rna9895, rna9895 (mRNA) Nannochloropsis gaditana

Overview
Namerna9895
Unique Namerna9895
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1009
Alignment locationKK037257.1:74088..74700 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102036g1.10091.mrna
Orig protein idgnl|cribi|Naga_102036g1.10091
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:74088..74700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102036g1gene9603Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20809.1cds9864Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9895rna9895-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9895 ID=rna9895|Name=rna9895|organism=Nannochloropsis gaditana|type=mRNA|length=1009bp
ACGGCCCAATACAACCATTTTTACCACTCGGCGTTTTGGGGTCTGCATGC
GTTGACTTCTTTTTTTTCCATGGCACGGCAGAAGATGCGTGCACATACAT
CAAAAGGCGGTCCGTCGTCATGAAACACAACAAATTACTTATTGCCGCGT
TAACCTCCTGCCCCCTCTATCTAGGCAATTTTACGGGAGAGGGCCGTACC
AACAGCCTAATATGCCGCCGATACCATCGTCAGCCCCGTCACGTACCAAC
ACCTCCTCCTCTTTATCCATACCGGCCCCACTTTCCGGGCATGTTGGGCG
TGAAGGCCTTCTGGTTGATCTGCGCAACACGATCCTTCTCTTACATCCGG
GTGATCTCCCATTTCCAGTGATACAAAACATCTCCCTGTTACGTGCGGCA
TGGGGGAAACCAATAAACGCATGCAAAAACGAGGGCGAAAACGGAAATGC
TGGCGACGTCTTTTCTTCCTCACCCACCGTGCTCATTGTGCAGGGAGGAA
CAGTGACCGCCGACTGCGACGAAGGGCAGCTCTTTCAGCCACAAGTCCCT
TGCCCTGCCCTCAGTCGCTTCATCGATGCCGAAGCCAGTGTGTTCCACAC
CACCAACCTCGGCTACATCCTCGCCCGGCTCTTCGCTGCCATGTCCACCT
CCGCCCGCCCTCCCTCCCCTCCCTCCCGCCCTCTGTCCCTCCCTCCCCTC
CATCACCTCGTTATCGCCGGAGCGAAAGCGGATACGGCCTTGGAGAGCAC
CGTGCGAGATGCTGCAGATATGGGATACATAGTCACGTACGTCACAGACG
CAGTGAGTGGATCCTCCGCTCAACGGGAGACGAGGACGGCCTATGTAAGG
GAGGGCGGGAGGGAAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGGGGGAGGAAGGTATCGGCAGAGACATCAGGGAAGCCGTCATAAAACG
CGCGACAATGAGCTGGATGTTGGCCTTTACGCCTCACTTATCTTGTCATG
GACATTTTC
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protein sequence of rna9895

>rna9895-protein ID=rna9895-protein|Name=rna9895|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
PPALPPSLGCHPPPFLRLPSPLLAPDLPVPRPRGGERRKGKREEGREGGV
LVVCEPLPGALQRTWAGHARQFFTLDLIAWRVNQKEKEEAIEDGSLPPRP
LSA
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mRNA from alignment at KK037257.1:74088..74700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9895 ID=rna9895|Name=rna9895|organism=Nannochloropsis gaditana|type=mRNA|length=613bp|location=Sequence derived from alignment at KK037257.1:74088..74700- (Nannochloropsis gaditana)
CCTCCCGCCCTCCCTCCCTCCCTAGGTTGCCACCCGCCTCCTTTTCTCCG
CCTGCCCTCCCCTCTACTGGCACCTGACCTCCCTGTACCTCGCCCACGCG
GAGGAGAAAGGAGGAAGGGGAAGAGGGAGGAAGGGAGGGAGGGAGGGGTG
CTGGTGGTATGTGAGCCTCTACCTGGTGCTTTACAACGCACTTGGGCCGG
CCATGCACGTCAATTTTTTACCTTGGACTTAATCGCTTGGCGCGTAAATC
AAAAAGAAAAAGAAGAAGCGATCGAAGATGGGTCTCTACCCCCGAGGCCC
CTCTCTGCTTAGATCGCGTTTTGTTTTATCGTATCTTAGTTGAAAGGCCT
TGACCAAGGATGACACGATGTAGGTATCTATGCATATATATATATATATA
TATATATACATATACATATAATTTGGAATATATACTGATATAAAGATAGA
TAGATATAGATATAAACATACACAAAGCGATACATGAATCGAGAGAAAAT
AAGATACATGGATATGGATAGACAGATAGTAGAGAGACAGATGCCCGTGC
TGAAAGGGATTGCACCACGGGGTCCAAAAGGAGACATCGACCGCCTCGTT
CCAGAGGCACCGG
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Coding sequence (CDS) from alignment at KK037257.1:74088..74700-

>rna9895 ID=rna9895|Name=rna9895|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at KK037257.1:74088..74700- (Nannochloropsis gaditana)
CCTCCCGCCCTCCCTCCCTCCCTAGGTTGCCACCCGCCTCCTTTTCTCCG
CCTGCCCTCCCCTCTACTGGCACCTGACCTCCCTGTACCTCGCCCACGCG
GAGGAGAAAGGAGGAAGGGGAAGAGGGAGGAAGGGAGGGAGGGAGGGGTG
CTGGTGGTATGTGAGCCTCTACCTGGTGCTTTACAACGCACTTGGGCCGG
CCATGCACGTCAATTTTTTACCTTGGACTTAATCGCTTGGCGCGTAAATC
AAAAAGAAAAAGAAGAAGCGATCGAAGATGGGTCTCTACCCCCGAGGCCC
CTCTCTGCTTAG
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Synonyms
Publications