rna9918, rna9918 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9918
Unique Name	rna9918
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1859
Alignment location	KK037257.1:123371..125486 +

Link to JBrowse

Properties


Property Name	Value
Product	Isopenicillin N synthase
Orig transcript id	gnl\|cribi\|Naga_100423g3.2497.mrna
Orig protein id	gnl\|cribi\|Naga_100423g3.2497
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:123371..125486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100423g3	gene9624	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9918	rna9918-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20786.1	cds9887	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:123371..125486+
coding sequence from alignment at KK037257.1:123371..125486+

mRNA sequence

>rna9918 ID=rna9918|Name=rna9918|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp
GAGGAGGAGGAAGGGCTCGAGGGCAGGACGGAGGGGGGGGAAGAGGAAGA
GGTGGTGGACTGGCGCTATGAAGAGAAGCTCTTCGACGAGGAGCAGTACC
TGCGGGGTCTGCTGTGGAACGTTCAAATGTATGTGGATGGATATTGTCCC
GATTACCAATACGCATACCGCCACCGCTTCGCGCCCTCGGCGCAATGCTT
GGCCGACTTTATCCGGAATCAGACGAAGAACAACGCGTCCAGCTTTGCAC
TCTCGGTTCCGACCTCCCTCACGCCGCCACTCCACCCGGCCCTGGCCTGC
TTGGCAGTTATGCCTCGCTGGGGCCTTCATTTGGTCCCGGAGAACCTCTC
TTCCGTCCTGGAGAGCTCTGCCCGCGTGAACAAGATGTACGAGACAGGGG
CGGCCTTCTCCCTGAACCTATTGATGGACACTGTGAATAGCTCTCACCCT
CATCTTGTGCGCAGCCAAAATTTTCACTGGACAGAAATCAAAGCCAATAC
CCCTTGTGCCTCCCCTACCCCGTCGTCCTCCCCTCCTTCCTCCTCTTCGT
CGACCTCTCCCCCTCCCTCCCTCTCGTTGCACCTACCCCCTCTGTCGCGA
GCTCGCAAGGTAGCGGCCACGCAGAGCCCGCCCCTGAGAAGCTGGGTCCA
GTCTCCCTCCCTTCTTGTCTCTACCCCCATGCCCAAGAAATGGAAGGATA
CGTGGAAGAGGGAGGTGAAGGAAGAGGAACGATGGGGAGGGAAGAAGTCC
GAAGCCTCCAAAGCGGGCAGGGGACGGAAAGGGGAGGATGGAGGCGGTGG
ACAGGGAAAAGCAGGCAAGGCGAAGAGCTCGCCGACCTCAGGAGACATGG
GGAGCGAGGGAGGGAAGAAGGGCAGGTCGACCGCGGTCCCAAGAAGGAAT
GGCGCGGGGTTCCAACCCAGCAGGGGGAAGAGAAAGAAGTCCTCGGAAGC
ACCATGCCCTCCGTCGGTCCCTCCCTCCCTCCCTCCGACCCCTGTCAAAC
TTGGACAGCGGTCCACTCCATCGCCAGCGGCCTCCCTCTTAGACCGTGCA
CAGGTGCTGCCAGCTCGAGTTCCCGGTTCGAATCATCCTTCATCTCCCTC
CTCCGGAGCAAGCTTTTTTCCGAGCAAGCCAGACTTTTCCTCGCACGACC
TCGACGGGCCGGGCGAGTTTCCAATCCCGTCTTCCTCCCTCCCCCCCAAA
AAACGAGGGCGGCCCCGTTCCCCCCCCAAGGCACGAATGATGTGGGACGT
TGCAGCGGAACATACACTGCTGCGTGCGGCCTGTCGCCCGGGAAATTTTT
GCCTTCGTTTGTAGCCACCTTCTTCACCTGCCTGCCTCCTTTTGTATTCT
TCTTTCCAAATTTTGTGCCGGGGAGGTATACATAGGGGGATTCGGTCATG
TACAGTACCACTGACGTATGTCTTGTTTCAGAAGCAATCCATGGCTCTGC
ATCGAACTTTTTGGATCCCTGCCCTGAACTAAGTGACACATGTATACATG
GATGGGGGCGTCACTTTACAAAGAAATGAAAGAGATGTCCATTTGTGCCA
GTAGCATTTCAAGTAGCTTTGATCTCCTCGTGCCTGCCTGGTTTGGAAAG
AATTTATTGTTTTTGCAGTATCCTGGAAGTGACAAAGTGAAGATGAACAG
GATGGCTTTCGAGATCTTTGGCTGCTCAACATGTCTGTAAGTGGAGTGCA
TTGTATGACCATCCCACGACTTTCATGTCAGTTTTTTTCCTACAGGATTT
ATGTCGTTCAATGCTTACAACGATCTGCAACGCTCCAATCAATAGAAAGA
TGTTTTAATATGTTCAATGTCCAGACAATTTCTAGAATGCACATGAACTT
AAATAGGCC

protein sequence of rna9918

>rna9918-protein ID=rna9918-protein|Name=rna9918|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MDLYHTMGFCCSIYFLKAVILPFYSRVFLRLPEYLFVQHRSGSYLYPRYF
SGCVPASCVTRSYRPLFFRFITSREISTYQLRFRLTVFPFSSFVSGQAFF
SLPLDEKEKVSVRHNKINRGYTAFEEETLDPTRQTRGDTKEGFYLGREVA
MESEEARSFPLHGPNVWPDPVKLPRWRPVMNAYFTALSSLGLRTVRLLLR
ALGLPEHHLDDTFTRPMAALRLLHYSTQASNPSEGVYAAGAHTDYGMFTF
LMTDHTPGLQVWRGGAGQEDGSWQEVPAVEGAFIVNLGDMLQRWTNDVFK
STAHRVVIQEATEEGRYSAPFFYEPNFDTLVACLPGFVKEGEVPRHVPIK
SGEYLLGKYRQTHRDFVEKADDNHTLENHAG

mRNA from alignment at KK037257.1:123371..125486+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9918 ID=rna9918|Name=rna9918|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp|location=Sequence derived from alignment at KK037257.1:123371..125486+ (Nannochloropsis gaditana)
ATCCCCTAAGATGAATGAAAAGTGAGTAATTGCGGGATGTTCCGTGGTCC
CTGTGTAGGTTTCGCTCTTAATCTCCTTACCCCCCTTCGGGTTATTTTCA
TTTCACTCGTAACACTCACGGTCGATTTTACGTTAATCTTCATTTCCATT
CAATAGACATATTTTCATGTCATCCTCTGCAACTTCTACACCTCAAGTAT
TGTCGCTGCACGCTTTGAACCGCGCTGCATTGCCCATTGTCGACCTGGCT
GCGCCCGAGGAAGCCCCGCGCATCCTGTACGACGCCTGTCGGGACTTTGG
ATTTTTCTACCTGATCAACCATGGGGTACCTCAGGCCCTTATCGACGACA
TGCTTACAGAGTCCAAGGTGGATATTTTTCTCTCTGAATGCCATGTGTGA
AATGTTGGAGGGGGACACCTGAATTCTCCTTCGTTGTCCTGCCTCCGCGA
CATGCATTTATGCGATAAATTGGATGGACCTATACCATACAATGGGTTTT
TGTTGCTCAATTTACTTTTTAAAAGCGGTGATTCTCCCCTTTTATTCCCG
TGtctttcttcgtcttcctgaATATCTTTTTGTGCAACATCGATCCGGTA
GCTACCTGTACCCAAGGTATTTTTCCGGGTGCGTCCCGGCTTCCTGTGTT
ACGAGGAGCTATCGTCCTTTGTTCTTTAGGTTCATCACCTCGAGAGAGAT
TTCAACCTACCAACTACGATTCCGTCTCACCGTGTTTCCCTTTTCGTCAT
TCGTTTCCGGGCAGGCCTTTTTCAGCCTTCCCCTGGACGAAAAAGAGAAA
GTCTCCGTCCGGCACAACAAGATCAATCGGGGATACACCGCCTTCGAAGA
GGAGACTCTGGACCCAACTAGACAGACAAGGGGAGACACGAAGGAAGGTT
TCTacctggggagggaggtagccatggagagtgaggaggcgCGAAGCTTT
CCTTTGCACGGCCCAAACGTGTGGCCAGACCCCGTGAAGTTGCCGAGGTG
GAGACGTAAGTATAGGGCAGAGtcaaggagcgaggggcgTGTTCCTTGGG
ATGGGatggcgtggtggtggctATGGGcgtgaagggggggaggcaagaaT
GGGCTGTCGGATGGAAAAACGTCCGAGGTTTGCGGGGCTGGCCGTAGGCA
TCTTGGCCATCCTCTCTTGTCCTCTCAACccaatgcctcccttttttaAA
TGAGGCATCTAGCATTCCACCTCCCGATTGTCAACATttcatctcccccc
tcttttttctaGCCGTCATGAACGCCTATTTTactgccctctcttccctc
ggcCTTCGGAcggtccgtctcctcctccgcgccctgGGGTTGCCAGAGCA
CCATCTCGACGACACGTTCACCCGGCCGATGGCAGCGTTACGGCTCTTGC
ACTATTCGACACAGGTCAGAtgtctcccctctttcggGCATGCAGCTCAT
gttttgccctccccccctcccgtaCTACCTCCGTGCCCCCCCATGCCATC
CGTGGGCAGGTAGGATGGACCCTGGCTTCCTCTCATTCACCTTTCGTGGA
ATTAACACAGGCATCGAACCCGTCGGAAGGGGTGTATGCCGCCGGTGCCC
ACACGGACTACGGTATGTTCACCTTCCTCATGACGGACCATACGCCCGGC
TTACAGGTCTGGCGGGGTGGGGCCGGGCAGGAAGACGGGTCATGGCAGGA
GGTgccggcggtggaaggggcatTCATTGTGAACCTGGGAGACATGCTCC
AACGATGGACGAACGATGTGTTCAAGTCCACAGCGCACCGTGTGGTGATC
CAGGAGGcgacagaggaaggacggtACAGCGCCCCGTTTTTTTACGAGCC
CAATTTTGATACCTTGGTGGCCTGCTTGCCGGGCTTtgtcaaggaaggcg
aggtccCCCGCCACGTCCCTATCAAGAGTGGGGAGTACCTGTTGGGAAAG
TACCGACAGACCCACAGGGACTTTGTCGAAAAAGCGGACGACAACCACAC
CCTTGAAAATCACGCAGGCTAACGCACGCAAGAAAAATGATTTTAGAAAa
acagaaaggaaaaatatgTACAGGTCATGATTCCAAAAAGAAAGACTCCT
TCGTATGATTTCTTGC

Coding sequence (CDS) from alignment at KK037257.1:123371..125486+

>rna9918 ID=rna9918|Name=rna9918|organism=Nannochloropsis gaditana|type=CDS|length=3438bp|location=Sequence derived from alignment at KK037257.1:123371..125486+ (Nannochloropsis gaditana)
ATGGACCTATACCATACAATGGGTTTTTGTTGCTCAATTTACTTTTTAAA
AGCGGTGATTCTCCCCTTTTATTCCCGTGtctttcttcgtcttcctgaAT
ATCTTTTTGTGCAACATCGATCCGGTAGCTACCTGTACCCAAGGTATTTT
TCCGGGTGCGTCCCGGCTTCCTGTGTTACGAGGAGCTATCGTCCTTTGTT
CTTTAGGTTCATCACCTCGAGAGAGATTTCAACCTACCAACTACGATTCC
GTCTCACCGTGTTTCCCTTTTCGTCATTCGTTTCCGGGCAGGCCTTTTTC
AGCCTTCCCCTGGACGAAAAAGAGAAAGTCTCCGTCCGGCACAACAAGAT
CAATCGGGGATACACCGCCTTCGAAGAGGAGACTCTGGACCCAACTAGAC
AGACAAGGGGAGACACGAAGGAAGGTTTCTacctggggagggaggtagcc
atggagagtgaggaggcgCGAAGCTTTCCTTTGCACGGCCCAAACGTGTG
GCCAGACCCCGTGAAGTTGCCGAGGTGGAGACCCGTCATGAACGCCTATT
TTactgccctctcttccctcggcCTTCGGAcggtccgtctcctcctccgc
gccctgGGGTTGCCAGAGCACCATCTCGACGACACGTTCACCCGGCCGAT
GGCAGCGTTACGGCTCTTGCACTATTCGACACAGGCATCGAACCCGTCGG
AAGGGGTGTATGCCGCCGGTGCCCACACGGACTACGGTATGTTCACCTTC
CTCATGACGGACCATACGCCCGGCTTACAGGTCTGGCGGGGTGGGGCCGG
GCAGGAAGACGGGTCATGGCAGGAGGTgccggcggtggaaggggcatTCA
TTGTGAACCTGGGAGACATGCTCCAACGATGGACGAACGATGTGTTCAAG
TCCACAGCGCACCGTGTGGTGATCCAGGAGGcgacagaggaaggacggtA
CAGCGCCCCGTTTTTTTACGAGCCCAATTTTGATACCTTGGTGGCCTGCT
TGCCGGGCTTtgtcaaggaaggcgaggtccCCCGCCACGTCCCTATCAAG
AGTGGGGAGTACCTGTTGGGAAAGTACCGACAGACCCACAGGGACTTTGT
CGAAAAAGCGGACGACAACCACACCCTTGAAAATCACGCAGGCTAAATGG
ACCTATACCATACAATGGGTTTTTGTTGCTCAATTTACTTTTTAAAAGCG
GTGATTCTCCCCTTTTATTCCCGTGtctttcttcgtcttcctgaATATCT
TTTTGTGCAACATCGATCCGGTAGCTACCTGTACCCAAGGTATTTTTCCG
GGTGCGTCCCGGCTTCCTGTGTTACGAGGAGCTATCGTCCTTTGTTCTTT
AGGTTCATCACCTCGAGAGAGATTTCAACCTACCAACTACGATTCCGTCT
CACCGTGTTTCCCTTTTCGTCATTCGTTTCCGGGCAGGCCTTTTTCAGCC
TTCCCCTGGACGAAAAAGAGAAAGTCTCCGTCCGGCACAACAAGATCAAT
CGGGGATACACCGCCTTCGAAGAGGAGACTCTGGACCCAACTAGACAGAC
AAGGGGAGACACGAAGGAAGGTTTCTacctggggagggaggtagccatgg
agagtgaggaggcgCGAAGCTTTCCTTTGCACGGCCCAAACGTGTGGCCA
GACCCCGTGAAGTTGCCGAGGTGGAGACCCGTCATGAACGCCTATTTTac
tgccctctcttccctcggcCTTCGGAcggtccgtctcctcctccgcgccc
tgGGGTTGCCAGAGCACCATCTCGACGACACGTTCACCCGGCCGATGGCA
GCGTTACGGCTCTTGCACTATTCGACACAGGCATCGAACCCGTCGGAAGG
GGTGTATGCCGCCGGTGCCCACACGGACTACGGTATGTTCACCTTCCTCA
TGACGGACCATACGCCCGGCTTACAGGTCTGGCGGGGTGGGGCCGGGCAG
GAAGACGGGTCATGGCAGGAGGTgccggcggtggaaggggcatTCATTGT
GAACCTGGGAGACATGCTCCAACGATGGACGAACGATGTGTTCAAGTCCA
CAGCGCACCGTGTGGTGATCCAGGAGGcgacagaggaaggacggtACAGC
GCCCCGTTTTTTTACGAGCCCAATTTTGATACCTTGGTGGCCTGCTTGCC
GGGCTTtgtcaaggaaggcgaggtccCCCGCCACGTCCCTATCAAGAGTG
GGGAGTACCTGTTGGGAAAGTACCGACAGACCCACAGGGACTTTGTCGAA
AAAGCGGACGACAACCACACCCTTGAAAATCACGCAGGCTAAATGGACCT
ATACCATACAATGGGTTTTTGTTGCTCAATTTACTTTTTAAAAGCGGTGA
TTCTCCCCTTTTATTCCCGTGtctttcttcgtcttcctgaATATCTTTTT
GTGCAACATCGATCCGGTAGCTACCTGTACCCAAGGTATTTTTCCGGGTG
CGTCCCGGCTTCCTGTGTTACGAGGAGCTATCGTCCTTTGTTCTTTAGGT
TCATCACCTCGAGAGAGATTTCAACCTACCAACTACGATTCCGTCTCACC
GTGTTTCCCTTTTCGTCATTCGTTTCCGGGCAGGCCTTTTTCAGCCTTCC
CCTGGACGAAAAAGAGAAAGTCTCCGTCCGGCACAACAAGATCAATCGGG
GATACACCGCCTTCGAAGAGGAGACTCTGGACCCAACTAGACAGACAAGG
GGAGACACGAAGGAAGGTTTCTacctggggagggaggtagccatggagag
tgaggaggcgCGAAGCTTTCCTTTGCACGGCCCAAACGTGTGGCCAGACC
CCGTGAAGTTGCCGAGGTGGAGACCCGTCATGAACGCCTATTTTactgcc
ctctcttccctcggcCTTCGGAcggtccgtctcctcctccgcgccctgGG
GTTGCCAGAGCACCATCTCGACGACACGTTCACCCGGCCGATGGCAGCGT
TACGGCTCTTGCACTATTCGACACAGGCATCGAACCCGTCGGAAGGGGTG
TATGCCGCCGGTGCCCACACGGACTACGGTATGTTCACCTTCCTCATGAC
GGACCATACGCCCGGCTTACAGGTCTGGCGGGGTGGGGCCGGGCAGGAAG
ACGGGTCATGGCAGGAGGTgccggcggtggaaggggcatTCATTGTGAAC
CTGGGAGACATGCTCCAACGATGGACGAACGATGTGTTCAAGTCCACAGC
GCACCGTGTGGTGATCCAGGAGGcgacagaggaaggacggtACAGCGCCC
CGTTTTTTTACGAGCCCAATTTTGATACCTTGGTGGCCTGCTTGCCGGGC
TTtgtcaaggaaggcgaggtccCCCGCCACGTCCCTATCAAGAGTGGGGA
GTACCTGTTGGGAAAGTACCGACAGACCCACAGGGACTTTGTCGAAAAAG
CGGACGACAACCACACCCTTGAAAATCACGCAGGCTAA

Synonyms

Publications