rna9859, rna9859 (mRNA) Nannochloropsis gaditana

Overview
Namerna9859
Unique Namerna9859
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length324
Alignment locationKK037256.1:281418..282882 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100496g1.5226.mrna
Orig protein idgnl|cribi|Naga_100496g1.5226
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:281418..282882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100496g1gene9571Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9859rna9859-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20845.1cds9828Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9859 ID=rna9859|Name=rna9859|organism=Nannochloropsis gaditana|type=mRNA|length=324bp
ATGACATACCCGTCCTTTCTCGCGAACTTGTGGAGTGGATTCTTTAGTGT
AGGGAGCAGTCAAGAAAAGCAGACTGGTGATTCTGTCGCAGATGTCCTGC
CCGTCGACTTCAAGGTAGACAGCTTGAACACGAGCATGACTACAACTCCA
CAAGGCAGGTTGCGTGGATCCTCCAACATGAAAGAAGGCAAGAGCCCATT
CCTTCGCGAAGCTGCTTCCCCGTGCCTGGATGAACAAGAGCGGATGGACG
TAGAATCAGGCAAAGACAACCGTCATACAACCCTCGTGAGGCAAGCTCGC
TTGATTGCTCATATGGAAGCGTAG
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protein sequence of rna9859

>rna9859-protein ID=rna9859-protein|Name=rna9859|organism=Nannochloropsis gaditana|type=polypeptide|length=450bp
MPGESPPAKAPRPLPQPRSNDTSIPSPPPTSPTPSPLIAASLSTEVELSQ
PDKHATYRPQSPPSPPVSPMPGLPRLFASRKRTSRPRIKRNSLNPFDDER
NEIQAMPHYRIDPDLLRKQTSCAPVRLLEVHSGDAHGSEDLPRLSSGVPN
PYVRYPRQNTARGIMAPSALPSSRTYPTTPLASLGRSQAGEGYTGPTPRP
CHEEAHPSHQDNRSPLGLPLEGNERMCSGDDAASRHLSRAQGAVPTGSGQ
GLAPLPSTRPPSTAIASSPSSPSLSYPTILTGRRISFRFQPASPSPTSSS
PSSSSSSLASGIPPSPTPDLTQQPASIPAMKCSASSALNPALLKSYDARQ
IGFEIARNYVRLYTQAERDVLNEQYEGLLKCHGRDPVVAWLHKEVMWPMR
PPSSFPAESSLLLASPPSPPFPALTLLSSRFPSSFLRSSSTCLSPPTHPT
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mRNA from alignment at KK037256.1:281418..282882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9859 ID=rna9859|Name=rna9859|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp|location=Sequence derived from alignment at KK037256.1:281418..282882+ (Nannochloropsis gaditana)
CTGCCTCATATTCTTCGCTTCATGAGCTTTTTAGACAATATGACGCACAA
TTCAGTCTTTTCAATTACCCTCAAATCATTTTTAGTTACAGGAAAACTGA
GTGGAACACATCATGCCTGGGGAATCGCCGCCAGCAAAAGCGCCGCGACC
ACTCCCACAACCACGCTCAAACGACACATccatcccttctccgcctccca
cttcgccaactccttctcctctaATAGCGGCTTCACTCTCTACAGAAGTA
GAACTTTCTCAACCTGACAAACATGCTACCTACCGCCCACAGTCaccgcc
atctccaccagTCTCACCCATGCCAGGTCTTCCACGACTTTTCGCAAGCA
GAAAAAGGACGAGCCGCCCGAGAATAAAGCGCAATAGCTTGAACCCTTTC
GATGACGAGCGAAATGAGATACAAGCAATGCCTCATTACAGAATAGACCC
TGACCTGCTGCGCAAGCAAACGTCGTGTGCGCCGGTGCGACTACTCGAGG
TCCACAGTGGAGATGCCCATGGAAGTGAAgatcttcctcgcctctcttcG
GGCGTCCCGAACCCTTATGTCCGATATCCACGCCAAAATACGGCTCGCGG
TATTATGGCCCcatctgccctcccttcctcccgtacATACCCGACTACAC
CCCTGGCTTCCCTCGGACGAAgccaggcgggagagggctaCACGGGACCA
ACCCCGCGGCCGTGCCATGAGGAGGCGCACCCCTCCCATCAAGACAACAG
ATCACCGCTAGGATTACCATTAGAAGGCAACGAACGCATGTGTAGCGGCG
ACGACGCAGCCAGCCGGCACCTTTCCCGTGCCCAAGGCGCCGTACCGACC
GGAAGCGGGCAGGGtcttgctcccctcccctcaactcgtcctccttcaac
cGCCATCGCATCATCCCcgtcatccccttccctATCCTACCCAACGATTT
TGACCGGCCGCCGCATCTCGTTCCGCTTCCaacccgcttccccttccccc
acctcctcctctccctcctcctcctcctcctcccttgcttccgGCATTCC
GCCGTCCCCGACGCCAGACCTCACCCAGCAgcccgcctccattcccgccA
TGAAGTGCTCTGCGTCTTCGGCTCTCAATCCCGCCTTGTTGAAATCCTAC
GACGCCCGCCAAATCGGATTCGAAATTGCGCGAAATTACGTCCGCCTGTA
CACGCAGGCGGAACGCGACGTCTTGAACGAGCAGTACGAAGGACTCTTGA
AATGCCACGGGCGGGACCCAGTCGTGGCTTGGCTGCACAAGGAGGTAATG
TGGCCgatgcgtcctccctcgtctttccctgCTGAGTCCTCCCTATTGCT
TGCcagccccccctctccccccttcccggcccTCACCCTGCTTTCTTCac
gtttcccttcctcctttctcaggTCGTCCTCGACGTGCTTGAGTCCTCCA
ACACACCCTACCTGA
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Coding sequence (CDS) from alignment at KK037256.1:281418..282882+

>rna9859 ID=rna9859|Name=rna9859|organism=Nannochloropsis gaditana|type=CDS|length=1353bp|location=Sequence derived from alignment at KK037256.1:281418..282882+ (Nannochloropsis gaditana)
ATGCCTGGGGAATCGCCGCCAGCAAAAGCGCCGCGACCACTCCCACAACC
ACGCTCAAACGACACATccatcccttctccgcctcccacttcgccaactc
cttctcctctaATAGCGGCTTCACTCTCTACAGAAGTAGAACTTTCTCAA
CCTGACAAACATGCTACCTACCGCCCACAGTCaccgccatctccaccagT
CTCACCCATGCCAGGTCTTCCACGACTTTTCGCAAGCAGAAAAAGGACGA
GCCGCCCGAGAATAAAGCGCAATAGCTTGAACCCTTTCGATGACGAGCGA
AATGAGATACAAGCAATGCCTCATTACAGAATAGACCCTGACCTGCTGCG
CAAGCAAACGTCGTGTGCGCCGGTGCGACTACTCGAGGTCCACAGTGGAG
ATGCCCATGGAAGTGAAgatcttcctcgcctctcttcGGGCGTCCCGAAC
CCTTATGTCCGATATCCACGCCAAAATACGGCTCGCGGTATTATGGCCCc
atctgccctcccttcctcccgtacATACCCGACTACACCCCTGGCTTCCC
TCGGACGAAgccaggcgggagagggctaCACGGGACCAACCCCGCGGCCG
TGCCATGAGGAGGCGCACCCCTCCCATCAAGACAACAGATCACCGCTAGG
ATTACCATTAGAAGGCAACGAACGCATGTGTAGCGGCGACGACGCAGCCA
GCCGGCACCTTTCCCGTGCCCAAGGCGCCGTACCGACCGGAAGCGGGCAG
GGtcttgctcccctcccctcaactcgtcctccttcaaccGCCATCGCATC
ATCCCcgtcatccccttccctATCCTACCCAACGATTTTGACCGGCCGCC
GCATCTCGTTCCGCTTCCaacccgcttccccttcccccacctcctcctct
ccctcctcctcctcctcctcccttgcttccgGCATTCCGCCGTCCCCGAC
GCCAGACCTCACCCAGCAgcccgcctccattcccgccATGAAGTGCTCTG
CGTCTTCGGCTCTCAATCCCGCCTTGTTGAAATCCTACGACGCCCGCCAA
ATCGGATTCGAAATTGCGCGAAATTACGTCCGCCTGTACACGCAGGCGGA
ACGCGACGTCTTGAACGAGCAGTACGAAGGACTCTTGAAATGCCACGGGC
GGGACCCAGTCGTGGCTTGGCTGCACAAGGAGGTAATGTGGCCgatgcgt
cctccctcgtctttccctgCTGAGTCCTCCCTATTGCTTGCcagcccccc
ctctccccccttcccggcccTCACCCTGCTTTCTTCacgtttcccttcct
cctttctcaggTCGTCCTCGACGTGCTTGAGTCCTCCAACACACCCTACC
TGA
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Synonyms
Publications