rna9861, rna9861 (mRNA) Nannochloropsis gaditana

Overview
Namerna9861
Unique Namerna9861
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1331
Alignment locationKK037256.1:289171..290215 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101681g1.4002.mrna
Orig protein idgnl|cribi|Naga_101681g1.4002
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:289171..290215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101681g1gene9573Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20843.1cds9830Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9861rna9861-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9861 ID=rna9861|Name=rna9861|organism=Nannochloropsis gaditana|type=mRNA|length=1331bp
CACCGTCCTTTTCTTTTGGGGGGGTGGCACTGCCTCGAGCTCGACGCACG
TTTCCAATGCAAGGAGCTTGAGGGAGGATTTCGATGCACTGCATTTTCAA
ACGCTGTGTTTGTACACGGTTTTCCTTTGAAGTGGGTGTGAATGCCCAGT
GTAATTTATGCCCGTGTACGGCGGTTTTTGGTTTTTTCCCCCTCAACCCT
TCCTATTCCCCCCCTTTTGCCACCCTATAATAATCGCCTTCGTATAAAGC
GAGGGGAGACTTCAACAAAAGGATGAGACAGACACACAGCCATATACCAC
GCGACAGCCGCAGGGGTGTGGTGTGGCAAGGTCACAAATTTGCAATATCG
GCGCTCAGTAAGGCGGGCCTGCTGTTTGTGGCATCAAGCTGAAGACAATT
CACGGGAAGTTTGGGACGCGGGCTGGCAGCTGGGAGAGGGGGAGGAAGAG
GTAGACCCATTCAGGATAAGTAACCTCGGACACAATGCCCGCCACCGGCC
ACGAACAGCAGCATCTACACGATGCAGAGCCTCACGGGGACGTGCAGCCC
CCGCCCATGGACAGCGGGGGGCACAAACAACACGACGGCCCGGGAGATAG
GAGTCAACCTCCCCCCTTTTCTCGACTTGCATCTCCCCTCCTTCCAGGGC
ATGCGGCCTTTGCGCCTGTCCTCCTTCCTCCCGTGACTCCCCTTCCCTTG
TCCTCCTCGTGCGCCCCTGCAACCCAACCTTTGTCGACGTTTCCTCCCCC
GGCGGTGCCAGCACGGCCTGCCCTCCCTCCCTCCTTCCCTCCCTCCGCCG
CTTCCTCCCTCCTTCCCTCCGCCGGCACCTCCTCCTCGTTCCCTTCCCCA
GACCCGAGCTGCTTCCTCCCCACCCTTTCCATGGCTGCCGCACTCGCCTC
TTCCCCTGCCACGTCCTCCGGCGTCAGCCTCCCTCCTCTCCCCTCCGCCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCCCCTT
CCTTTTCCTCCCCCTCGTACCACCCTGGCCGGCCAATACCTTCCTCTAAA
CCCCCTCTTTCCGGGCCTCAAGCTCATTTATGCCCAGCCGCCTGTCTACC
TGATTGAAAACTTCCTGCCCCCAGACGAGTGTCAAGCGCTGATAATGGCG
GCGTCCGGCTTTCTCATTCCAGCCCCGGTTGTGGGGGCGGGCAACGGGGA
GCTGAGTGGGAGCCGCACCTCCTCCACCTGCTACTTGGCGCGCGAGGACG
TTCCCTCCCTTCTCAGCAAGGTCTGTCTTCTCACTGGGAAGCCTCCTCAT
GACATCGAACTCCCTCAAGTTGGACGGTAGG
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protein sequence of rna9861

>rna9861-protein ID=rna9861-protein|Name=rna9861|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MSHPFLKTKEPLVKLPAFRLKRKRNACRATEKSELGPLLVSFWGVNLTPG
TSLSIPSWTVATQVTTRKRRRKEGTVDEEGAWRKGEKERGSEGSVPGKVH
GPTPPPPRP
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mRNA from alignment at KK037256.1:289171..290215-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9861 ID=rna9861|Name=rna9861|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp|location=Sequence derived from alignment at KK037256.1:289171..290215- (Nannochloropsis gaditana)
GACTTCCGTGAAAAGCAACAGGGCTGTGCTATGACACGGACGAAAGGGTG
GAATGGCGCATAGGTGTGGTGAGCAGGATGATTGAGGACTTTGGGAAGAG
GGGTGTAAGACGCCGGGGGGTTAAGTATCCTCATCTAAAGCGAGGTTCAG
AAGTGCAACGATGCCTGAATTAATTCTACACGGCTTACGTCCTTCATCGT
TCCTATCGCGTTGCTCCTATGGATGGGTGGCACTACAGTGTAAGGCTTTC
AATGGCGTAGGTGGCGTGATTGGAATTATTTTCAGAACGGCAGCGGTCTA
CCCAGAATGCGATCACCCTTGTACCCCCCGATTAAACTAGGGTCAGTGAC
CTATGAATGATTCTCGTCCTCCTCCTTTTTTTTCAAGAGGTTTGGTACAC
ATAGGAGAGAAACGCAGGGGGCGATGGGATTGGGATGGAGGAAAAGGAGT
TCGACAGGACTTTCAAAGGGTTTTGTCGGGGTAGGGCCAGGAGGCTCAGG
ATCAAGAAAAAGCGTACAGCGCAATGTCACACCCTTTCTTAAAAACGAAA
GAGCCACTGGTGAAATTGCCAGCCTTCCGACTGAAAAGGAAACGAAATGC
ATGTAGAGCGACGGAGAAAAGCGAACTTGGTCCACTTTTGGTGTCTTTTT
GGGGGGTGAATTTAACACCAGGCACCTCCCTAAGCATTCCCTCCTGGACG
GTTGCAACGCAAGTCACCACAAGAAAAAGAAGGAGAAAGGAGGGAACGGT
GGACGAGGAAGGGGCGTGGAGGAAGGGGGAGAAGGAGAGGGGGAGCGAAG
GGTCGGTCCCTGGTAAGGTGCACGGGCCTACTCCTCCTCCTCCTCGTCCA
TAGGAACCACCCGCCGGCGCCTCATTACCTTCCCTCCTCCATCATGGTCC
TCTATTTCTCTCGATTCTTTCCTTCTCCTTGCCGCGGCCGTTCTTCCTCT
TCCTTCGCGCGCGGATCCATTCGCTGCCCGGCGTCCTCCCTCCCTCCTAT
CCCCCTCCATTCCATCCCCCGCCCTCACCTCCTTCCCCTCTCCGT
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Coding sequence (CDS) from alignment at KK037256.1:289171..290215-

>rna9861 ID=rna9861|Name=rna9861|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at KK037256.1:289171..290215- (Nannochloropsis gaditana)
ATGTCACACCCTTTCTTAAAAACGAAAGAGCCACTGGTGAAATTGCCAGC
CTTCCGACTGAAAAGGAAACGAAATGCATGTAGAGCGACGGAGAAAAGCG
AACTTGGTCCACTTTTGGTGTCTTTTTGGGGGGTGAATTTAACACCAGGC
ACCTCCCTAAGCATTCCCTCCTGGACGGTTGCAACGCAAGTCACCACAAG
AAAAAGAAGGAGAAAGGAGGGAACGGTGGACGAGGAAGGGGCGTGGAGGA
AGGGGGAGAAGGAGAGGGGGAGCGAAGGGTCGGTCCCTGGTAAGGTGCAC
GGGCCTACTCCTCCTCCTCCTCGTCCATAG
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Synonyms
Publications