rna988, rna988 (mRNA) Nannochloropsis gaditana

Overview
Namerna988
Unique Namerna988
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1053
Alignment locationCM002456.1:908479..909002 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100114g3.2485.mrna
Orig protein idgnl|cribi|Naga_100114g3.2485
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:908479..909002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100114g3gene951Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna988rna988-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29700.1cds987Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna988 ID=rna988|Name=rna988|organism=Nannochloropsis gaditana|type=mRNA|length=1053bp
ATGTCCGTGCGGTCCCAAAAAGTAATTGGTTGGGAGGCTACCGTGGAACC
GCCGTGGAGACTTCATCTATTAGCTCCCACAAATATGTCCTCCAGGGCTG
CGTCGTCACTAGTACTATCCTTGCGGCTCCGTGGACCCTCTTCCCGTCTA
AGACTACTTCCAGTCCTCGGTCATGGTGTCCATTCCCTCGCGGGAAAGCC
GCAGCGGCTTCACCATTTTAAGGGGTTTCATCTGCAGACATCTTTTTTGC
CCAGTAACAGCCAGTACCTGCACGTGCCTCCACAAGCAGTCAAACCGGAG
GCGAGGTTGAAGGAAGATGGATCGTTCGCCAGCGAAGGATCAGACCCTTC
AAAGACGACCATCAAGCGGCCCCCCTCCTCAAGGGAGACTATGTGGACAG
TGCCTAACATAATTACCTTGGCACGCATTATCTCGTCTCCTTTACTCGCG
GGCTTGATTCTTCAAGGTCGATACTCGTATGCAGTGATGGGTCTCGCGGT
GGCCGCCGGCTCTGATTGGCTGGATGGGCATATCGCCAAGAATTATAACC
AGTCCTCTGTCTTGGGCAGCTTCCTGGATCCCTTGGCGGATAAAGTCCTG
GTGGCCGCACTCGCCGTGCCCCTGGCTTTACAAGGCTTCATACCCACCCC
ATTGCTCGTGGTAGTCCTGGGACGAGACGCCTTATTGATTGGCGGCTCGT
TTATCAAGCGCCTTCAGAATCGACCCGTGGGGGCTCCCTTTTTCGACACC
GCCTCTTCGGCAACATTTCAAATTACGCCGAACCTGCTGAGTAAAATCAA
TACGACATTGCAGTTTATCGTCCTCACTTTTGCGCTCTGTCGCGCTTTGT
GGGGCGACGCGATCCCGGCCGCGGTGGACGAGGTGTTCGAGCCGCTCTGC
TGGCTCACCGGTGGCACGACCGTCGGTTCGGGCTTGACGTATCTCGCGGG
GGACGGGACGGGCTCCTTGCTGCGGAAAAGGGGAAAGAAGGAGGGGGATG
CTCGGATGAAGGCGACGGCCGCCGGGAGAAAGATTGATGAGCAGCGAAGA
TGA
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protein sequence of rna988

>rna988-protein ID=rna988-protein|Name=rna988|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MWHRFHRFFLHSPGLLLPYPLGKQGAHHLLNPTVYVAGCGVTSLALCLGT
ICRHELQKGYPHAGKPISWMYTTKLPQRIARVNGCSPCSSATLFLGFCQR
MTQPVKRTNCPRELRRRWNRLKGNQSFRESRVMKLNFVTGMGMSVTYHSE
CRDLTSR
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mRNA from alignment at CM002456.1:908479..909002+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna988 ID=rna988|Name=rna988|organism=Nannochloropsis gaditana|type=mRNA|length=524bp|location=Sequence derived from alignment at CM002456.1:908479..909002+ (Nannochloropsis gaditana)
ATGTGGCACCGCTTCCACAGATTCTTTCTGCATTCTCCTGGACTCTTACT
GCCCTACCCACTTGGGAAGCAGGGGGCACACCATCTTTTAAATCCAACGG
TATACGTTGCTGGCTGCGGAGTCActtcccttgccctctgtcTCGGAACA
ATCTGCAGACACGAACTGCAGAAGGGCTACCCACACGCAGGAAAGCCTAT
AAGCTGGATGTACACAACTAAGCTACCCCAAAGAATAGCACGGGTCAACG
GCTGCAGTCCTTGCTCTTCAGCTACTCTATTTCTCGGGTTCTGTCAGCGC
ATGACCCAGCCTGTCGTGAGCATACATTATAAGTGGGCACGATAGGGCAA
ATTTTTACCTAAAAGAAAAGAACAAACTGCCCACGAGAATTGAGAAGACG
CTGGAATAGATTAAAAGGGAACCAGTCATTCAGGGAGAGTCGTGTAATGA
AATTAAATTTCGTGACAGGAATGGGGATGAGCGTGACTTACCACTCGGAG
TGTCGAGATTTGACATCGAGGTAG
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Coding sequence (CDS) from alignment at CM002456.1:908479..909002+

>rna988 ID=rna988|Name=rna988|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002456.1:908479..909002+ (Nannochloropsis gaditana)
ATGTGGCACCGCTTCCACAGATTCTTTCTGCATTCTCCTGGACTCTTACT
GCCCTACCCACTTGGGAAGCAGGGGGCACACCATCTTTTAAATCCAACGG
TATACGTTGCTGGCTGCGGAGTCActtcccttgccctctgtcTCGGAACA
ATCTGCAGACACGAACTGCAGAAGGGCTACCCACACGCAGGAAAGCCTAT
AAGCTGGATGTACACAACTAAGCTACCCCAAAGAATAGCACGGGTCAACG
GCTGCAGTCCTTGCTCTTCAGCTACTCTATTTCTCGGGTTCTGTCAGCGC
ATGACCCAGCCTGTCAAAAGAACAAACTGCCCACGAGAATTGAGAAGACG
CTGGAATAGATTAAAAGGGAACCAGTCATTCAGGGAGAGTCGTGTAATGA
AATTAAATTTCGTGACAGGAATGGGGATGAGCGTGACTTACCACTCGGAG
TGTCGAGATTTGACATCGAGGTAGATGTGGCACCGCTTCCACAGATTCTT
TCTGCATTCTCCTGGACTCTTACTGCCCTACCCACTTGGGAAGCAGGGGG
CACACCATCTTTTAAATCCAACGGTATACGTTGCTGGCTGCGGAGTCAct
tcccttgccctctgtcTCGGAACAATCTGCAGACACGAACTGCAGAAGGG
CTACCCACACGCAGGAAAGCCTATAAGCTGGATGTACACAACTAAGCTAC
CCCAAAGAATAGCACGGGTCAACGGCTGCAGTCCTTGCTCTTCAGCTACT
CTATTTCTCGGGTTCTGTCAGCGCATGACCCAGCCTGTCAAAAGAACAAA
CTGCCCACGAGAATTGAGAAGACGCTGGAATAGATTAAAAGGGAACCAGT
CATTCAGGGAGAGTCGTGTAATGAAATTAAATTTCGTGACAGGAATGGGG
ATGAGCGTGACTTACCACTCGGAGTGTCGAGATTTGACATCGAGGTAG
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Synonyms
Publications