rna9893, rna9893 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9893
Unique Name	rna9893
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	659
Alignment location	KK037257.1:70883..71897 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101471g2.7264.mrna
Orig protein id	gnl\|cribi\|Naga_101471g2.7264
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:70883..71897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101471g2	gene9601	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9893	rna9893-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20810.1	cds9862	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:70883..71897+
coding sequence from alignment at KK037257.1:70883..71897+

mRNA sequence

>rna9893 ID=rna9893|Name=rna9893|organism=Nannochloropsis gaditana|type=mRNA|length=659bp
GACAAGCACTTCTCCGACTAATACATCACCTGTCAAATCTCCTACCATCA
ACGTATCATTGATACGCATTTTACCCATTTTCCTACATATAGGAAGTGAT
TGCGATGTACGACGATGCCGAGATGCAGGTGGCCCCTCCCGATGAGACCG
AAGACACGTTTCCCACTTCACGCTCCTCCCTCCTCGCCGCAGAGGGGCAG
TACCTCCTCTCATCCTTGTATGCCACCTATCGTGCTCTCTTCCGCCACCT
ACCCGTCTCCGTCCGCCCTGCCGGCATCGACTACCTCGAGCGCGTCGAGG
GCGTTTCCTCTCCGTCCCTGCCCCTTTCACGGTCGGGGCACCGGGAGCGC
TGCCCCGCCCTCCCTTCCCTTTCCATCCTGCGATGGGCATCCCGGCGCTT
GCGAAGAAGCATCCGCAGGTGTTTGGCCCACGTCGATGACGTCATCGACC
GGGAGGCACGGGGAGATGCCGTGGCAGCGTTAACCGCGCAGGTGATGAGT
GTGGCGGCGATGTGGGGAGGGAGACATGATCTCTCTCCTTCCTTTCCTAT
CCCCCTCCCTCCTCTCCTTTCGATCCTCCCTCCTTTCCTTCCTCCCTTCC
CCCCCTCTTCTCTTTCTTCCTTAAGCCCAGCCTTGTTGGCAAGTGGCGAA
GGGAAGTAA

protein sequence of rna9893

>rna9893-protein ID=rna9893-protein|Name=rna9893|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
VQRLFDLDGRLGGGAGAPALRPALPPDLLLGGNGSDHTGGGGGGGDRGQR
AGRWRGRAGWRAGRRAGGKRLPSRVPTGEGPMPGALRALRLSFDLGLPHQ
HLDVTGKWRDRCPGASLATALVHPPPPGRGGSQTSLAAVASNLPRAPADD
NAGPREQSGAGGARSSPLSCTGGGPHDLYCRSPSDSSAGGILGVGREGRL
EADAAAGLGGGAGSGLCPGAEGSGGLGGEEGAGRRGRRKGRREGGTEGGA
EGVGDGVVEGPAHILTCGRGTRKGAFPTKYLPCARVCKRNSLAR

mRNA from alignment at KK037257.1:70883..71897+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9893 ID=rna9893|Name=rna9893|organism=Nannochloropsis gaditana|type=mRNA|length=1015bp|location=Sequence derived from alignment at KK037257.1:70883..71897+ (Nannochloropsis gaditana)
GTGCAGCGACTTTTTGACCTTGATGGCCGGCTtggcggaggtgctggagc
acccgccctccgccccgccctcccgcccgaccttctccttgggggaaatg
gaagcgATCACacgggcggtggtggaggcggtggcgacCGAGGTCAGCGA
GCAGGCaggtggcgagggagagcgggatggagggcgggacggagggcggg
ggggaagcgcctTCCCAGCCGCGTCCCAACTGGTGAGGGTCCAATGCCCG
GAGCTCTCCGTGCTCTACGCCTGTCGTTTGACCTTGGCCTCCCTCATCAA
CACCTCGACGTCACGGGAAAATGGCGGGACCGATGCCCTGGCGCGAGCCT
TGCGACCGCTCttgtccaccctcccccccctgggcGGGGTGGCTCCCAAA
CGTCTCTGGCCGCCGTTGCTTCGAACCTGCCTCGCGCTCCTGCAGACGAT
AATGCGGGACCAAGAGAGCAATCCGGGGCCGGAGgtgcccgctcctcccc
tctctcctgcacAGGCGGCGGCCCTCATGACCTGTATTGCCGAAGTCCAA
GTGACTCATCGGCGGGAGGAATTCttggggtgggaagggaaggaaggctg
GAAGCAGACGCAGCGGCAGGTCTTGGCGGTGGCGCTGGCTCGGGCCTTTG
TCCAGGAGCGGAAGGAAGTGGTggcctgggaggagaggaaggggcaggga
ggagggggaggaggaaagggaggagggagggagggacagagggcggggcg
gagggagtcgGCGATGGAGTTGTTGAAGGGCCCGCCCATATTTTAACgtg
tgggagaggaacgCGGAAAGGCGCCTTCCCAACGAAATATCTTCCATGTG
CACGAGTGTGCAAGAGGAATAGCCTGGCAAGGTAGCGGGCTGTCACGCAT
GGAGCCACGTGGCAGGCGGGTCGAGACACCATTCCACGTTCCCGCCTGCC
GCGCGCATCAATGCGTTGTTAATATCAAGCAATGGGACGGCGTCTTGTGT
CGACCAGGGGTTGGA

Coding sequence (CDS) from alignment at KK037257.1:70883..71897+

>rna9893 ID=rna9893|Name=rna9893|organism=Nannochloropsis gaditana|type=CDS|length=885bp|location=Sequence derived from alignment at KK037257.1:70883..71897+ (Nannochloropsis gaditana)
GTGCAGCGACTTTTTGACCTTGATGGCCGGCTtggcggaggtgctggagc
acccgccctccgccccgccctcccgcccgaccttctccttgggggaaatg
gaagcgATCACacgggcggtggtggaggcggtggcgacCGAGGTCAGCGA
GCAGGCaggtggcgagggagagcgggatggagggcgggacggagggcggg
ggggaagcgcctTCCCAGCCGCGTCCCAACTGGTGAGGGTCCAATGCCCG
GAGCTCTCCGTGCTCTACGCCTGTCGTTTGACCTTGGCCTCCCTCATCAA
CACCTCGACGTCACGGGAAAATGGCGGGACCGATGCCCTGGCGCGAGCCT
TGCGACCGCTCttgtccaccctcccccccctgggcGGGGTGGCTCCCAAA
CGTCTCTGGCCGCCGTTGCTTCGAACCTGCCTCGCGCTCCTGCAGACGAT
AATGCGGGACCAAGAGAGCAATCCGGGGCCGGAGgtgcccgctcctcccc
tctctcctgcacAGGCGGCGGCCCTCATGACCTGTATTGCCGAAGTCCAA
GTGACTCATCGGCGGGAGGAATTCttggggtgggaagggaaggaaggctg
GAAGCAGACGCAGCGGCAGGTCTTGGCGGTGGCGCTGGCTCGGGCCTTTG
TCCAGGAGCGGAAGGAAGTGGTggcctgggaggagaggaaggggcaggga
ggagggggaggaggaaagggaggagggagggagggacagagggcggggcg
gagggagtcgGCGATGGAGTTGTTGAAGGGCCCGCCCATATTTTAACgtg
tgggagaggaacgCGGAAAGGCGCCTTCCCAACGAAATATCTTCCATGTG
CACGAGTGTGCAAGAGGAATAGCCTGGCAAGGTAG

Synonyms

Publications