rna9847, rna9847 (mRNA) Nannochloropsis gaditana

Overview
Namerna9847
Unique Namerna9847
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1527
Alignment locationKK037256.1:254549..255979 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF23
Orig transcript idgnl|cribi|Naga_100164g11.9737.mrna
Orig protein idgnl|cribi|Naga_100164g11.9737
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:254549..255979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100164g11gene9560Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20857.1cds9816Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9847rna9847-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9847 ID=rna9847|Name=rna9847|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp
ATGCTCATGCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGTGG
TATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACATGATGG
TGGCGGGTCGACGCATGTTCCTGCAGGTTGAAGGTAATTTCGGTGTGCGT
GACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAGATCC
CGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGGAG
AGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCACT
GTCGATCCTCACGTGAACGGACTCGTCCATATCATCCGTTGTCCTGTAGC
GGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCG
TATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGG
CCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCGGCGA
AGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACT
TTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCC
GACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTTACCTGTCC
GCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGG
TGGCGCACATCTACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGG
AAGGCTGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTC
CGTTACGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGAAC
ACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTG
GCTACGTGGGTAGGCATCTGGGACATCGACGAGTACCTGGTGCCACGTGA
CGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGG
CTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGC
TTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCGGG
ACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACATATGGACGA
AGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTACCCG
GGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCACGCGC
AGACCTCTGGCGTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAG
GGAAGGTGTCCTCGGTGAAACAGCCGAAGTCCAACGCCGCGGAAGACGAC
GAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAG
GAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCCATGG
CTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTG
GGAGTGCCAAGGAAGAGAAATGAGTAG
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protein sequence of rna9847

>rna9847-protein ID=rna9847-protein|Name=rna9847|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MVAGRRMFLEVKENFGVRDLDEDWSWGKSHNVADPDEVVALGGKVLCHVS
GEGNDVEEEAVLVPMRSPFSPYASGLVHIIRCPVADAFPLDAGDVDVTVR
VVFGGNQTQDSIKYGWEWPRSNGTDAGRGQGKGGEERFRVVVPRATRHAG
YFSYLPEASELDPWQAQPDKLHLCVAGLYTNFTCPLLDQTLEFVEYHTQQ
GVAHIHLGVDYPVGSESWKAVLRVLRPYIDERKVSVMSTQSVRGPGWIGT
EHFKLYFYASCLAYTKGVATWVGIWDIDEYLVPRDEGASTIVQSLDTVLR
GADKTAKDVCFMSFTSFGFMEVKELRTIGNRTWAGQMFGHWRQAKNDDIW
TKSILSNRNAYVAGFHYPGACRDVGDRRWGENPRADLWRINASVLAMHHY
RGKVSSVKKPKSNVAEDDEYGMRLFPAILDGLRSRKADEIVERECGFRPS
MAVEYVEGPEEQGRVAVVGVPRKRNE
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mRNA from alignment at KK037256.1:254549..255979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9847 ID=rna9847|Name=rna9847|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp|location=Sequence derived from alignment at KK037256.1:254549..255979- (Nannochloropsis gaditana)
ATGGTGGCGGGTCGGCGCATGTTCCTGGAGGTAAAAGAGAACTTCGGTGT
GCGTGACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAG
ATCCCGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGC
GGAGAGGGGAACGACGTAGAGGAAGAGGCCGTGCTTGTCCCTATGAGAAG
CCCTTTCAGCCCTTACGCAAGCGGACTCGTCCATATCATTCGTTGCCCTG
TGGCGGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGG
GTCGTATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGA
GTGGCCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCG
GCGAAGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGC
TACTTTAGCTACCTACCAGAGGCTTCCGAACTGGATCCATGGCAAGCTCA
GCCCGACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTCACCT
GTCCGCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAA
GGGGTGGCGCACATCCACCTGGGGGTCGACTATCCTGTAGGATCGGAGTC
GTGGAAGGCCGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGG
TGTCCGTTATGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACG
GAACACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGG
CGTGGCTACGTGGGTGGGCATCTGGGACATCGACGAGTACCTGGTGCCAC
GTGACGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGTTGAGA
GGGGCTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATT
TGGCTTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGG
CGGGACAGATGTTTGGGCACTGGCGGCAAGCAAAGAATGACGACATATGG
ACGAAGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTA
CCCGGGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCAC
GCGCAGACCTCTGGCGTATCAATGCAAGCGTACTAGCCATGCATCACTAT
CGAGGGAAGGTGTCCTCGGTAAAGAAGCCGAAGTCCAACGTCGCGGAAGA
CGACGAGTACGGCATGCGTCTTTTCCCCGCGATCTTGGACGGCCTACGGT
CAAGGAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCC
ATGGCTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGT
GGTGGGAGTGCCAAGGAAGAGAAATGAGTAG
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Coding sequence (CDS) from alignment at KK037256.1:254549..255979-

>rna9847 ID=rna9847|Name=rna9847|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at KK037256.1:254549..255979- (Nannochloropsis gaditana)
ATGGTGGCGGGTCGGCGCATGTTCCTGGAGGTAAAAGAGAACTTCGGTGT
GCGTGACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAG
ATCCCGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGC
GGAGAGGGGAACGACGTAGAGGAAGAGGCCGTGCTTGTCCCTATGAGAAG
CCCTTTCAGCCCTTACGCAAGCGGACTCGTCCATATCATTCGTTGCCCTG
TGGCGGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGG
GTCGTATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGA
GTGGCCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCG
GCGAAGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGC
TACTTTAGCTACCTACCAGAGGCTTCCGAACTGGATCCATGGCAAGCTCA
GCCCGACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTCACCT
GTCCGCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAA
GGGGTGGCGCACATCCACCTGGGGGTCGACTATCCTGTAGGATCGGAGTC
GTGGAAGGCCGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGG
TGTCCGTTATGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACG
GAACACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGG
CGTGGCTACGTGGGTGGGCATCTGGGACATCGACGAGTACCTGGTGCCAC
GTGACGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGTTGAGA
GGGGCTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATT
TGGCTTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGG
CGGGACAGATGTTTGGGCACTGGCGGCAAGCAAAGAATGACGACATATGG
ACGAAGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTA
CCCGGGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCAC
GCGCAGACCTCTGGCGTATCAATGCAAGCGTACTAGCCATGCATCACTAT
CGAGGGAAGGTGTCCTCGGTAAAGAAGCCGAAGTCCAACGTCGCGGAAGA
CGACGAGTACGGCATGCGTCTTTTCCCCGCGATCTTGGACGGCCTACGGT
CAAGGAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCC
ATGGCTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGT
GGTGGGAGTGCCAAGGAAGAGAAATGAGTAG
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Synonyms
Publications