rna9875, rna9875 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9875
Unique Name	rna9875
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1548
Alignment location	KK037257.1:32385..33697 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100314g4.5180.mrna
Orig protein id	gnl\|cribi\|Naga_100314g4.5180
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:32385..33697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100314g4	gene9586	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9875	rna9875-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20826.1	cds9844	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:32385..33697+
coding sequence from alignment at KK037257.1:32385..33697+

mRNA sequence

>rna9875 ID=rna9875|Name=rna9875|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp
ATCATCGACGTCCGCGGCGGTGGATGGGTAGAGGCGCGCTTCACGGTGGC
GTTGCCGGCGCGCGGCCGAAGCATCGAAGGCCTCTGGTGCTCCAAGATCC
TTCTAGAACGTCTCCCCGACCTGGTGGCCCGCTCCCTCCTCTTCTCCTCC
CTGGACGCTGCCCACCTCCGGGCCCACATCCTCTCTGTGGAGGACCAGGA
AGTCCTCCGCTCCCTCCTCCCATCGGCGGGCCTCGTCGGCTTTATTCGGA
ACGGCGCCCTCTTGCCCCGGAAGTCCGGCCACGTGGACCTGCCCATGGAC
GCCGCCACCGCCCTCCCCTTCCAGTCGCCCCCTACCCTGGAGCGAGAGGT
AACGCTGCCCAATGCGGGGAAGCTGAAAGGCATGGGCATACCCAAGGGCA
TTACCCTCATCGTCGGCGGGGGCTTCCATGGGAAAAGCACGCTCCTGCAA
GCACTGGAGTTAGGCATCCACAACCACATCCCCGGGGACGGGCGGGAATT
CGTGTGCGTGGATCCCAGCGCTGTCAAAGTGAGGGCCGAAGATGGCCGGG
CGGTCACGGAGGTGAACATCACGCCGTTCATCGACAACCTGCCCTTCGGG
AAGCGCACCGACAGCTTTTGCACCGCGGACGCCTCGGGCTCCACCTCCCA
GGCTGCCAGCATCATCGAAGCCCTTGAGGTCGGCGCCCAGGTGCTCCTGA
TGGACGAGGACACGTGTGCCACCAACTTCATGATTCGCGACCTTAGGATG
CAGCTCCTTGTCTCCAAGGACAAAGAGCCCATCACTCCCTTTCTCGCCAA
GGTCCAAGCGCTTTACACCCAGCACGGAATCTCCTCCCTCCTTGTCATCG
GCGGGGCGGGCGACTACTTCGAGGTGGCCGATACCGTCATCATGATGGAT
AACTACACGCCCCTCGACAAGACTGTGGCAGCGAAGGCCATCGCCGACCA
GTACTCCTCCTCTGCCGGCACCTCCTTCTTCGCCCCTCACTTTGGCACTC
TCTCGCGTCGGTTGCCTGTGCCCGCCTCCCTGAGGACAGAGGGGAAGGTG
GTCGCCCGCGGGAAGGACAAGCTTCAGTATGGGGAGGAAGATGTGGACCT
GTCGGGTGTCGAGCAGCTCGTGGAGAAGCGAAGTTTTGCCGTCATCCGAG
GCGTGACATGCAAATGTGGGAAGGCAAAGAAAGAAATGGACGTAGATGGA
AGAGATTCACAAATGAAAGTAGTCAGTCGAGTGCAAGATGTCAACCACCT
CGAGCCTATCGCTCGCTTTGTTCTCCCCTTCCAACCGCTCTTGCACTCCT
CGCAATCCTTCTATCCATCATACGGCATTTGGCCACGTGTCTTCATGGGC
ATGGACTTTATAGAAGCCTGTTTGACATCTTCACTAGCCTGCTGTCCTGA
CATCTGTGGGCTTGTCTCCATCGCTAGCATCGTACCATTGTCCTCCTCCT
ATCTCGGTGCCTCAGCTGGGAGTGATACAATAAAAAGAAAAATGTCGAAG
GTACGACGGAGTCGTGCGATTCGCATGCTTCAAGAATCAAGGCGATAG

protein sequence of rna9875

>rna9875-protein ID=rna9875-protein|Name=rna9875|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MLVAPVAVAFPPAPYKRCAPSLPPTSLSEHRRPLSSAHSGFHPCKVIVSS
SRNITFYDRRDKSFPLCLARAEARFALKEETLQSAVLTMRAREQAVTFHS
FVSALLAGFSNRVLLPSVKGKDGLGAGKTTNHSLACAVLLSNHLAKDIEE
SLPATHVSRHPPSSLWSGGWPWVPKSSPAVFPVLLLSLLLQASLLLLVLS
LTESLQCVKPKGLADTLLSSDRRRLPSRRLVLRKRISRVATFMSLTVKFS
EMFRTFFRTLNCAVFGTSLFLGHPSECYRLRKC

mRNA from alignment at KK037257.1:32385..33697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9875 ID=rna9875|Name=rna9875|organism=Nannochloropsis gaditana|type=mRNA|length=1313bp|location=Sequence derived from alignment at KK037257.1:32385..33697+ (Nannochloropsis gaditana)
ATGCTCGTTGCTCCCGTCGCTGTTGCatttcctccagctccctACAAGCG
ATGCgccccttctcttccgccaAGTAAGTACTTCCATCGTCCACTGCTAG
TTGTGGCTCTGAAAGACGGAAGATGTGTtgaacagggagggaggtagccT
CATCCATTGCTAAAGACCCTCCGAGGTCCTGCATGGGCGAAAGAGCAATT
ACTCCAGCATACGGCGCCTGTCTCTGTGCGCCTACACTTTCACGAGCCAT
GGCTGCTGCTAAAGCTCCCCCGCTTTTTaatgtctccctcctttctctgc
aCACACCGTCATTGGCCCAGCCAGTTTGAGCGAGCACAGAAggcctcttt
cttctgctCACAGTGGTTTTCATCCCTGCAAGGTCATTGTGTCCAGCTCG
AGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCCCCTGTGTCT
CGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACACTCCAGTCCG
CGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTTCACTCTTTT
GTGTCTGCATTGCTCGCAGGATTTTCGAACCgcgtgcttcttccttcggt
gaagggaaaagatgggCTGGGCGCTGGCAAGACCACCAACCACAGCCTCG
CGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAGTTGAGGGATCGGTTTC
TGACTCGGTTCCGGCGTCTAAATGTGTGTTCATGCCACCCTCTATTCCCA
ACGACTGAACCGATGAAGCAGAGGATATCGAGGAAAGCCTTCCAGCCACA
CACGTCTCTAGgcacccgccctcctccctatgGTCAGGGGGGTGGCCGTG
GGTACCGAAGTCGTCACCGGCTGTCTTTCCAGTCTTGCTGCTCTCTTTAC
TGCTACAAGCGTCCCTACTTCTACTCGTATTGTCCTTGACAGAGTCACTC
CAATGCGTCAAGCCGAAGGGGCTGGCGGATACATTGCTGTCCTCTGATCG
ACGGCGCCTCCCTTCACGGAGACTGGTGCTGCGCAAGCGCATATCACGAG
TAGCCACATTTATGAGCTTGACGGTTATGTTTTGTTCCTGAGCAGGCTTA
CGTTCAGAAaacggaggaagcggcacTCCTGAGACGGCAAAGATCTCATG
GAAATTGGGAGTACTTGCCTCATCAATGTCGCTTCTGTTGGTGAAAAAGG
TTAAATTCAGCGAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCT
GTCTTTGGGAcatccctttttttgggACATCCCTCTGAATGCTATCGATT
GCGTAAATGCTGA

Coding sequence (CDS) from alignment at KK037257.1:32385..33697+

>rna9875 ID=rna9875|Name=rna9875|organism=Nannochloropsis gaditana|type=CDS|length=3408bp|location=Sequence derived from alignment at KK037257.1:32385..33697+ (Nannochloropsis gaditana)
ATGCTCGTTGCTCCCGTCGCTGTTGCatttcctccagctccctACAAGCG
ATGCgccccttctcttccgccaACCAGTTTGAGCGAGCACAGAAggcctc
tttcttctgctCACAGTGGTTTTCATCCCTGCAAGGTCATTGTGTCCAGC
TCGAGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCCCCTGTG
TCTCGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACACTCCAGT
CCGCGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTTCACTCT
TTTGTGTCTGCATTGCTCGCAGGATTTTCGAACCgcgtgcttcttccttc
ggtgaagggaaaagatgggCTGGGCGCTGGCAAGACCACCAACCACAGCC
TCGCGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAAGGATATCGAGGAA
AGCCTTCCAGCCACACACGTCTCTAGgcacccgccctcctccctatgGTC
AGGGGGGTGGCCGTGGGTACCGAAGTCGTCACCGGCTGTCTTTCCAGTCT
TGCTGCTCTCTTTACTGCTACAAGCGTCCCTACTTCTACTCGTATTGTCC
TTGACAGAGTCACTCCAATGCGTCAAGCCGAAGGGGCTGGCGGATACATT
GCTGTCCTCTGATCGACGGCGCCTCCCTTCACGGAGACTGGTGCTGCGCA
AGCGCATATCACGAGTAGCCACATTTATGAGCTTGACGGTTAAATTCAGC
GAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCTGTCTTTGGGAc
atccctttttttgggACATCCCTCTGAATGCTATCGATTGCGTAAATGCT
GAATGCTCGTTGCTCCCGTCGCTGTTGCatttcctccagctccctACAAG
CGATGCgccccttctcttccgccaACCAGTTTGAGCGAGCACAGAAggcc
tctttcttctgctCACAGTGGTTTTCATCCCTGCAAGGTCATTGTGTCCA
GCTCGAGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCCCCTG
TGTCTCGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACACTCCA
GTCCGCGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTTCACT
CTTTTGTGTCTGCATTGCTCGCAGGATTTTCGAACCgcgtgcttcttcct
tcggtgaagggaaaagatgggCTGGGCGCTGGCAAGACCACCAACCACAG
CCTCGCGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAAGGATATCGAGG
AAAGCCTTCCAGCCACACACGTCTCTAGgcacccgccctcctccctatgG
TCAGGGGGGTGGCCGTGGGTACCGAAGTCGTCACCGGCTGTCTTTCCAGT
CTTGCTGCTCTCTTTACTGCTACAAGCGTCCCTACTTCTACTCGTATTGT
CCTTGACAGAGTCACTCCAATGCGTCAAGCCGAAGGGGCTGGCGGATACA
TTGCTGTCCTCTGATCGACGGCGCCTCCCTTCACGGAGACTGGTGCTGCG
CAAGCGCATATCACGAGTAGCCACATTTATGAGCTTGACGGTTAAATTCA
GCGAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCTGTCTTTGGG
AcatccctttttttgggACATCCCTCTGAATGCTATCGATTGCGTAAATG
CTGAATGCTCGTTGCTCCCGTCGCTGTTGCatttcctccagctccctACA
AGCGATGCgccccttctcttccgccaACCAGTTTGAGCGAGCACAGAAgg
cctctttcttctgctCACAGTGGTTTTCATCCCTGCAAGGTCATTGTGTC
CAGCTCGAGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCCCC
TGTGTCTCGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACACTC
CAGTCCGCGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTTCA
CTCTTTTGTGTCTGCATTGCTCGCAGGATTTTCGAACCgcgtgcttcttc
cttcggtgaagggaaaagatgggCTGGGCGCTGGCAAGACCACCAACCAC
AGCCTCGCGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAAGGATATCGA
GGAAAGCCTTCCAGCCACACACGTCTCTAGgcacccgccctcctccctat
gGTCAGGGGGGTGGCCGTGGGTACCGAAGTCGTCACCGGCTGTCTTTCCA
GTCTTGCTGCTCTCTTTACTGCTACAAGCGTCCCTACTTCTACTCGTATT
GTCCTTGACAGAGTCACTCCAATGCGTCAAGCCGAAGGGGCTGGCGGATA
CATTGCTGTCCTCTGATCGACGGCGCCTCCCTTCACGGAGACTGGTGCTG
CGCAAGCGCATATCACGAGTAGCCACATTTATGAGCTTGACGGTTAAATT
CAGCGAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCTGTCTTTG
GGAcatccctttttttgggACATCCCTCTGAATGCTATCGATTGCGTAAA
TGCTGAATGCTCGTTGCTCCCGTCGCTGTTGCatttcctccagctccctA
CAAGCGATGCgccccttctcttccgccaACCAGTTTGAGCGAGCACAGAA
ggcctctttcttctgctCACAGTGGTTTTCATCCCTGCAAGGTCATTGTG
TCCAGCTCGAGGAACATCACTTTTTATGACCGAAGGGATAAAAGCTTTCC
CCTGTGTCTCGCCCGGGCGGAGGCGAGGTTTGCGCTCAAGGAAGAAACAC
TCCAGTCCGCGGTGCTGACAATGAGAGCAAGGGAGCAAGCCGTCACATTT
CACTCTTTTGTGTCTGCATTGCTCGCAGGATTTTCGAACCgcgtgcttct
tccttcggtgaagggaaaagatgggCTGGGCGCTGGCAAGACCACCAACC
ACAGCCTCGCGTGCGCAGTTTTGCTCTCCAATCACCTGGCCAAGGATATC
GAGGAAAGCCTTCCAGCCACACACGTCTCTAGgcacccgccctcctccct
atgGTCAGGGGGGTGGCCGTGGGTACCGAAGTCGTCACCGGCTGTCTTTC
CAGTCTTGCTGCTCTCTTTACTGCTACAAGCGTCCCTACTTCTACTCGTA
TTGTCCTTGACAGAGTCACTCCAATGCGTCAAGCCGAAGGGGCTGGCGGA
TACATTGCTGTCCTCTGATCGACGGCGCCTCCCTTCACGGAGACTGGTGC
TGCGCAAGCGCATATCACGAGTAGCCACATTTATGAGCTTGACGGTTAAA
TTCAGCGAAATGTTTAGAACTTTTTTTAGAACTTTGAATTGTGCTGTCTT
TGGGAcatccctttttttgggACATCCCTCTGAATGCTATCGATTGCGTA
AATGCTGA

Synonyms

Publications