rna9849, rna9849 (mRNA) Nannochloropsis gaditana

Overview
Namerna9849
Unique Namerna9849
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length282
Alignment locationKK037256.1:257387..259734 +

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF23
Orig transcript idgnl|cribi|Naga_100164g13.9743.mrna
Orig protein idgnl|cribi|Naga_100164g13.9743
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:257387..259734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100164g13gene9562Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9849rna9849-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20863.1cds9818Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9849 ID=rna9849|Name=rna9849|organism=Nannochloropsis gaditana|type=mRNA|length=282bp
ATGGCCAAAGCGTCCCTCCCATTCCAACGGTCTACGTGCTGCAACCCTTA
TCGACGCATCGCAGTACTGTCCTTCGCCATTCTCGGCCTGACCCTGGTTT
CATTGTATTTTCACATGCGCTTTGACGTGACCTCGTTCGAACTCATAGCC
TTCAACCTGACAGAGGAGGCTCATTCCAGCAATGCAAACAACCTCGTGAC
CATCACGACCATCACCAATAGCAGCAGTATATCCCTACTGACACAACAGC
ACCAGCACTTCATGCAAGCCTCGCCCCTATGA
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protein sequence of rna9849

>rna9849-protein ID=rna9849-protein|Name=rna9849|organism=Nannochloropsis gaditana|type=polypeptide|length=600bp
MAKTSLPFQQPTCCNFYRRIAALSFASLGLTLVSLCLSPRFDVTSFELIA
LNLTEEAPSSNASNLVTITTITNSSSISPTDTTAPALHASLAPMIMPAWT
DNHRFYVLGGILTRDQIDERLYMDVMVAGRRMFLQVTDSYGVRDLDEDWS
LGKSHNVADPDEVVALGGKVLCHVSGEGNDVEEEAVLVPTRSPLSPLASG
LVHIIRCPVADAFPLDAGDVDVTVRVVFGGNQTQDSIKYGWEWPRSNGTD
AGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASELDPWQAQPDKLHLCV
AGLYTNFTCPLLDQTLEFVEYHTQQGVAHIHLGVDYPVGSESWKAVLRVL
RPYIDERKVSVMSTQSVRGPGWIGTDQFRLYFYASCLAYTKGLATWVGIW
DNDEYLVPRDEGASTIVQSLDTVLREADKTAKDVCFMSFTSFGFMEVKKL
RTIGNRTWAGQMFGHWRQAKSDDNWTKSILSNRNAYFTGAHYPGACRDVG
DRRWGDKRKDIWRINASVLAMHHYRGKVSSVKKPKSNVAEDDEYGMRLFP
AVLDGLRSRKADEIVERECGFRPSMAVEYVEGPEEQGRVAVVGVPRKRNE
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mRNA from alignment at KK037256.1:257387..259734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9849 ID=rna9849|Name=rna9849|organism=Nannochloropsis gaditana|type=mRNA|length=2348bp|location=Sequence derived from alignment at KK037256.1:257387..259734+ (Nannochloropsis gaditana)
AAACGTGATCATTTTCAGTTATACACACTACGGACATTGTTTCAAGCATT
CCTGTCATACGAGACCTCGATCATCACTAAGTAAGCAGGACCTACGGGCC
TCTGCAGTGTCAGATGGCCAAAacgtccctcccattccaacAGCCTACGT
GCTGCAACTTTTATCGACGCATCGCAGCATTGTCCTTCGCCAGTCTCGGC
CTGACCCTGGTTTCATTGTGTCTTTCCCCGCGCTTCGACGTGACCTCGTT
CGAACTCATAGCCTTAAACCTGACCGAGGAGGCTCCTTCCAGCAATGCAA
GCAACCTCGTGACCATCACGACCATCACCAATAGCAGCAGTATATCCCCT
ACTGACacaacagcaccagcacttCATGCAAGCCTCGCCCCTATGATCAT
GCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGAGGGATCTTGA
CACGGGACCAGATCGATGAGCGTTTGTACatggacgtgatggtggcgggt
cGGCGCATGTTCCTGCAGGTAACAGATAGCTACGGTGTGCGTGACCTCGA
CGAGGATTGGTCATTGGGGAAGTCGCACAACGTGGCAGATCCCGACGAGG
TCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCagcggagaggggaac
gacgtggaggaagaggccgtgcttgtcccGACAAGGAGCCCTTTAAGCCC
CCTCGCAAGCGGACTCGTCCATATCATTCGTTGCCCTGTGGCGGATGCCT
TTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGC
GGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGGCCCCGAAG
CAACGGCACGGACGCTGGTCGAgggcagggcaagggcggcgaAGAGCGGT
TCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACTTTAGCTAC
CTACCAGAGGCTTCCGAACTGGATCCATGGCAAGCTCAGCCCGACAAACT
GCACCTCTGTGTGGCGGGACTGTACACAAACTTCACCTGTCCGCTGCTGG
ATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGGTGGCGCAC
ATCCACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGT
GCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGT
CGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAGG
CTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTG
GGTGGGCATCTGGGACAACGACGAGTACCTGGTACCACGTGACGAGGGCG
CAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGGCTGACAAG
ACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGCTTCATGGA
GGTCAAAAAGCTCAGGACCATCGGCAACCGGACATGGGCGGGACAGATGT
TTGGGCACTGGCGGCAAGCAAAGAGTGACGACAACTGGACAAAGTCGATC
CTGTCCAACCGAAACGCCTATTTTACAGGAGCCCACTACCCGGGAGCTTG
CAGGGACGTAGGGGATAGACGATGGGGCGATAAGCGCAAAGATATCTGGC
GTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAGGGAAGGTGTCC
TCGGTAAAGAAGCCGAAGTCCAACGtcgcggaggacgacgagtaCGGCAT
GCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACG
AGAtcgtggagagggagtgcggCTTCCGTCCGTCCATGGCTGTCGAGTAT
GTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTGGGAGTGCcaag
gaagagaaatgaGTAGGAGCAACGTTTGACTCATGTCCTGAACAGGGATG
TAGGGTTAGGGAGCGAGAAGCAAGGTGCGCGTCGCAAGATGTGTGTCCTG
TGCAGTGGAGGATGATTGTGCGACAGGCAAGAGATGCATACTTGTACAAG
CGTGGTGGTCAGGGGCTTGACAGGGGCTAGTGGTACAGGAAAGGAATAAG
AATATGCTGTGCAGCGCCAAGCCCGTCCATGAATGTCTGACGGTGATTCG
ACATACTGGGCCTTCTTTGTGTACGTTTAATGCTATGTCTCGTGTGCTTC
ACTGATCAGTTGCAGGTCGAGTGCTCATCTGCTAAAAGGATCACACATCT
ACCAGCGCGAGATCCTTTCGAGGCAGCTACATGCAGTTGATACATGGCGT
GGTCAAGCTCTGCAAGACACTCAGCCTGCAAGAGTGCTGGATCAATGA
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Coding sequence (CDS) from alignment at KK037256.1:257387..259734+

>rna9849 ID=rna9849|Name=rna9849|organism=Nannochloropsis gaditana|type=CDS|length=1803bp|location=Sequence derived from alignment at KK037256.1:257387..259734+ (Nannochloropsis gaditana)
ATGGCCAAAacgtccctcccattccaacAGCCTACGTGCTGCAACTTTTA
TCGACGCATCGCAGCATTGTCCTTCGCCAGTCTCGGCCTGACCCTGGTTT
CATTGTGTCTTTCCCCGCGCTTCGACGTGACCTCGTTCGAACTCATAGCC
TTAAACCTGACCGAGGAGGCTCCTTCCAGCAATGCAAGCAACCTCGTGAC
CATCACGACCATCACCAATAGCAGCAGTATATCCCCTACTGACacaacag
caccagcacttCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACG
GACAACCATCGCTTCTATGTGTTGGGAGGGATCTTGACACGGGACCAGAT
CGATGAGCGTTTGTACatggacgtgatggtggcgggtcGGCGCATGTTCC
TGCAGGTAACAGATAGCTACGGTGTGCGTGACCTCGACGAGGATTGGTCA
TTGGGGAAGTCGCACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGG
TGGGAAAGTACTGTGTCACGTCagcggagaggggaacgacgtggaggaag
aggccgtgcttgtcccGACAAGGAGCCCTTTAAGCCCCCTCGCAAGCGGA
CTCGTCCATATCATTCGTTGCCCTGTGGCGGATGCCTTTCCGCTGGACGC
TGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACAC
AGGACTCCATCAAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGAC
GCTGGTCGAgggcagggcaagggcggcgaAGAGCGGTTCCGAGTCGTCGT
GCCACGCGCGACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTT
CCGAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTG
GCGGGACTGTACACAAACTTCACCTGTCCGCTGCTGGATCAGACGTTGGA
GTTCGTCGAGTACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAG
TCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTG
CGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGT
GCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAGGCTCTACTTCTACG
CCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGG
GACAACGACGAGTACCTGGTACCACGTGACGAGGGCGCAAGCACGATTGT
GCAGTCGCTTGACACCGTGCTGAGAGAGGCTGACAAGACAGCGAAGGACG
TCTGTTTCATGTCTTTCACGTCATTTGGCTTCATGGAGGTCAAAAAGCTC
AGGACCATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCG
GCAAGCAAAGAGTGACGACAACTGGACAAAGTCGATCCTGTCCAACCGAA
ACGCCTATTTTACAGGAGCCCACTACCCGGGAGCTTGCAGGGACGTAGGG
GATAGACGATGGGGCGATAAGCGCAAAGATATCTGGCGTATCAATGCAAG
CGTACTGGCCATGCATCACTATCGAGGGAAGGTGTCCTCGGTAAAGAAGC
CGAAGTCCAACGtcgcggaggacgacgagtaCGGCATGCGTCTTTTCCCC
GCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAtcgtggagag
ggagtgcggCTTCCGTCCGTCCATGGCTGTCGAGTATGTCGAGGGTCCTG
AGGAGCAGGGACGAGTAGCCGTGGTGGGAGTGCcaaggaagagaaatgaG
TAG
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Synonyms
Publications