rna9913, rna9913 (mRNA) Nannochloropsis gaditana

Overview
Namerna9913
Unique Namerna9913
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length348
Alignment locationKK037257.1:116067..118194 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101058g2.1129.mrna
Orig protein idgnl|cribi|Naga_101058g2.1129
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:116067..118194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101058g2gene9620Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20791.1cds9882Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9913rna9913-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9913 ID=rna9913|Name=rna9913|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
AGGTGATGGACGGCGACTTGGACGGCTTCGTGTCTCGCATTTGCTCCGAG
CTTAGCAATTCCCGCAATCCAAGCATCAAGGTCATCGTATCTCCCCTCGC
CCTGCTCCTACGAACGGAGAAGTCACGCCTGGTCTTTGGTGCCCATGGCG
GCGTTGGATTCCTTACCAAGCTGCTCAAACTCCAGGTGCCCTCCCTCCCA
CCCTCCCTTCCTCTCTCCCTCCCCACCTCCTGTTCCTGAATGCGTCGACT
CTGCCTTTTCTGTCCTGTAATCGTGTCTCTTCATCGACCCCGCTCCTTAC
TCTACCATTTCTCATCCACACTCTTCCGCCGCTTCCTCCCTTCCTCCC
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protein sequence of rna9913

>rna9913-protein ID=rna9913-protein|Name=rna9913|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MGMIKLLFNIFSCSYPVPRSQSVQAAARPPSLLSSSPPSLPASSPPSLKL
DGKASARIITAALRREGQGRGEITPKEGGQEEGGKQGGREGGKEGGNGRE
QAGRAPKKRRRG
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mRNA from alignment at KK037257.1:116067..118194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9913 ID=rna9913|Name=rna9913|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp|location=Sequence derived from alignment at KK037257.1:116067..118194- (Nannochloropsis gaditana)
AGGAGGAGAACAAGCGAGAGAAGCGGTGGGCGCCCTGGGGTGGCAGCAGG
AAGGAAATCAGAATAGCAGGAAGGGAAGCCAAGGGAGGGGAAGAAGTCAC
ACGACAAAGCTGTCTGGGGCCATTAACAAAGCGCACCTGATCTCCCTCTC
CTATTGCTGCCCATCGCTCTCCTTATCATGCCGGAACCAGGCGTAGCCCA
CGCCTTTTCCCTGCAACTTAATGCACGAATGTGCCTGTGATGCATGGAAG
TGTAAGGCATGCACCTTCCTGACAGGCCCTAATAGACTGTACGGTGCCCC
AATGCCTGCGTCGTGGGTGCTCTGTGCTATCCCTGAAACACCGCGAGAAC
GTGTTTCACTGCTTTCACGTCCGAGCCTGCCTACAGTGGGGTGCACGAAT
AGGAATTTTAATGTGAAACAAGCGAAGGAAGTGCTCGCTCCCAGCGAGGA
GCGAGGGGGCTCTGGTAAAGTCCTGCAACTATAATCAAAGCCTGGGAGGG
AAAAACGCACATCTCAGCCTTCTTTTCATTCGATTGAACGCTCTTGCCTG
TCCGAAATCGTGAGGCTTGGCGCACACACGACTGCATTTAAATGTGGGTG
TACCGGGGAAAACCTTTGATTCATGCTTTTGGCATCTCTCTCGTTCCATG
CTGGCGCTTCCTGTCCTGACTTTCCTTCCACGTGAAGAGTTATTTTAGGT
GACGGGATGACTGTAGTCGGCACGCCACCCAGTAGTCAACGAGACAATGG
AGAAAACGGGTCGAATTGCAGCGCTCTTCACGCCATGGATAATTTTAATG
TCGCTTTGACGTCAATATCGGAGCAGCTCGAGCCGCTTTTTGCCTTGCCG
TGGGCGGTGGTGTTGGAGAGGTACGGGAGACGACATGCAAAGATAGACAC
ATGTTTAAAATGACACAAGTCGTCACAGTTAGCCTGGGTTGCGCGTGAGG
GAGATTGCCAGGGCTCGCAATCCCCTTCACAATTCGTGGTACCTTGCCCA
CCTCCTGGATACTGTGGGAGAATGCGTGTCGTGCCCCTTTCTTGCGCAAT
CTAAAGCCTTCGTGGTGCACCTTACTATCTTATATGACATATCCCCTCGT
AATCCACCGTTTTTTTGCCACGCATCTAGCCTGAAAGAGGAGGAGCGCGC
GAAACTCTGTCTGGCCATGGCTTACGCTGTTCATTCGTTGTACTACATGC
TCCTACGTACCCGGGTAAGCAGACGCGACGTGCGGCAGAGAAAGAAAGGA
CGCGACGCGAAGGCAGAGAAAGAAAGGACGGCAGAGAAGGAGGCAGAGAA
AGAAAGGACGCGACGCGAAGGCAGAGAGAGGAAGGACGCGACGTGAGACA
TGTCCGTGCAATCACCCACCTCCCCATCTGCTCTGCATGCGTGGCACACC
AAACAGGGGCAACCGACCAAAACCCATCGCGTACGGGTGGAGCTGGAGAG
GGTAAAGACGTACATGTCTCGGCTGCAAGTGAGTGGGGGCGAGTCAAAGA
GACATAAAGATGGGGATGATCAAGTTGCTCTTTAACATCTTCTCTTGCTC
ATACCCCGTTCCTCGCTCCCAATCCGTCCAGGCGGCAGCTCGCCCTCCTT
CCCTCCTTTCCTCCTCCCCTCCCTCCCTCCCTGCCTCTTCCCCTCCCTCC
CTCAAACTGGACGGCAAAGCCTCTGCCCGTATCATAACTGCAGCCTTACG
CCGAGAAGGGCAAGGTCGGGGGGAGATCACGCCGAAGGAAGGTGGCCAGG
AGGAGGGCGGGAAGCAGGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAAT
GGTAGGGAACAAGCAGGACGGGCTCCCAAAAAGCGACGGCGAGGGTAAGG
ATAGAACAATGCAACAAGAAAGAAAAGGGGTGGCGAAGAGGAAAAAAAGC
CTCCTGTCGATCTGTCAAGGATGAATACGGGCGGAGAGGGAGGAGAGAGG
CCTGTGGCCCTTGTCGAAATCGAGGCGGTTGCTGGCCCGGGTCAAGCACA
GCTTGGGGGAGGAAGGGGAGGGAGGGAGGGCGGGAGGGCGTGATGTACAA
AGATGATACCCCGTGGGGGAGAGGAGAGCGGATGCTCGTGCACATAGTAT
GAGAAAGAAATCAGACCTTGCCAATAAG
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Coding sequence (CDS) from alignment at KK037257.1:116067..118194-

>rna9913 ID=rna9913|Name=rna9913|organism=Nannochloropsis gaditana|type=CDS|length=339bp|location=Sequence derived from alignment at KK037257.1:116067..118194- (Nannochloropsis gaditana)
ATGGGGATGATCAAGTTGCTCTTTAACATCTTCTCTTGCTCATACCCCGT
TCCTCGCTCCCAATCCGTCCAGGCGGCAGCTCGCCCTCCTTCCCTCCTTT
CCTCCTCCCCTCCCTCCCTCCCTGCCTCTTCCCCTCCCTCCCTCAAACTG
GACGGCAAAGCCTCTGCCCGTATCATAACTGCAGCCTTACGCCGAGAAGG
GCAAGGTCGGGGGGAGATCACGCCGAAGGAAGGTGGCCAGGAGGAGGGCG
GGAAGCAGGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAATGGTAGGGAA
CAAGCAGGACGGGCTCCCAAAAAGCGACGGCGAGGGTAA
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Synonyms
Publications