rna9846, rna9846 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9846
Unique Name	rna9846
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2366
Alignment location	KK037256.1:251250..252776 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF23
Orig transcript id	gnl\|cribi\|Naga_100164g10.9739.mrna
Orig protein id	gnl\|cribi\|Naga_100164g10.9739
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:251250..252776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100164g10	gene9559	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20859.1	cds9815	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9846	rna9846-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:251250..252776-
coding sequence from alignment at KK037256.1:251250..252776-

mRNA sequence

>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=mRNA|length=2366bp
TGAAGTATGCAACAAATGCTTCCAAAAAAGATTGACGAGGAATGTCCAAA
TTCTTCTTCATTTTTACGTATTCCTGTTCTCTTCTCCATTTATTCTTTCT
GCTCTCAAACCTACTAGGGATAGGACACATAGGGGCATCTCACACTCCCT
TGCCACAGCCTTGGAACCGTAACTACTAGCCGCAACAGATGAAGAGATGG
CATTAAAGCACTGGCTTAGAGCAATGTTGAGCTTTTCTGTCGCGTCATAT
GCCTGGGTTGTCTGGCATCATGTACCGTCCGAAGAGACAGCCTATCCAGT
CCCTCGATTTAGTGCACTTTCACAAACACCGGGCCCTGTGAACACTACTT
CCATAAGGATTATGGCTTTGAGGTCTGCGCCCACATTCATACATATTCCT
TAGACTGGAGGGACATCAATCGAAACAGAATTGGCCATCCACGGTATACA
TGTTGGAAGGTGCGCATTTTAAAGGAAGGAGGATGGAGGCCAGCGCACAT
ACAAAATTAAGCAAGGGCGTTGCAATGGGTGGCACTCATTACCACTTGAA
CACGTCAACAATAGCATCACTGTCGTGAGGGATCCAATGGATCGATTACT
TAGCGAATTTTGTCGGGAACGCGCAAGGGAGATATATCGAGCCGAGCTTT
CTTGTGAGGGACTATCGAGTTAGATTTTGGACATTTTATCGAATGAAGTG
ACGGACAACAACCACATATATGATTGTCACCTACTACCCCAGTGGGAATA
TGCAAAATGGGCTGATAGTATCGTCCCGTTTTGTGCATTAGGAACACCGC
ATGGAAATAAATTGCTAGCTGAGCACTTCGAAGTTGCGAACTTTACCCTG
CGGGAGGAGAATCACGTTCATATGCGTGATGGAGAGTGTAAAACTTTTAC
CAACTCTGTACAAAGGGCTTTTAACGTCACCAACTGTATTTCATCGACGG
CGTATGCCTTGTTCCAAGACATTTATCGGCTTGATTACAAGTATCTTGGG
AAACATTTCACGTGTGCATGAAGAACTGCACAACACAACAAAAAACGTTT
CTCTGGGTAACAGAATGACATCCATCTAACCGAAGCCTAGGCGCCTTTGT
CCCTCATTTATTGTAAGTCTTACTAACAGCTCTACTATTATTTCATGCCT
GCTGTCAGTTCGCAGGTATAAGGTACACCTTGGCATTGCGATGAGGGGCA
AGCAACATATTTAATGCACAAAATATTTCAACATCGACTGAACAAGGTAT
CAAAAATATGGTACGACATGACAAGAATAGCGTTTGCGAGGAGAGAACGC
TGAACAAGAATTTTGTTTCTGAAGATGCATAGGTTTTCAGGGCTTTTGTG
AGGACACCTTTTCATATATTGTACTTGTTTGTGTGGACACTTTTCCATAT
ATTCTACTCCTTCATCCTCCATACGATCTATTGGCGGAGACTTCGCGTTG
CTCCTGGCTTGCGAATTACACAGTGGGGACGAAAAATACTGTCGAAGGTT
TACCTCGGGAGATCCTTCATTGAGGGTTTTCGAATGGCACACATTTATCC
TTATATTGTATGGAAAGTCATGCCCCTCTACATAACCCACACACCCTCAA
GCTTGACATGCGCATTCTCAGCCTTCGTCTTTTCCGGTATTGCCTGGGGT
TATGCCTTCATCCTTCTTTGACTCCTTTCTTCCTCAAGTGTTCCTACATT
CGTCACCCACTTGTGCCACATCATCTCTACTTCTTACGGTCCTTTCCCCA
AATATACGGAAAGCCCTACCTATCCTGGGTTTGGGTGAATACCTACAATG
TCGACTGTACTGTTGAGGGCTTCAGGCTGGCGAGTGGGTTGTCATGCCTG
TACGGAGTGCTGCTAAGCAAAAAGCGCAGCGTAAAAACGTGCTAGAGGCT
CGATTGTTTGAACTGAGCATTGTGGGAGTTGCTAAGGGCAATTTCAGCCA
TAAGAGGAAAGGATGAGGGCCAAGAACGAGGCACGGAAGCCCATGTTCAC
CTGTGTCCATTGGGGAAATCCCATTCTTGCGTGTGTCATTCATGCCTTCC
GATTACGTTGCAGTGAAATAAAACTAGTCCATGTTGATGAAAATTGGTGC
CAGTCCAAGGCTTAACCGGCTCCTTTTTAGTGATCTACAGAGAAGTGTTT
GTATCCCAGATACTTGCGACATTCCTGAGTACGCAAGCAGACTCTCGTAA
TTACTTTGTGGGAGGCGAGACGCTTTAAATAATCGAAGAATGCTTCCTAT
TTTCAGATTGGATCTGTGCTGTGACACACACTTACTTTGATCATAGTTGT
CCTCGATATTCCTGTTATGAAATAGACAGAGAGGGATAAAGATATGACTT
GAAAGTACACATACGC

protein sequence of rna9846

>rna9846-protein ID=rna9846-protein|Name=rna9846|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MLMPAWTDNHRFYVLGGILTRDQIDERLCMDMMVAGRRMFLQVEGNFGVR
DLDEDWSWGKSHNVADPDEVVALGGKVLCHVSGEGNDVEEEAVLVPTRST
VDPHVNGLVHIIRCPVADAFPLDAGDVDVTVRVVFGGNQTQDSIKYGWEW
PRSNGTDAGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASKLDPWQAQP
DKLHLCVAGLYTNFTCPLLDQTLEFVEYHTQQGVAHIYLGVDYPVGSESW
KAVLRVLRPYIDERKVSVTSTQSVRGPGWIGTEHFKLYFYASCLAYTKGL
ATWVGIWDIDEYLVPRDEGASTIVQSLDTVLREADKTAKDVCFMSFTSFG
FMEVKELRTIGNRTWAGQMFGHWRQAKSDDIWTKSILSNRNAYVAGFHYP
GACRDVGDRRWGENPRADLWRINASVLAMHHYRGKVSSVKQPKSNAAEDD
EYGMRLFPAVLDGLRSRKADEIVERECGFRPSMAVEYVEGPEEQGRVAVV
GVPRKRNE

mRNA from alignment at KK037256.1:251250..252776-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at KK037256.1:251250..252776- (Nannochloropsis gaditana)
ATGCTCATGCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGTGG
TATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACATGATGG
TGGCGGGTCGACGCATGTTCCTGCAGGTTGAAGGTAATTTCGGTGTGCGT
GACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAGATCC
CGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGGAG
AGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCACT
GTCGATCCTCACGTGAACGGACTCGTCCATATCATCCGTTGTCCTGTAGC
GGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCG
TATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGG
CCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCGGCGA
AGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACT
TTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCC
GACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTTACCTGTCC
GCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGG
TGGCGCACATCTACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGG
AAGGCTGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTC
CGTTACGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGAAC
ACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTG
GCTACGTGGGTAGGCATCTGGGACATCGACGAGTACCTGGTGCCACGTGA
CGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGG
CTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGC
TTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCGGG
ACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACATATGGACGA
AGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTACCCG
GGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCACGCGC
AGACCTCTGGCGTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAG
GGAAGGTGTCCTCGGTGAAACAGCCGAAGTCCAACGCCGCGGAAGACGAC
GAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAG
GAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCCATGG
CTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTG
GGAGTGCCAAGGAAGAGAAATGAGTAG

Coding sequence (CDS) from alignment at KK037256.1:251250..252776-

>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at KK037256.1:251250..252776- (Nannochloropsis gaditana)
ATGCTCATGCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGTGG
TATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACATGATGG
TGGCGGGTCGACGCATGTTCCTGCAGGTTGAAGGTAATTTCGGTGTGCGT
GACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAGATCC
CGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGGAG
AGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCACT
GTCGATCCTCACGTGAACGGACTCGTCCATATCATCCGTTGTCCTGTAGC
GGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCG
TATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGG
CCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCGGCGA
AGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACT
TTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCC
GACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTTACCTGTCC
GCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGG
TGGCGCACATCTACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGG
AAGGCTGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTC
CGTTACGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGAAC
ACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTG
GCTACGTGGGTAGGCATCTGGGACATCGACGAGTACCTGGTGCCACGTGA
CGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGG
CTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGC
TTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCGGG
ACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACATATGGACGA
AGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTACCCG
GGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCACGCGC
AGACCTCTGGCGTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAG
GGAAGGTGTCCTCGGTGAAACAGCCGAAGTCCAACGCCGCGGAAGACGAC
GAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAG
GAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCCATGG
CTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTG
GGAGTGCCAAGGAAGAGAAATGAGTAG

Synonyms

Publications