna9919 ID=rna9919|Name=rna9919|organism=Nannochloropsis gaditana|type=CDS|length=4224bp|location=Sequence derived from alignment at KK037257.1:123371..125486+ (Nannochloropsis gaditana)
ATGTCATCCTCTGCAACTTCTACACCTCAAGTATTGTCGCTGCACGCTTT
GAACCGCGCTGCATTGCCCATTGTCGACCTGGCTGCGCCCGAGGAAGCCC
CGCGCATCCTGTACGACGCCTGTCGGGACTTTGGATTTTTCTACCTGATC
AACCATGGGGTACCTCAGGCCCTTATCGACGACATGCTTACAGAGTCCAA
GGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAAGTCTCCGTCCGGC
ACAACAAGATCAATCGGGGATACACCGCCTTCGAAGAGGAGACTCTGGAC
CCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTTTCTacctggggag
ggaggtagccatggagagtgaggaggcgCGAAGCTTTCCTTTGCACGGCC
CAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTGGAGACCCGTCATG
AACGCCTATTTTactgccctctcttccctcggcCTTCGGAcggtccgtct
cctcctccgcgccctgGGGTTGCCAGAGCACCATCTCGACGACACGTTCA
CCCGGCCGATGGCAGCGTTACGGCTCTTGCACTATTCGACACAGGCATCG
AACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCCACACGGACTACGGTAT
GTTCACCTTCCTCATGACGGACCATACGCCCGGCTTACAGGTCTGGCGGG
GTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGAGGTgccggcggtggaa
ggggcatTCATTGTGAACCTGGGAGACATGCTCCAACGATGGACGAACGA
TGTGTTCAAGTCCACAGCGCACCGTGTGGTGATCCAGGAGGcgacagagg
aaggacggtACAGCGCCCCGTTTTTTTACGAGCCCAATTTTGATACCTTG
GTGGCCTGCTTGCCGGGCTTtgtcaaggaaggcgaggtccCCCGCCACGT
CCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAGTACCGACAGACCCACA
GGGACTTTGTCGAAAAAGCGGACGACAACCACACCCTTGAAAATCACGCA
GGCTAAATGTCATCCTCTGCAACTTCTACACCTCAAGTATTGTCGCTGCA
CGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGGCTGCGCCCGAGG
AAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTTGGATTTTTCTAC
CTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGACATGCTTACAGA
GTCCAAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAAGTCTCCG
TCCGGCACAACAAGATCAATCGGGGATACACCGCCTTCGAAGAGGAGACT
CTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTTTCTacct
ggggagggaggtagccatggagagtgaggaggcgCGAAGCTTTCCTTTGC
ACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTGGAGACCC
GTCATGAACGCCTATTTTactgccctctcttccctcggcCTTCGGAcggt
ccgtctcctcctccgcgccctgGGGTTGCCAGAGCACCATCTCGACGACA
CGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGCACTATTCGACACAG
GCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCCACACGGACTA
CGGTATGTTCACCTTCCTCATGACGGACCATACGCCCGGCTTACAGGTCT
GGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGAGGTgccggcg
gtggaaggggcatTCATTGTGAACCTGGGAGACATGCTCCAACGATGGAC
GAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGATCCAGGAGGcga
cagaggaaggacggtACAGCGCCCCGTTTTTTTACGAGCCCAATTTTGAT
ACCTTGGTGGCCTGCTTGCCGGGCTTtgtcaaggaaggcgaggtccCCCG
CCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAGTACCGACAGA
CCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCACACCCTTGAAAAT
CACGCAGGCTAAATGTCATCCTCTGCAACTTCTACACCTCAAGTATTGTC
GCTGCACGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGGCTGCGC
CCGAGGAAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTTGGATTT
TTCTACCTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGACATGCT
TACAGAGTCCAAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAAG
TCTCCGTCCGGCACAACAAGATCAATCGGGGATACACCGCCTTCGAAGAG
GAGACTCTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTTT
CTacctggggagggaggtagccatggagagtgaggaggcgCGAAGCTTTC
CTTTGCACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTGG
AGACCCGTCATGAACGCCTATTTTactgccctctcttccctcggcCTTCG
GAcggtccgtctcctcctccgcgccctgGGGTTGCCAGAGCACCATCTCG
ACGACACGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGCACTATTCG
ACACAGGCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCCACAC
GGACTACGGTATGTTCACCTTCCTCATGACGGACCATACGCCCGGCTTAC
AGGTCTGGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGAGGTg
ccggcggtggaaggggcatTCATTGTGAACCTGGGAGACATGCTCCAACG
ATGGACGAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGATCCAGG
AGGcgacagaggaaggacggtACAGCGCCCCGTTTTTTTACGAGCCCAAT
TTTGATACCTTGGTGGCCTGCTTGCCGGGCTTtgtcaaggaaggcgaggt
ccCCCGCCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAGTACC
GACAGACCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCACACCCTT
GAAAATCACGCAGGCTAAATGTCATCCTCTGCAACTTCTACACCTCAAGT
ATTGTCGCTGCACGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGG
CTGCGCCCGAGGAAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTT
GGATTTTTCTACCTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGA
CATGCTTACAGAGTCCAAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAG
AGAAAGTCTCCGTCCGGCACAACAAGATCAATCGGGGATACACCGCCTTC
GAAGAGGAGACTCTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGA
AGGTTTCTacctggggagggaggtagccatggagagtgaggaggcgCGAA
GCTTTCCTTTGCACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCG
AGGTGGAGACCCGTCATGAACGCCTATTTTactgccctctcttccctcgg
cCTTCGGAcggtccgtctcctcctccgcgccctgGGGTTGCCAGAGCACC
ATCTCGACGACACGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGCAC
TATTCGACACAGGCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGC
CCACACGGACTACGGTATGTTCACCTTCCTCATGACGGACCATACGCCCG
GCTTACAGGTCTGGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAG
GAGGTgccggcggtggaaggggcatTCATTGTGAACCTGGGAGACATGCT
CCAACGATGGACGAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGA
TCCAGGAGGcgacagaggaaggacggtACAGCGCCCCGTTTTTTTACGAG
CCCAATTTTGATACCTTGGTGGCCTGCTTGCCGGGCTTtgtcaaggaagg
cgaggtccCCCGCCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAA
AGTACCGACAGACCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCAC
ACCCTTGAAAATCACGCAGGCTAA

Synonyms

Publications