rna9887, rna9887 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9887
Unique Name	rna9887
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1919
Alignment location	KK037257.1:56813..58884 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100519g1.3618.mrna
Orig protein id	gnl\|cribi\|Naga_100519g1.3618
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:56813..58884 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100519g1	gene9595	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20819.1	cds9856	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9887	rna9887-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:56813..58884-
coding sequence from alignment at KK037257.1:56813..58884-

mRNA sequence

>rna9887 ID=rna9887|Name=rna9887|organism=Nannochloropsis gaditana|type=mRNA|length=1919bp
CCCTTCTCCCTGTCGTCCTCGAAGTGGACGGCCCCTCCATTTCCGCCTGA
ACGACATCCAATGCCCCATGGCGACACTGCCTTCAAACGCCGCCTCGTCC
GCGCGCAGACCCATTCCTACGCTGGTTTGGTTCCCATCCCGTGGTTCGAC
TGGCGCCAAGCGACCTCCCTCCTGAAGAAAGGGAGGACCGGGCAGGGCGC
GTCCGAGAGGATGCGGGACGTAGAGGGCTACCTGCGCAAGGCGTTCAGGT
GGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGTGGGGGAGGAGGGAG
GGGGAGGGCGTGCGTCCTTCAGGAAACGAGAGGGGAATGTCAGGTCTGGA
CAAGGGAAAAAGGGGTTGGTGAATGGGGGGAGGGTCCAAGGGTGAGGAGG
AAGGGGAGAAGGAGGAGGGCACGCGCGAGGAGGCAGGGAGGAGACGATGG
GGGGAAGGGAGTCAGGAGGATACATATATTTACAGCCCCAATCCTCCCCA
TTATATATATGTACATCTTGGTATGTATATATCCATACATATTCATTCTT
CCAGAAAATAGGAAATCGTGCCATACTTGCATGATTGTAGGATAGATGAG
GGGCGAAGGTCAGCTGTAGGAGAGGAATCTGTGAGAGTTAAGGTTACAGT
TAGGGCCAATAAGAGCATTGGCGGACTACTGCCCAAACGAGAGAGGAGGG
ACGTGAACGTCTCCACCTCCCAAGCCTCACACAGGCCCACTTCCAACCCT
TTATCTGCCTCCCTCCCTTTTCCTTCATCCTCCCTCCCTTTTCCTTCATT
CTCCCTCCCTTTTCCTTCATCCTCCCTCCCTTCTCCTTCATCCTCCCTCC
CTTTTCCTTCATCCTCCCTGACGCAGGGCGGAGGGTCTCTCCATGGAGGA
CTACCTCCCTTCTCACGCCAACCGCTCCGTGCCTGCCCCGCCCCCTCCCT
CCTTCCCTCCCTCTTCCTCCCCTCCTCTCCCGGCGCCCAGAGCCAGGACC
CGCCAGACGCCGGCTACTAAAAAAAGTCTCCCCGTCTACCCCTGCCTCAT
CGATACCCCTCCCTCCTTCCCTCCCTGCTATCAATAACCGCCACTCTCTG
AGAAAAGTGACTTCCGCGACGGTTGTCTCGGAGATGGAAGCTCCGAAAAA
GAGGCGTGGACGCCCAGCAAAGAGGAAAATGGACACAAAGGAGGAAGAAA
GCAGAGAGAGTGGGGGAAGGGGGGGGCGGATGGCCGGGGGAGGGGCAGGA
GGGACGAAGGAAAGGAAGACGCAGCCGGAAAAAGGAGGAAGATGGAAAGG
AATTCCAGGATCAGACCGACTTGTCACCGGCCGAAGCGACGGAAGTGGCA
GAGGGCTCTCCCAAAGAGAAAAGTGGACGTGCTCGGAGTGGAGCCACCGC
TCCAGTGGAATCGAGGAGAAAGAAATCGAAAGTGCCTCAAGCAATCGCAG
AGTCGTCGATGGACGGGAGTACACGGAACGAGAAGTTTGTTTCGCGGTCA
GGATTGACTAATGAGAATATGTAGACCGACGGGGAATACATGCCAAGAGA
GAGAAACGCCCCTGAATGTGGGCGGAAGAAGGGAGGTCGCAGACGAGAAA
CAAATCATAGAACCACAGTGAAATTAGGTCATGACTAGACTTGAGAATAT
TAGCGGCTAATTCATATGGGCTCAACGGGTTTCGATTGATCTGAAAGATT
ATAATGAAGCTCTCTTTGGTGACGATATCGCACCTTTACCTTCGATGCAA
AGGGCAGGTAGGACTAGGTGTAATGGTCATACTCCGTCATCGAAAAAGTA
CACGTGCGCATGTATATATAGTGGAAAAGAATGACCCTGGTTGACCGAGT
GAAATGGCTTTACTCAATTTGTGTTGTCCTTCTCATTTGAAAACGCTTTA
AAGTTAACCTCCCCTGTCC

protein sequence of rna9887

>rna9887-protein ID=rna9887-protein|Name=rna9887|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MEAPKKRRGRPAKRKMDTKEEESRESGGRGGRMAGGGAGGTKERKTQPEK
GGRWKGIPGSDRLVTGRSDGSGRGLSQREKWTCSEWSHRSSGIEEKEIES
ASSNRRVVDGREYTEREVCFAVRID

mRNA from alignment at KK037257.1:56813..58884-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9887 ID=rna9887|Name=rna9887|organism=Nannochloropsis gaditana|type=mRNA|length=2072bp|location=Sequence derived from alignment at KK037257.1:56813..58884- (Nannochloropsis gaditana)
CGGCCCCTCCATTTCCGCCTGAACGACATCCAATGCCCCATGGCGACACT
GCCTTCAAACGCCGCCTCGTCCGCGCGCAGGTCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCATGACTG
CTGGAAAAGATGTGAACGATCGAGGGAGTTGCCATCTGCAGTCATGCCTC
TCCGAAGTCTTTCCTTTCCTCCTTCCCTCTCTCTCTCTTCCTCCCGCCCG
CCCTCCCCCAGACCCATTCCTACGCTGGTTTGGTTCCCATCCCGTGGTTC
GACTGGCGCCAAGCGACCTCCCTCCTGAAGAAAGGGAGGACCGGGCAGGG
CGCGTCCGAGAGGATGCGGGACGTAGAGGGCTACCTGCGCAAGGCGTTCA
GGTGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGTGGGGGAGGAGG
GAGGGGGAGGGCGTGCGTCCTTCAGGAAACGAGAGGGGAATGTCAGGTCT
GGACAAGGGAAAAAGGGGTTGGTGAATGGGGGGAGGGTCCAAGGGTGAGG
AGGAAGGGGAGAAGGAGGAGGGCACGCGCGAGGAGGCAGGGAGGAGACGA
TGGGGGGAAGGGAGTCAGGAGGATACATATATTTACAGCCCCAATCCTCC
CCATTATATATATGTACATCTTGGTATGTATATATCCATACATATTCATT
CTTCCAGAAAATAGGAAATCGTGCCATACTTGCATGATTGTAGGATAGAT
GAGGGGCGAAGGTCAGCTGTAGGAGAGGAATCTGTGAGAGTTAAGGTTAC
AGTTAGGGCCAATAAGAGCATTGGCGGACTACTGCCCAAACGAGAGAGGA
GGGACGTGAACGTCTCCACCTCCCAAGCCTCACACAGGCCCACTTCCAAC
CCTTTATCTGCCTCCCTCCCTTTTCCTTCATCCTCCCTCCCTTTTCCTTC
ATTCTCCCTCCCTTTTCCTTCATCCTCCCTCCCTTCTCCTTCATCCTCCC
TCCCTTTTCCTTCATCCTCCCTGACGCAGGGCGGAGGGTCTCTCCATGGA
GGACTACCTCCCTTCTCACGCCAACCGCTCCGTGCCTGCCCCGCCCCCTC
CCTCCTTCCCTCCCTCTTCCTCCCCTCCTCTCCCGGCGCCCAGAGCCAGG
ACCCGCCAGACGCCGGCTACTAAAAAAAGTCTCCCCGTCTACCCCTGCCT
CATCGATACCCCTCCCTCCTTCCCTCCCTGCTATCAATAACCGCCACTCT
CTGAGAAAAGTGACTTCCGCGACGGTTGTCTCGGAGATGGAAGCTCCGAA
AAAGAGGCGTGGACGCCCAGCAAAGAGGAAAATGGACACAAAGGAGGAAG
AAAGCAGAGAGAGTGGGGGAAGGGGGGGGCGGATGGCCGGGGGAGGGGCA
GGAGGGACGAAGGAAAGGAAGACGCAGCCGGAAAAAGGAGGAAGATGGAA
AGGAATTCCAGGATCAGACCGACTTGTCACCGGCCGAAGCGACGGAAGTG
GCAGAGGGCTCTCCCAAAGAGAAAAGTGGACGTGCTCGGAGTGGAGCCAC
CGCTCCAGTGGAATCGAGGAGAAAGAAATCGAAAGTGCCTCAAGCAATCG
CAGAGTCGTCGATGGACGGGAGTACACGGAACGAGAAGTTTGTTTCGCGG
TCAGGATTGACTAATGAGAATATGTAGACCGACGGGGAATACATGCCAAG
AGAGAGAAACGCCCCTGAATGTGGGCGGAAGAAGGGAGGTCGCAGACGAG
AAACAAATCATAGAACCACAGTGAAATTAGGTCATGACTAGACTTGAGAA
TATTAGCGGCTAATTCATATGGGCTCAACGGGTTTCGATTGATCTGAAAG
ATTATAATGAAGCTCTCTTTGGTGACGATATCGCACCTTTACCTTCGATG
CAAAGGGCAGGTAGGACTAGGTGTAATGGTCATACTCCGTCATCGAAAAA
GTACACGTGCGCATGTATATATAGTGGAAAAGAATGACCCTGGTTGACCG
AGTGAAATGGCTTTACTCAATTTGTGTTGTCCTTCTCATTTGAAAACGCT
TTAAAGTTAACCTCCCCTGTCC

Coding sequence (CDS) from alignment at KK037257.1:56813..58884-

>rna9887 ID=rna9887|Name=rna9887|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at KK037257.1:56813..58884- (Nannochloropsis gaditana)
ATGGAAGCTCCGAAAAAGAGGCGTGGACGCCCAGCAAAGAGGAAAATGGA
CACAAAGGAGGAAGAAAGCAGAGAGAGTGGGGGAAGGGGGGGGCGGATGG
CCGGGGGAGGGGCAGGAGGGACGAAGGAAAGGAAGACGCAGCCGGAAAAA
GGAGGAAGATGGAAAGGAATTCCAGGATCAGACCGACTTGTCACCGGCCG
AAGCGACGGAAGTGGCAGAGGGCTCTCCCAAAGAGAAAAGTGGACGTGCT
CGGAGTGGAGCCACCGCTCCAGTGGAATCGAGGAGAAAGAAATCGAAAGT
GCCTCAAGCAATCGCAGAGTCGTCGATGGACGGGAGTACACGGAACGAGA
AGTTTGTTTCGCGGTCAGGATTGACTAA

Synonyms

Publications