rna9915, rna9915 (mRNA) Nannochloropsis gaditana

Overview
Namerna9915
Unique Namerna9915
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length810
Alignment locationKK037257.1:117791..118702 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101058g1.1127.mrna
Orig protein idgnl|cribi|Naga_101058g1.1127
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:117791..118702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101058g1gene9621Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9915rna9915-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20789.1cds9884Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9915 ID=rna9915|Name=rna9915|organism=Nannochloropsis gaditana|type=mRNA|length=810bp
TCCTATTCGTGCACCCCACTGTAGGCAGGCTCGGACGTGAAAGCAGTGAA
ACACGTTCTCGCGGTGTTTCAGGGATAGCACAGAGCACCCACGACGCAGG
CATTGGGGCACCGTACAGTCTATTAGGGCCTGTCAGGAAGGTGCATGCCT
TACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAGGGAAAA
GGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGGGCAGCA
ATAGGAGAGGGAGATCAGGGCGCCCACCGCTTCTCTCGCTTGTTCTCCTC
CTTCTGCTCTTTACCATATTGCCGTTTGTGGAAGGAGGCATCTATGGTTT
TTGGAAGTGGTTTCGAGGTAATGTTGAGGGGGAGGGAAGGGAAGGAGGAA
GGCGTGGAAGGAGAGGTCATCGGTACATCCTTTCCTCCTCAAAGCGCCCC
GTCGTGAACCTGATACATTGCTTGAGACATACTAAAATACTGCACATGCA
CGTTTGTCCGTGGCCCCTTTTTTATCCATCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTGGTCTTCCTGGTCCCAGGGCATTACAAGGAAGTCGTTTCC
AAAGTGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTCATTGATGT
CAATCAGGTAGATTAAATGGAGGGGAGGGGGGGCGGGGGGGAAGGAAGGG
GGGGAGGAAGGGGCATTAATTTTAAGGCCATAGTCGCTTCGAGCTCTCTC
GTCTCTCGACTTGTGTTTTTCGACAATATACACTCTGTTGTGTTTGGAAA
CTCCCATCAA
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protein sequence of rna9915

>rna9915-protein ID=rna9915-protein|Name=rna9915|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLV
LLLLLFTILPFVEGGIYGFWKWFRGHYKEVVSKVSSEQYAEFDHVLIDVN
QVD
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mRNA from alignment at KK037257.1:117791..118702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9915 ID=rna9915|Name=rna9915|organism=Nannochloropsis gaditana|type=mRNA|length=912bp|location=Sequence derived from alignment at KK037257.1:117791..118702+ (Nannochloropsis gaditana)
TCCTATTCGTGCACCCCACTGTAGGCAGGCTCGGACGTGAAAGCAGTGAA
ACACGTTCTCGCGGTGTTTCAGGGATAGCACAGAGCACCCACGACGCAGG
CATTGGGGCACCGTACAGTCTATTAGGGCCTGTCAGGAAGGTGCATGCCT
TACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAGGGAAAA
GGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGGGCAGCA
ATAGGAGAGGGAGATCAGGTGCGCTTTGTTAATGGCCCCAGACAGCTTTG
TCGTGTgacttcttcccctcccttggcttcccttcctgctaTTCTGATTT
CCTTCCTGCTGCCACCCCAGGGCGCCCACCGCTTCTCTCGCttgttctcc
tccttctgctcttTACCATATTGCCGTttgtggaaggaggcatcTATGGT
TTTTGGAAGTGGTTTCGAGGTAAtgttgagggggagggaagggaaggagg
aaggcgtggaaggagaggtcaTCGGtacatcctttcctcctcaaagCGCC
CCGTCGTGAACCTGATACATTGCTTGAGACATACTAAAATACTGCACATG
CACGTTTGTCCGTGGCCCCTTTTttatccatccctccctccctccctccc
tccctccctcctggtcTTCCTGGTCCCAGGGCATTACAAGGAAGTCGTTT
CCAAAGTGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTCATTGAT
GTCAATCAGGTAGATTaaatggaggggagggggggcgggggggaaggaag
ggggggaggaaggggcattAATTTTAAGGCCATAGTCGCTTCGAGCTCTC
TCGTCTCTCGACTTGTGTTTTTCGACAATATACACTCTGTTGTGTTTGGA
AACTCCCATCAA
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Coding sequence (CDS) from alignment at KK037257.1:117791..118702+

>rna9915 ID=rna9915|Name=rna9915|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at KK037257.1:117791..118702+ (Nannochloropsis gaditana)
ATGCCTTACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAG
GGAAAAGGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGG
GCAGCAATAGGAGAGGGAGATCAGGGCGCCCACCGCTTCTCTCGCttgtt
ctcctccttctgctcttTACCATATTGCCGTttgtggaaggaggcatcTA
TGGTTTTTGGAAGTGGTTTCGAGGGCATTACAAGGAAGTCGTTTCCAAAG
TGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTCATTGATGTCAAT
CAGGTAGATTaaATGCCTTACACTTCCATGCATCACAGGCACATTCGTGC
ATTAAGTTGCAGGGAAAAGGCGTGGGCTACGCCTGGTTCCGGCATGATAA
GGAGAGCGATGGGCAGCAATAGGAGAGGGAGATCAGGGCGCCCACCGCTT
CTCTCGCttgttctcctccttctgctcttTACCATATTGCCGTttgtgga
aggaggcatcTATGGTTTTTGGAAGTGGTTTCGAGGGCATTACAAGGAAG
TCGTTTCCAAAGTGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTC
ATTGATGTCAATCAGGTAGATTaaATGCCTTACACTTCCATGCATCACAG
GCACATTCGTGCATTAAGTTGCAGGGAAAAGGCGTGGGCTACGCCTGGTT
CCGGCATGATAAGGAGAGCGATGGGCAGCAATAGGAGAGGGAGATCAGGG
CGCCCACCGCTTCTCTCGCttgttctcctccttctgctcttTACCATATT
GCCGTttgtggaaggaggcatcTATGGTTTTTGGAAGTGGTTTCGAGGGC
ATTACAAGGAAGTCGTTTCCAAAGTGAGCAGCGAGCAGTACGCGGAGTTC
GACCACGTCCTCATTGATGTCAATCAGGTAGATTaa
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Synonyms
Publications