|
|
Properties
| Property Name | Value |
| Product | Zn(2)-C6 fungal-type DNA-binding domain protein |
| Orig transcript id | gnl|cribi|Naga_100314g3.5183.mrna |
| Orig protein id | gnl|cribi|Naga_100314g3.5183 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| KK037257.1 | supercontig | KK037257.1:35316..38369 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9877 ID=rna9877|Name=rna9877|organism=Nannochloropsis gaditana|type=mRNA|length=2783bp GTTCTAGCTATGAGGCTGCTATTCCCGGGCTCACATATTGGGATTGCCGA CGGCATCGCCTTTTGCACACCGTCGTATGAAGGCATGGTGTATCCTTCTC ATTTCTTGCTTATGGGTGATGTGTGCGAGCTTGTAAAGTTCAATGGGCCT TGCTTACTCTTTAGGATCACTTTGCGTCAGGTGTGCAGACCTCCGAGTTG ATGGCTTTTCACGATAAAAACAATTACCGAGGGTGAAGCCATTTGTGCAA TCTTTCTTCTGAAAGCCATCAGCACTACGACACTGGACAACAACACTGTG AGCGTTTCTGACCACATGCGGATTAGTTTAGAAATAAGGCGGGCAATGAA GCACACTAGCATTGAAAGGCTGTGGTAAGCATGGACAATTTGGAATACAG GAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAACAAGAAG AGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATCGAATCTA ACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCTCGATCAA TTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGCAGCACTG GCAATGAAGTGACGTTGTCGAACCCAACTCAGGTGCCATGGACGCGGCCT TTCTCGGCAAGGCCGGTCGAGATAAATAATGTTGGCAGCCATGTTCACGT AGACACGTTGCTAGTTATAGAGGATGAGCAAAGGGCAAATGCAAATCAGG GGCTTGATGCTACCGAAGACATCATCCATGCTGATCGACCCCGCAAGGAG AATACTTTGGAGAGTAATCGCCTTGGCCGTGACAGAGAGGTGTGCGTCCA AGAGAAGGAATTTCAGGATGACGAGCTGCTTTCATGTCAGAGGCTCGAAG GCTCGACATCAATGCTGAACATTGGTTCAATGGGGAAGCTACGTTCGCAT GCGGGTATTACTCTGTCAAGAAGCAGCGCGGACGCGGGTGGCGAGGGGCT TCGTCGTGGGCGAAAAGGTGCGTCTTTGAGCACGCTCAAATCTTGCGAAT TTTGCTCGCTTAAAAAAATGAAATGCGACGCAAAACTACCCTGCAAAGCT TGTCTTACGCGGAATCAAATTTGCGAGTACCGACAGCGGAAGAGTCGTCT CCCTCGAGGCAAGAGGTCTTTCTCCCCTCCTAAGATTATCAAGCGGGCAG GTCCTCCCTATGTGCCGGCCGCGGTGGCTTCCAAGCCGGTCGTTTCCTCT CCTACTATCGGCTTACTTCCTCAATCGACATATAGCAGAGGAGGATCGAC AAGCGCGCTTGCCATAGGACTCAGGGAAAGACGCGAAGGTGGCTTGGCCG CGAGCGTGCAAGAATTTGCAAGCCGCGAGCAATTCGCAGAAACAGATCCC AGGGCGTATTTCCATAGGAGAGTACTCGACACTGAGGTCATGAATAGAGA GGATCATGCCGTCCTGACAAATGACAGTGCTCCTGGGGCCTCCCTCCCTT TGCGAGATGGAACGTCGGTGCCAAGAAGTGACGTCATCAGGACAAGGCTT TCTGGTAAGGCAGCTATTCACCCATCGCCAAGAACACGGCAGCAGGCGAG AGGGCAAACAGAGAATGTCAGTGGGCATCGCGACGTAAACGAGGAGAGTA TGGAACTATCTCTTCCACGCTACCGGGGGGGGCACCCTTCTCTCTCTCAC TCCCATTACTCCCATCAATCACTTCCTGCGGAGGCCATAGACATGGCGGA TCGCGAGGTTGCTGCGTTGACAGAGATGACACCCACCCTGATGTGGAGCG TAAAGGATGAAAATCCCCCTATCGTATCAGGCCACATGACCGGGGCTCCA GAGGAGGACAGCGGCGGTGGAAGGGCACGGCCTAGCCCGCAACGCACCAT CGGTGTGGAGGACGGCCCCCCTACATCCCACCACACATTTTCTAGCATTG CAGCTTTCGAACCGGTAGATAGATCGGCAATGACTCCGAGGACTCGTCAG AAGGAGCATCAGCGCTCTACCAAGCACGAGCGGGAGGAATCAGTCGAAAG AGACGACATTTGGGAGGGTGAACAATACCAGGACCAGACGAGACATTTGC AACAGTCGAACGATGAATCTGAGCGTTCGGATCACCAGAGAGGTGTACAA TGGCAGTTTTCAAATCCTAGCTCAGCCGGCTCCACCTCCCCTTCCTCTTT CATTCTGTCATTCCCGACTACTCAAGATATGAATGAAAATGTGAACACAT TTCGAGCACGGGAATTGATCACAGACGCAAATGATAACGGCCTGCGAGTG GAAATCTCTTTTCTTGATCCTTGGAGAAGACTGGATTCCATGAACGCGTC AAATCAAGGCTGAGGTCGTGGTATCTCAAATGGAGTGCGGACGGTCGGAT TTGTTGGAATTAGCGGAAGTCGGAGCTCTTACGACAATGAAAAGAAAGTA AGGAGAGTAAGATGTATTGCAATTCCGGCACACCATCTCGTTGTTTAACT CTTTGAAACGCGGAATATATCTAGATATCAATTACACGTGTCAAAAGACG CTTGCAAACTGTATTGGAGGAAGATACCCTGCTCTGTCTATTTCACCTTT TTGTGTGCCAAAAAGTCATCCCTTCGCATCGTAAAAAGCGATTTATAAAC CAAACTAAAATAAGAACGGATACAGGAAGGTGCAAGACAAAATTAAATAC GGCACTTTTGATACAATTCAGAATATCATTTTTGCAAGTCAAAGGACGCA CGCGCCTTTTTCAATTATCGATTAACTCGGCCC back to topprotein sequence of rna9877 >rna9877-protein ID=rna9877-protein|Name=rna9877|organism=Nannochloropsis gaditana|type=polypeptide|length=666bp MDNLEYRRVVRVAHLGADNKKQEEVCEVSVVVRPLLSSNLTEQQLLQIVK TVVSSINSGSERPATAEGSCGSATSPSSTGNEVTLSNPTQVPWTRPFSAR PVEINNVGSHVHVDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLE SNRLGRDREVCVQEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGIT LSRSSADAGGEGLRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTR NQICEYRQRKSRLPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIG LLPQSTYSRGGSTSALAIGLRERREGGLAASVQEFASREQFAETDPRAYF HRRVLDTEVMNREDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKA AIHPSPRTRQQARGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYS HQSLPAEAIDMADREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDS GGGRARPSPQRTIGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQ RSTKHEREESVERDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFS NPSSAGSTSPSSFILSFPTTQDMNENVNTFRARELITDANDNGLRVEISF LDPWRRLDSMNASNQG back to topmRNA from alignment at KK037257.1:35316..38369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9877 ID=rna9877|Name=rna9877|organism=Nannochloropsis gaditana|type=mRNA|length=3054bp|location=Sequence derived from alignment at KK037257.1:35316..38369- (Nannochloropsis gaditana) GTTCTAGCTATGAGGCTGCTATTCCCGGGCTCACATATTGGGATTGCCGA
CGGCATCGCCTTTTGCACACCGTCGTATGAAGGCATGGTGTATCCTTCTC
ATTTCTTGCTTATGGGTGATGTGTGCGAGCTTGTAAAGTTCAATGGGCCT
TGCTTACTCTTTAGGATCACTTTGCGTCAGGTGTGCAGACCTCCGAGTTG
ATGGCTTTTCACGATAAAAACAATTACCGAGGGTGAAGCCATTTGTGCAA
TCTTTCTTCTGAAAGCCATCAGCACTACGACACTGGACAACAACACTGTG
AGCGTTTCTGACCACATGCGGATTAGTTTAGAAATAAGGCGGGCAATGAA
GCACACTAGCATTGAAAGGCTGTGGTAAGCATGGACAATTTGGAATACAG
GAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAACAAGAAG
AGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATCGAATCTA
ACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCTCGATCAA
TTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGCAGGTAAG
CTACATGCTGGAGAGAAGCCTCTGTCCGCATTGAGAGCGAACCATGCACG
TATATTGCATGTCAGCTTCCACGTGACCTGTCTCACCTTATAAACGCTCA
GAAAGGCTACAATGGTTTTAGGGGAAGGGATGAGGATAGAAGTAGACTAT
GTTTTTGGCATTACAAATCGCAAGATTCAAGATTTTCCCGCACTATGACG
CAGCAAATTAGGCTAGTTCATGCTTCTTGCTCAATATTCACCAAACAGTG
CAACCTCCCCCTCAAGCACTGGCAATGAAGTGACGTTGTCGAACCCAACT
CAGGTGCCATGGACGCGGCCTTTCTCGGCAAGGCCGGTCGAGATAAATAA
TGTTGGCAGCCATGTTCACGTAGACACGTTGCTAGTTATAGAGGATGAGC
AAAGGGCAAATGCAAATCAGGGGCTTGATGCTACCGAAGACATCATCCAT
GCTGATCGACCCCGCAAGGAGAATACTTTGGAGAGTAATCGCCTTGGCCG
TGACAGAGAGGTGTGCGTCCAAGAGAAGGAATTTCAGGATGACGAGCTGC
TTTCATGTCAGAGGCTCGAAGGCTCGACATCAATGCTGAACATTGGTTCA
ATGGGGAAGCTACGTTCGCATGCGGGTATTACTCTGTCAAGAAGCAGCGC
GGACGCGGGTGGCGAGGGGCTTCGTCGTGGGCGAAAAGGTGCGTCTTTGA
GCACGCTCAAATCTTGCGAATTTTGCTCGCTTAAAAAAATGAAATGCGAC
GCAAAACTACCCTGCAAAGCTTGTCTTACGCGGAATCAAATTTGCGAGTA
CCGACAGCGGAAGAGTCGTCTCCCTCGAGGCAAGAGGTCTTTCTCCCCTC
CTAAGATTATCAAGCGGGCAGGTCCTCCCTATGTGCCGGCCGCGGTGGCT
TCCAAGCCGGTCGTTTCCTCTCCTACTATCGGCTTACTTCCTCAATCGAC
ATATAGCAGAGGAGGATCGACAAGCGCGCTTGCCATAGGACTCAGGGAAA
GACGCGAAGGTGGCTTGGCCGCGAGCGTGCAAGAATTTGCAAGCCGCGAG
CAATTCGCAGAAACAGATCCCAGGGCGTATTTCCATAGGAGAGTACTCGA
CACTGAGGTCATGAATAGAGAGGATCATGCCGTCCTGACAAATGACAGTG
CTCCTGGGGCCTCCCTCCCTTTGCGAGATGGAACGTCGGTGCCAAGAAGT
GACGTCATCAGGACAAGGCTTTCTGGTAAGGCAGCTATTCACCCATCGCC
AAGAACACGGCAGCAGGCGAGAGGGCAAACAGAGAATGTCAGTGGGCATC
GCGACGTAAACGAGGAGAGTATGGAACTATCTCTTCCACGCTACCGGGGG
GGGCACCCTTCTCTCTCTCACTCCCATTACTCCCATCAATCACTTCCTGC
GGAGGCCATAGACATGGCGGATCGCGAGGTTGCTGCGTTGACAGAGATGA
CACCCACCCTGATGTGGAGCGTAAAGGATGAAAATCCCCCTATCGTATCA
GGCCACATGACCGGGGCTCCAGAGGAGGACAGCGGCGGTGGAAGGGCACG
GCCTAGCCCGCAACGCACCATCGGTGTGGAGGACGGCCCCCCTACATCCC
ACCACACATTTTCTAGCATTGCAGCTTTCGAACCGGTAGATAGATCGGCA
ATGACTCCGAGGACTCGTCAGAAGGAGCATCAGCGCTCTACCAAGCACGA
GCGGGAGGAATCAGTCGAAAGAGACGACATTTGGGAGGGTGAACAATACC
AGGACCAGACGAGACATTTGCAACAGTCGAACGATGAATCTGAGCGTTCG
GATCACCAGAGAGGTGTACAATGGCAGTTTTCAAATCCTAGCTCAGCCGG
CTCCACCTCCCCTTCCTCTTTCATTCTGTCATTCCCGACTACTCAAGATA
TGAATGAAAATGTGAACACATTTCGAGCACGGGAATTGATCACAGACGCA
AATGATAACGGCCTGCGAGTGGAAATCTCTTTTCTTGATCCTTGGAGAAG
ACTGGATTCCATGAACGCGTCAAATCAAGGCTGAGGTCGTGGTATCTCAA
ATGGAGTGCGGACGGTCGGATTTGTTGGAATTAGCGGAAGTCGGAGCTCT
TACGACAATGAAAAGAAAGTAAGGAGAGTAAGATGTATTGCAATTCCGGC
ACACCATCTCGTTGTTTAACTCTTTGAAACGCGGAATATATCTAGATATC
AATTACACGTGTCAAAAGACGCTTGCAAACTGTATTGGAGGAAGATACCC
TGCTCTGTCTATTTCACCTTTTTGTGTGCCAAAAAGTCATCCCTTCGCAT
CGTAAAAAGCGATTTATAAACCAAACTAAAATAAGAACGGATACAGGAAG
GTGCAAGACAAAATTAAATACGGCACTTTTGATACAATTCAGAATATCAT
TTTTGCAAGTCAAAGGACGCACGCGCCTTTTTCAATTATCGATTAACTCG
GCCC back to topCoding sequence (CDS) from alignment at KK037257.1:35316..38369- >rna9877 ID=rna9877|Name=rna9877|organism=Nannochloropsis gaditana|type=CDS|length=4002bp|location=Sequence derived from alignment at KK037257.1:35316..38369- (Nannochloropsis gaditana) TGCAACCTCCCCCTCAAGCACTGGCAATGAAGTGACGTTGTCGAACCCAA CTCAGGTGCCATGGACGCGGCCTTTCTCGGCAAGGCCGGTCGAGATAAAT AATGTTGGCAGCCATGTTCACGTAGACACGTTGCTAGTTATAGAGGATGA GCAAAGGGCAAATGCAAATCAGGGGCTTGATGCTACCGAAGACATCATCC ATGCTGATCGACCCCGCAAGGAGAATACTTTGGAGAGTAATCGCCTTGGC CGTGACAGAGAGGTGTGCGTCCAAGAGAAGGAATTTCAGGATGACGAGCT GCTTTCATGTCAGAGGCTCGAAGGCTCGACATCAATGCTGAACATTGGTT CAATGGGGAAGCTACGTTCGCATGCGGGTATTACTCTGTCAAGAAGCAGC GCGGACGCGGGTGGCGAGGGGCTTCGTCGTGGGCGAAAAGGTGCGTCTTT GAGCACGCTCAAATCTTGCGAATTTTGCTCGCTTAAAAAAATGAAATGCG ACGCAAAACTACCCTGCAAAGCTTGTCTTACGCGGAATCAAATTTGCGAG TACCGACAGCGGAAGAGTCGTCTCCCTCGAGGCAAGAGGTCTTTCTCCCC TCCTAAGATTATCAAGCGGGCAGGTCCTCCCTATGTGCCGGCCGCGGTGG CTTCCAAGCCGGTCGTTTCCTCTCCTACTATCGGCTTACTTCCTCAATCG ACATATAGCAGAGGAGGATCGACAAGCGCGCTTGCCATAGGACTCAGGGA AAGACGCGAAGGTGGCTTGGCCGCGAGCGTGCAAGAATTTGCAAGCCGCG AGCAATTCGCAGAAACAGATCCCAGGGCGTATTTCCATAGGAGAGTACTC GACACTGAGGTCATGAATAGAGAGGATCATGCCGTCCTGACAAATGACAG TGCTCCTGGGGCCTCCCTCCCTTTGCGAGATGGAACGTCGGTGCCAAGAA GTGACGTCATCAGGACAAGGCTTTCTGGTAAGGCAGCTATTCACCCATCG CCAAGAACACGGCAGCAGGCGAGAGGGCAAACAGAGAATGTCAGTGGGCA TCGCGACGTAAACGAGGAGAGTATGGAACTATCTCTTCCACGCTACCGGG GGGGGCACCCTTCTCTCTCTCACTCCCATTACTCCCATCAATCACTTCCT GCGGAGGCCATAGACATGGCGGATCGCGAGGTTGCTGCGTTGACAGAGAT GACACCCACCCTGATGTGGAGCGTAAAGGATGAAAATCCCCCTATCGTAT CAGGCCACATGACCGGGGCTCCAGAGGAGGACAGCGGCGGTGGAAGGGCA CGGCCTAGCCCGCAACGCACCATCGGTGTGGAGGACGGCCCCCCTACATC CCACCACACATTTTCTAGCATTGCAGCTTTCGAACCGGTAGATAGATCGG CAATGACTCCGAGGACTCGTCAGAAGGAGCATCAGCGCTCTACCAAGCAC GAGCGGGAGGAATCAGTCGAAAGAGACGACATTTGGGAGGGTGAACAATA CCAGGACCAGACGAGACATTTGCAACAGTCGAACGATGAATCTGAGCGTT CGGATCACCAGAGAGGTGTACAATGGCAGTTTTCAAATCCTAGCTCAGCC GGCTCCACCTCCCCTTCCTCTTTCATTCTGTCATTCCCGACTACTCAAGA TATGAATGAAAATGTGAACACATTTCGAGCACGGGAATTGATCACAGACG CAAATGATAACGGCCTGCGAGTGGAAATCTCTTTTCTTGATCCTTGGAGA AGACTGGATTCCATGAACGCGTCAAATCAAGGCTGAATGGACAATTTGGA ATACAGGAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAAC AAGAAGAGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATCG AATCTAACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCTC GATCAATTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGCA GTGCAACCTCCCCCTCAAGCACTGGCAATGAAGTGACGTTGTCGAACCCA ACTCAGGTGCCATGGACGCGGCCTTTCTCGGCAAGGCCGGTCGAGATAAA TAATGTTGGCAGCCATGTTCACGTAGACACGTTGCTAGTTATAGAGGATG AGCAAAGGGCAAATGCAAATCAGGGGCTTGATGCTACCGAAGACATCATC CATGCTGATCGACCCCGCAAGGAGAATACTTTGGAGAGTAATCGCCTTGG CCGTGACAGAGAGGTGTGCGTCCAAGAGAAGGAATTTCAGGATGACGAGC TGCTTTCATGTCAGAGGCTCGAAGGCTCGACATCAATGCTGAACATTGGT TCAATGGGGAAGCTACGTTCGCATGCGGGTATTACTCTGTCAAGAAGCAG CGCGGACGCGGGTGGCGAGGGGCTTCGTCGTGGGCGAAAAGGTGCGTCTT TGAGCACGCTCAAATCTTGCGAATTTTGCTCGCTTAAAAAAATGAAATGC GACGCAAAACTACCCTGCAAAGCTTGTCTTACGCGGAATCAAATTTGCGA GTACCGACAGCGGAAGAGTCGTCTCCCTCGAGGCAAGAGGTCTTTCTCCC CTCCTAAGATTATCAAGCGGGCAGGTCCTCCCTATGTGCCGGCCGCGGTG GCTTCCAAGCCGGTCGTTTCCTCTCCTACTATCGGCTTACTTCCTCAATC GACATATAGCAGAGGAGGATCGACAAGCGCGCTTGCCATAGGACTCAGGG AAAGACGCGAAGGTGGCTTGGCCGCGAGCGTGCAAGAATTTGCAAGCCGC GAGCAATTCGCAGAAACAGATCCCAGGGCGTATTTCCATAGGAGAGTACT CGACACTGAGGTCATGAATAGAGAGGATCATGCCGTCCTGACAAATGACA GTGCTCCTGGGGCCTCCCTCCCTTTGCGAGATGGAACGTCGGTGCCAAGA AGTGACGTCATCAGGACAAGGCTTTCTGGTAAGGCAGCTATTCACCCATC GCCAAGAACACGGCAGCAGGCGAGAGGGCAAACAGAGAATGTCAGTGGGC ATCGCGACGTAAACGAGGAGAGTATGGAACTATCTCTTCCACGCTACCGG GGGGGGCACCCTTCTCTCTCTCACTCCCATTACTCCCATCAATCACTTCC TGCGGAGGCCATAGACATGGCGGATCGCGAGGTTGCTGCGTTGACAGAGA TGACACCCACCCTGATGTGGAGCGTAAAGGATGAAAATCCCCCTATCGTA TCAGGCCACATGACCGGGGCTCCAGAGGAGGACAGCGGCGGTGGAAGGGC ACGGCCTAGCCCGCAACGCACCATCGGTGTGGAGGACGGCCCCCCTACAT CCCACCACACATTTTCTAGCATTGCAGCTTTCGAACCGGTAGATAGATCG GCAATGACTCCGAGGACTCGTCAGAAGGAGCATCAGCGCTCTACCAAGCA CGAGCGGGAGGAATCAGTCGAAAGAGACGACATTTGGGAGGGTGAACAAT ACCAGGACCAGACGAGACATTTGCAACAGTCGAACGATGAATCTGAGCGT TCGGATCACCAGAGAGGTGTACAATGGCAGTTTTCAAATCCTAGCTCAGC CGGCTCCACCTCCCCTTCCTCTTTCATTCTGTCATTCCCGACTACTCAAG ATATGAATGAAAATGTGAACACATTTCGAGCACGGGAATTGATCACAGAC GCAAATGATAACGGCCTGCGAGTGGAAATCTCTTTTCTTGATCCTTGGAG AAGACTGGATTCCATGAACGCGTCAAATCAAGGCTGAATGGACAATTTGG AATACAGGAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAA CAAGAAGAGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATC GAATCTAACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCT CGATCAATTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGC AG back to top
|