rna9844, rna9844 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9844
Unique Name	rna9844
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2539
Alignment location	KK037256.1:245554..247458 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF23
Orig transcript id	gnl\|cribi\|Naga_100164g6.9740.mrna
Orig protein id	gnl\|cribi\|Naga_100164g6.9740
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:245554..247458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100164g6	gene9557	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9844	rna9844-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20860.1	cds9813	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:245554..247458+
coding sequence from alignment at KK037256.1:245554..247458+

mRNA sequence

>rna9844 ID=rna9844|Name=rna9844|organism=Nannochloropsis gaditana|type=mRNA|length=2539bp
GAGATAATACACCAGTCATCCACCCACAAATTGCCTCGGAAGCGTGTACG
AAAATCAAATGACCGTTTCTTGATCATCCCGAGTTGGCGAGGGCGCACTT
CAAATATGACCGTAATAAAACGGGCGTACAATTAATACACGGTGATAGAC
CTGTCTGTTTCTAAAGTCATCCCAAATAGCTAACTACATTTGACCAGTAG
CAGTGTCTCCTATCATCCTTTGTACAAATATATGACCATGACTTATCACA
TTCGCATTGCTCTCTATGACGCAAATGACTGCCCTCATAATCTTAGTGTA
CGCGCGCACACCCAACACAGAATGCAAACGTGATCATTATCAGTTATACA
CAGTTAAGATATTGTTTCAACCTATCTTTTCATACCAAGGCTTCGATTAT
CACTAAGATAGAAAGACCCTACAAACCTCTGCAGTATAAGATGGCCAAAA
CGTGCCTCCCTTTCCGACGGTCTACGTGCTGCAAACCTTATCGACGCATC
GCAGTACTGTCCTTCGCCATTCTCGGCCTGACCCTGGTTTCATTGTATTT
TCACATGCGCTTTGACGTGACCTCGTTCGAACTCATAGCCTTCAACCTGA
CAGAGGAGGCTCATTCCAGCAATGCAAGCAACCTCGTGACCATCACGACC
ATCACCAATAGCAGCAGTATATCCCCTACTGACACAACAGCACCAGCACT
TCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACGGACAACCATC
GCTTCTATGTGTTGGGTGGTATCTTGACACGGGACCAGATCGATGAGCGT
TTGTACATGGACGTGATGGTGGCGGGTCGGCGCATGTTCCTGCAAGTAAC
AGATACTTACGGTGTGAGCGACCTCGACGAGGACTGGTCATGGGGGAAGT
CACACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGGTGGGAAAGTA
CTGTGTCACGTCAGCGGAGAGGGGAACGACGTAGAGGAAGATGCCGTGCT
TGTCCCGACAAGGAGCACTGTCGGCCCTTACGCAAGCGCACTCGTCCATA
TCATTCGTTGTCCTGTGGCGGATGCCTTTCCGCTGGACGCTGGAGACGTG
GATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACACAGGACTCCAT
CGAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGACGCTGGTCGAG
GGCAGGGCAAGGGCGGCGAAGAGCGGTTCCGAGTCGTCGTGCCACGCGCG
ACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTTCAAAACTGGA
TCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTGGCGGGACTGT
ACACAAACTTCACCTGTCCGCTGCTGGATCAGACGTTGGAGTTTGTCGAG
TACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAGTCGACTATCC
TGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTGCGGCCTTACA
TAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGTGCGAGGCCCT
GGATGGATCGGGACGGACCAGTTCAAGCTCTACTTCTACGCCTCTTGTCT
CGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGGGACATCGACG
AGTACCTGGTGCCACGTGACGAGGGCGCAAGCACGATTGTGCAGTCGCTT
GACACCGTGTTGAGAGGGGCTGACAAGACAGCGAAGGACGTCTGTTTCAT
GTCTTTCACGTCATTTGGCTTCATGGAGGTCAAAGAGCTCAGGACCATCG
GCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCGGCAAGCAAAG
AGTGACGACGATTGGACAAAGTCGATCCTGTCCAACCGAAATGCCTATGT
TGCTGGTTTCCACTACCCGGGAGCTTGCAGGGACCTAGGGGATAGACGAT
GGGGCGATAAGCGCAAAGATATCTGGCGTATCAATGCAAGCGTACTAGCC
ATGCATCACTATCGAGAGAAGGTGTCCTCGGTAAAGAAGCCGAAGTCCAA
CGTCGCGGAGGACGACGAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGG
ACGGCCTACGGTCAAGGAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGC
TTCCGTCCGTCCATGGCTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGG
ACGAGTAGCCGTGGTGGGAGTGCCAAGGAAGGGAGATGAGTAGGAGCAAC
GTTTGACTCATGTCCTGAGCAGAGATGTAGGGTTAGGGAGCAAGAAGCAA
GCTATGCGTCGCAAGATGTGTGTCCTATGCAGTGGAGGATGATTGTGCGA
CAGGCGAGAGATGCATACATGTACAAGTGTGTTGGTCAGGGGCTTGAGAG
GGGTTTGTGGTACATGAAAGGAACAAGAATATGCTTTGCAGCGCCAAGCC
CGCTCATGAATGTTCTACGATTACTCGGCATACTTGGACTCATTGGTGTT
CGTTTGATGCTATGTCTCGCGTGTCTCACTCATTGGTTG

protein sequence of rna9844

>rna9844-protein ID=rna9844-protein|Name=rna9844|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MATKTFHFQRSTCCNPYRRIAVLSLAILGLTLVSFYFHIRFDVTSFKLLA
FNLIDETPSSNANNLVTITTTTNSSSISPTHTTAPALHASLAPMIMPAWT
DNHCFYVLGGILTRDQIDEHLCMDVMVAGRRMFLEVKENFGVRDLNEDWS
LGKSHNVADPDEVVALGGKVLCHVSGEGNDVEEEAVLVPMRSPFSPYASG
LVHIIRCPVADAFPLDAGDVDVTVRVVFGGNQTQDSIKYGWEWPRSNGTD
AGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASKLDPWQAQPDKLHLCV
AGLYTNFTCPLLDQTLEFVEYHTQQGVAHIHLGVDYPVGSESWKAVLRVL
RPYIDERKVSVMSTQSVRGPGWIGTDQFKLYFYASCLAYTKGLATWVGIW
DIDEYLVPRDEGASTIVQSLDTVLREADKTAKDVCFMSFTSFGFMEVKEL
RTIGNRTWAGQMFGHWRQAKSDDNWTKSILSNRNAYFTGSHYPGACRDVG
GRRWGENPRADLWRINASVLAMHHYRGKVSSVKKPKSNVAEDDEYGMRLF
PAVLDGLRSRKADEIVERECGFRPSMAVEDVGLGSKKQAMRRKMCVLCSG
G

mRNA from alignment at KK037256.1:245554..247458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9844 ID=rna9844|Name=rna9844|organism=Nannochloropsis gaditana|type=mRNA|length=1905bp|location=Sequence derived from alignment at KK037256.1:245554..247458+ (Nannochloropsis gaditana)
ATGGCCACAAAGACTTTCCATTTCCAACGCTCTACGTGCTGCAACCCTTA
TCGACGCATCGCAGTATTGTCCCTCGCCATTCTCGGCCTGACCCTGGTGT
CATTCTATTTTCACATACGCTTCGACGTGACCTCGTTCAAACTCCTAGCC
TTCAACCTGATAGATGAGACTCCTTCCAGCAATGCAAACAACCTCGTGAC
CATCACGACCACCACCAATAGCAGCAGTATATCCCCTACTCACacaacag
caccagcacttCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACG
GACAACCATTGCTTCTATGTGTTGGGGGGGATCTTGACACGGGACCAGAT
CGATGAGCATTTGTGCatggacgtgatggtggcgggtcGGCGCATGTTCC
TGGAGGTAAAAGAGAACTTCGGTGTGCGTGACCTCAACGAGGATTGGTCA
TTGGGGAAGTCGCACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGG
TGGGAAAGTACTGTGTCACGTCagcggagaggggaacgacgtagaggaag
aggccgtgcttgtcccTATGAGAAGCCCTTTCAGCCCTTACGCAAGCGGA
CTCGTCCATATCATTCGTTGCCCTGTGGCGGATGCCTTTCCGCTGGACGC
TGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACAC
AGGACTCCATCAAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGAC
GCTGGTCGAgggcagggcaagggcggcgaAGAGCGGTTTCGAGTCGTCGT
GCCACGTGCGACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTT
CCAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTG
GCGGGACTGTACACAAACTTCACTTGTCCGCTGCTCGATCAGACGTTGGA
GTTTGTCGAGTACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAG
TCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTG
CGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGT
GCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAAGCTCTACTTCTACG
CCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGG
GACATCGACGAGTACCTGGTGCCACGTGACGAGGGCGCAAGCACGATTGT
GCAGTCGCTTGACACCGTGCTGAGAGAGGCTGACAAGACAGCGAAGGACG
TCTGTTTCATGTCTTTCACGTCATTTGGCTTCAtggaggtcaaggagctc
AGGACCATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCG
GCAAGCAAAGAGTGACGACAACTGGACAAAGTCGATCCTGTCCAACCGAA
ACGCCTACTTCACTGGCTCCCACTACCCGGGAGCTTGCAGGGACGTAGGG
GGTAGACGATGGGGCGAGAATCCACGCGCAGACCTCTGGCGTATCAATGC
AAGCGTACTGGCCATGCATCACTATCGAGGGAAGGTGTCCTCGGTAAAGA
AGCCGAAGTCCAACGtcgcggaggacgacgagtaCGGCATGCGTCTTTTC
CCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAtcgtgga
gagggagtgcggCTTCCGCCCGTCCATGGCTGTCGAGTATGTCGAGGGTC
CTGAGGAGCAGGGACGAGTAGCCGTGGTGGGAGtgccaaggaagggagat
gagTAGGAGCAACGTTTGACTCATGTCCTGAGCAGAGATGTAGGGTTAGG
GAGCAAGAAGCAAGCTATGCGTCGCAAGATGTGTGTCCTATGCAGTGGAG
GATGA

Coding sequence (CDS) from alignment at KK037256.1:245554..247458+

>rna9844 ID=rna9844|Name=rna9844|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at KK037256.1:245554..247458+ (Nannochloropsis gaditana)
ATGGCCACAAAGACTTTCCATTTCCAACGCTCTACGTGCTGCAACCCTTA
TCGACGCATCGCAGTATTGTCCCTCGCCATTCTCGGCCTGACCCTGGTGT
CATTCTATTTTCACATACGCTTCGACGTGACCTCGTTCAAACTCCTAGCC
TTCAACCTGATAGATGAGACTCCTTCCAGCAATGCAAACAACCTCGTGAC
CATCACGACCACCACCAATAGCAGCAGTATATCCCCTACTCACacaacag
caccagcacttCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACG
GACAACCATTGCTTCTATGTGTTGGGGGGGATCTTGACACGGGACCAGAT
CGATGAGCATTTGTGCatggacgtgatggtggcgggtcGGCGCATGTTCC
TGGAGGTAAAAGAGAACTTCGGTGTGCGTGACCTCAACGAGGATTGGTCA
TTGGGGAAGTCGCACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGG
TGGGAAAGTACTGTGTCACGTCagcggagaggggaacgacgtagaggaag
aggccgtgcttgtcccTATGAGAAGCCCTTTCAGCCCTTACGCAAGCGGA
CTCGTCCATATCATTCGTTGCCCTGTGGCGGATGCCTTTCCGCTGGACGC
TGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACAC
AGGACTCCATCAAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGAC
GCTGGTCGAgggcagggcaagggcggcgaAGAGCGGTTTCGAGTCGTCGT
GCCACGTGCGACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTT
CCAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTG
GCGGGACTGTACACAAACTTCACTTGTCCGCTGCTCGATCAGACGTTGGA
GTTTGTCGAGTACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAG
TCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTG
CGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGT
GCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAAGCTCTACTTCTACG
CCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGG
GACATCGACGAGTACCTGGTGCCACGTGACGAGGGCGCAAGCACGATTGT
GCAGTCGCTTGACACCGTGCTGAGAGAGGCTGACAAGACAGCGAAGGACG
TCTGTTTCATGTCTTTCACGTCATTTGGCTTCAtggaggtcaaggagctc
AGGACCATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCG
GCAAGCAAAGAGTGACGACAACTGGACAAAGTCGATCCTGTCCAACCGAA
ACGCCTACTTCACTGGCTCCCACTACCCGGGAGCTTGCAGGGACGTAGGG
GGTAGACGATGGGGCGAGAATCCACGCGCAGACCTCTGGCGTATCAATGC
AAGCGTACTGGCCATGCATCACTATCGAGGGAAGGTGTCCTCGGTAAAGA
AGCCGAAGTCCAACGtcgcggaggacgacgagtaCGGCATGCGTCTTTTC
CCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAtcgtgga
gagggagtgcggCTTCCGCCCGTCCATGGCTGTCGAAGATGTAGGGTTAG
GGAGCAAGAAGCAAGCTATGCGTCGCAAGATGTGTGTCCTATGCAGTGGA
GGATGAATGGCCACAAAGACTTTCCATTTCCAACGCTCTACGTGCTGCAA
CCCTTATCGACGCATCGCAGTATTGTCCCTCGCCATTCTCGGCCTGACCC
TGGTGTCATTCTATTTTCACATACGCTTCGACGTGACCTCGTTCAAACTC
CTAGCCTTCAACCTGATAGATGAGACTCCTTCCAGCAATGCAAACAACCT
CGTGACCATCACGACCACCACCAATAGCAGCAGTATATCCCCTACTCACa
caacagcaccagcacttCATGCAAGCCTCGCCCCTATGATCATGCCCGCT
TGGACGGACAACCATTGCTTCTATGTGTTGGGGGGGATCTTGACACGGGA
CCAGATCGATGAGCATTTGTGCatggacgtgatggtggcgggtcGGCGCA
TGTTCCTGGAGGTAAAAGAGAACTTCGGTGTGCGTGACCTCAACGAGGAT
TGGTCATTGGGGAAGTCGCACAACGTGGCAGATCCCGACGAGGTCGTGGC
GTTGGGTGGGAAAGTACTGTGTCACGTCagcggagaggggaacgacgtag
aggaagaggccgtgcttgtcccTATGAGAAGCCCTTTCAGCCCTTACGCA
AGCGGACTCGTCCATATCATTCGTTGCCCTGTGGCGGATGCCTTTCCGCT
GGACGCTGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGCGGCAATC
AAACACAGGACTCCATCAAGTATGGATGGGAGTGGCCCCGAAGCAACGGC
ACGGACGCTGGTCGAgggcagggcaagggcggcgaAGAGCGGTTTCGAGT
CGTCGTGCCACGTGCGACGCGTCACGCGGGCTACTTTAGCTACCTACCAG
AGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTC
TGTGTGGCGGGACTGTACACAAACTTCACTTGTCCGCTGCTCGATCAGAC
GTTGGAGTTTGTCGAGTACCACACACAGCAAGGGGTGGCGCACATCCACC
TGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGG
GTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGTCGACACA
GAGCGTGCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAAGCTCTACT
TCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGC
ATCTGGGACATCGACGAGTACCTGGTGCCACGTGACGAGGGCGCAAGCAC
GATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGGCTGACAAGACAGCGA
AGGACGTCTGTTTCATGTCTTTCACGTCATTTGGCTTCAtggaggtcaag
gagctcAGGACCATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCA
CTGGCGGCAAGCAAAGAGTGACGACAACTGGACAAAGTCGATCCTGTCCA
ACCGAAACGCCTACTTCACTGGCTCCCACTACCCGGGAGCTTGCAGGGAC
GTAGGGGGTAGACGATGGGGCGAGAATCCACGCGCAGACCTCTGGCGTAT
CAATGCAAGCGTACTGGCCATGCATCACTATCGAGGGAAGGTGTCCTCGG
TAAAGAAGCCGAAGTCCAACGtcgcggaggacgacgagtaCGGCATGCGT
CTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAt
cgtggagagggagtgcggCTTCCGCCCGTCCATGGCTGTCGAAGATGTAG
GGTTAGGGAGCAAGAAGCAAGCTATGCGTCGCAAGATGTGTGTCCTATGC
AGTGGAGGATGA

Synonyms

Publications