rna9883, rna9883 (mRNA) Nannochloropsis gaditana

Overview
Namerna9883
Unique Namerna9883
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length572
Alignment locationKK037257.1:49855..50634 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100519g5.3616.mrna
Orig protein idgnl|cribi|Naga_100519g5.3616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:49855..50634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100519g5gene9592Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9883rna9883-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20817.1cds9852Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9883 ID=rna9883|Name=rna9883|organism=Nannochloropsis gaditana|type=mRNA|length=572bp
GTTACATCAACCTCCTCCTTCCAAGGACTGGACGTTGTCGAGACTGAAGA
CAGCCACAGACCCGTCCTGTAATTCGAATAGCATTATGGCCGCACCCACG
CCCACTGCCATCGCCACCCATATCGAGGAGACACATGTGATTCCTAGCGC
TATTACTGAAGTCTGGCCAGTCATCAAAGGAATGAAGATGGAGACGTGGT
GGAATCTGGTAGACAAGGCCACCCCTGATTCCCCTGGCACCGGCTTGGCC
TTGGGCAGCACCTACACGCTGCACTTCAAGGACGGCACCAAGTGGGGCAT
TGTCATCGTGGAGGCCAGCGAGCTCCACAAGTGAGGGAGGGAAAGGGACA
GGAAGGGGGAAAGCCTGCATTTCGAGAACCGGGTCACTGGTGACGCGTCT
CCTTGTCTTCTTCCTTTCTCTATGTTTGCGCCAGAAATCTCATTTCGTCT
TTTTCTCGCGCGCCCTCTCACATCCCCTCTTCCTTCACGTACAGATTTGT
GTCCTTCGAGATTATCAGCAGCAACCCCAGCATCTCCGTCTCCTCCGCCT
TGCACACGGTCACTTGCAAAGT
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protein sequence of rna9883

>rna9883-protein ID=rna9883-protein|Name=rna9883|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
LRPTLPQPVTATDHTFVSWSTDFSNDASADAVLDSRFKKRTAACLPFGHL
PLSFSPPWTVSFTYRVTSIVVSSAFFSDFPCPFPVVSSLSLIKYKRVKPI
PNFPLPTLFPALPPFLLRSSRRRGLARAPRSFRAKVRRETRSIDMIENSR
GTVQRTRAGMRERR
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mRNA from alignment at KK037257.1:49855..50634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9883 ID=rna9883|Name=rna9883|organism=Nannochloropsis gaditana|type=mRNA|length=780bp|location=Sequence derived from alignment at KK037257.1:49855..50634+ (Nannochloropsis gaditana)
CTCcggcccaccctccctcagccTGTGACCGCCACGGACCACACCTTCGT
GTCTTGGTCCACCGACTTCAGCAACGACGCGTCCGCTGACGCCGTCCTCG
ACTCGCGCTTCAAAAAACGTACTGCTGCTTGCCTACCCTTTGGCCACcta
cctctttctttctcaccCCCATGGACTGTCTCGTTCACCTATCGGGTCAC
CTCCATCGTTGTGTCGTCCGCTTTTTTCTCTGATTTCCCCTGTCCATTTC
CCGTCGTCTCGTCTCTTTCCCTAATCAAGTACAAGCGCGTCAAACCGATT
CCAaactttcctcttcccaccctctttcccgccctccctcccttcctcct
ccgttctTCTCGCAGGCGAGGGCTTGCAAGGGCTCCACGATCTTTTCGCG
CGAAAGTGAGAAGGGAGACGAGATCGATAGACATGATAGAAAATAGTAGA
GGGACGGTGCAGAGGACACGGGCGGGAATGCGAGAAAGAAGGTAGAAAGa
ggcggaaaaggagggtggggggagggagatgaggtGGGGGACAGGACAAG
CTGGGTGAGAAAATGGAGCCACGGAGGCAGTGGTCGGAAAGAGTGGAATA
ATAGACGAAAGGAAGGTGAGCGAATGCGAAGATAGGGCAAAttgagagga
agaaagccggAGGATAGCCTCACACTGTGGGCGGgcgcgaggggggaaag
ggggatggagggaggggtgccAGCTCTCCCAGGATGATGTCAAACACTCC
TGGAGAAAGAGGTTAGGATTTTCTCTTCGG
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Coding sequence (CDS) from alignment at KK037257.1:49855..50634+

>rna9883 ID=rna9883|Name=rna9883|organism=Nannochloropsis gaditana|type=CDS|length=495bp|location=Sequence derived from alignment at KK037257.1:49855..50634+ (Nannochloropsis gaditana)
CTCcggcccaccctccctcagccTGTGACCGCCACGGACCACACCTTCGT
GTCTTGGTCCACCGACTTCAGCAACGACGCGTCCGCTGACGCCGTCCTCG
ACTCGCGCTTCAAAAAACGTACTGCTGCTTGCCTACCCTTTGGCCACcta
cctctttctttctcaccCCCATGGACTGTCTCGTTCACCTATCGGGTCAC
CTCCATCGTTGTGTCGTCCGCTTTTTTCTCTGATTTCCCCTGTCCATTTC
CCGTCGTCTCGTCTCTTTCCCTAATCAAGTACAAGCGCGTCAAACCGATT
CCAaactttcctcttcccaccctctttcccgccctccctcccttcctcct
ccgttctTCTCGCAGGCGAGGGCTTGCAAGGGCTCCACGATCTTTTCGCG
CGAAAGTGAGAAGGGAGACGAGATCGATAGACATGATAGAAAATAGTAGA
GGGACGGTGCAGAGGACACGGGCGGGAATGCGAGAAAGAAGGTAG
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Synonyms
Publications