rna9843, rna9843 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9843
Unique Name	rna9843
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2623
Alignment location	KK037256.1:242262..244800 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF23
Orig transcript id	gnl\|cribi\|Naga_100164g5.9738.mrna
Orig protein id	gnl\|cribi\|Naga_100164g5.9738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:242262..244800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100164g5	gene9556	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9843	rna9843-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20858.1	cds9812	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:242262..244800+
coding sequence from alignment at KK037256.1:242262..244800+

mRNA sequence

>rna9843 ID=rna9843|Name=rna9843|organism=Nannochloropsis gaditana|type=mRNA|length=2623bp
CCAGACACTGCTATCTAAATCTTGCCGGACACGCACCTATCCAAGTGGAC
AGAGAACGCAAACTTGGTTATCGTCAATGGCAAACGATTGCGACATTGCC
TAAAGCTATCCTTTCCTATAAGGCCTCGATCATCACTAAGAAAGAAAGAC
CCTACTGACCTCTGCAGTATAAGATGGCCACAAAGACTTTCCATTTCCAA
CGCTCTACGTGCTGCAACCCTTATCGACGCATCGCAGCATTGTCCTTCGC
CATTCTCGGCCTGACCCTGGTTTCATTGTGTCTTTCCCCGCGCTTCGACG
TGACCTCGTTCAAACTCCTAGCCTTCAACCTGATAGACGAGACTCCATCC
AGCAATGCAAGCAACCTCGTGACCATCACGACCATCACCAATAGCAGCAG
TATACCCCCTACTGACACAACAGCACCAGCACTTCATGCAAGCCTCACCC
CTATGATCATGCCCGCTTGGACGGACAACCATCGTTTCTATGTGTTGGGG
GGGATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACGTGAT
GGTGGCGGGTCGGCGCATGTTCCTGGAGGTAAAAGAGAACTTCGGTGTGC
GTGACCTCAACGAGGATTGGTCTTTGGGGAAGTCGCACAACGTGGCAGAT
CCCGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGG
AGAGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCTATGAGAAGCC
CTTTCAGCCCTTACGCAAGCGGACTCGTCCATATCATTCGTTGTCCTGTG
GCGGATGCCTTTCCGCTGGACGCTGGAGACGCGGATGTGACCGTCCGGGT
CGTATTCGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGT
GGCCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGTGGC
GAAGAGCGGTTTCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTA
CTTTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGC
CCGACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTCACCTGT
CCGCTGCTGGATCAGACGTTGGAGTTTGTCGAGTACCACACACAGCAAGG
GGTGGCGCACATCCACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGT
GGAAGGCCGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTG
TCCGTTATGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGA
CCAGTTCAAGCTCTATTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCT
TGGCTACGTGGGTGGGCATCTGGGACATCGACGAGTTCCTGGTGCCACGT
GACGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGA
GGCTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTG
GCTTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCG
GGACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACAACTGGAC
AAAGTCGATCCTGTCCAACCGAAACGCCTACTTCACTGGCTCCCACTACC
CGGGAGCTTGCAGGGACCTAGGGGGTAGACGATGGGGCGAGAATCCACGC
GCAGACCTCTGGCGTATCAATGCAAGCGTACTAGCCATGCATCACTATCG
AGGGAAGGTGTCCTCGGTAAAGAAGCCGAAGTCCAACGTCGCGGAGGACG
ACGAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCA
AGGAAGGCAGACGAGATCGTGGGGAGGGAGTGCGGCTTCCGCCCGTCCAT
GGCTGTCGAGTATGTCGAGGGTCCTGAGGACCAGGGACGAGTAGCCGTGG
TGGGAGTGCCAAGGAAGGGAGATGAGTAGGAGCAACGTTTGACTCATGTC
CTGAGCAGAGATGTAGGGTTAGGGAGCGAGAAGCAAGGTATGCTCGAGGC
TCTTTCGAAGCAGCTACACGCATGTGTACGTGGCGTGGTCAAGCTCTGCA
AGACATTCGGCTTGCATGAGCGCTGGATCAATGACATACAGCGGACAAAC
ACGACGATAAGCGAGATAATACACCAGTGGTCCATCCGAAGATTGCTTTG
GAGTCGTGTACGAAAATCAAATGACCGTTTCTTGATCATCCCGAGTTGGC
GAGGGCGCACTTCATAAATGACCGTAATAAAACGGGCGGAATGTTACCAT
TGGTACATGGTGATAGACCTGTCTGCGTCTAAAACTATCCCGAGTAGCTG
ACTATATTTTGCCTGTGGCAGTGTCTCCTATCATCCTTTGTACAAAGATA
CCGTGGTGGGAGTGCCAATGAAGGGAGATGAGTAGGAGCAACGTTTGACT
CATGTCCTGAACAGAGATGTAGGGAGCAAGAAACAAGCTAGGTGTCGCAA
GATGTGTGTCCTATGCAGTGGAGGATGATTGTGCGACAGGCGAGAGATGC
ATACTTGTACAAGCGTGGTGGTCAGGGGCTTGAGAGGGGTTTGTGGTACA
TGAAAGGAACAAGAATATGCTGT

protein sequence of rna9843

>rna9843-protein ID=rna9843-protein|Name=rna9843|organism=Nannochloropsis gaditana|type=polypeptide|length=600bp
MAKTCLPFRRSTCCKPYRRIAVLSFAILGLTLVSLYFHMRFDVTSFELIA
FNLTEEAHSSNASNLVTITTITNSSSISPTDTTAPALHASLAPMIMPAWT
DNHRFYVLGGILTRDQIDERLYMDVMVAGRRMFLQVTDTYGVSDLDEDWS
WGKSHNVADPDEVVALGGKVLCHVSGEGNDVEEDAVLVPTRSTVGPYASA
LVHIIRCPVADAFPLDAGDVDVTVRVVFGGNQTQDSIEYGWEWPRSNGTD
AGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASKLDPWQAQPDKLHLCV
AGLYTNFTCPLLDQTLEFVEYHTQQGVAHIHLGVDYPVGSESWKAVLRVL
RPYIDERKVSVMSTQSVRGPGWIGTDQFKLYFYASCLAYTKGLATWVGIW
DIDEYLVPRDEGASTIVQSLDTVLRGADKTAKDVCFMSFTSFGFMEVKEL
RTIGNRTWAGQMFGHWRQAKSDDDWTKSILSNRNAYVAGFHYPGACRDLG
DRRWGDKRKDIWRINASVLAMHHYREKVSSVKKPKSNVAEDDEYGMRLFP
AVLDGLRSRKADEIVERECGFRPSMAVEYVEGPEEQGRVAVVGVPRKGDE

mRNA from alignment at KK037256.1:242262..244800+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9843 ID=rna9843|Name=rna9843|organism=Nannochloropsis gaditana|type=mRNA|length=2539bp|location=Sequence derived from alignment at KK037256.1:242262..244800+ (Nannochloropsis gaditana)
GAGATAATACACCAGTCATCCACCCACAAATTGCCTCGGAAGCGTGTACG
AAAATCAAATGACCGTTTCTTGATCATCCCGAGTTGGCGAGGGCGCACTT
CAAATATGACCGTAATAAAACGGGCGTACAATTAATACACGGTGATAGAC
CTGTCTGTTTCTAAAGTCATCCCAAATAGCTAACTACATTTGACCAGTAG
CAGTGTCTCCTATCATCCTTTGTACAAATATATGACCATGACTTATCACA
TTCGCATTGCTCTCTATGACGCAAATGACTGCCCTCATAATCTTAGTGTA
CGCGCGCACACCCAACACAGAATGCAAACGTGATCATTATCAGTTATACA
CAGTTAAGATATTGTTTCAACCTATCTTTTCATACCAAGGCTTCGATTAT
CACTAAGATAGAAAGACCCTACAAACCTCTGCAGTATAAGATGGCCAAAA
cgtgcctccctttccgacGGTCTACGTGCTGCAAACCTTATCGACGCATC
GCAGTACTGTCCTTCGCCATTCTCGGCCTGACCCTGGTTTCATTGTATTT
TCACATGCGCTTTGACGTGACCTCGTTCGAACTCATAGCCTTCAACCTGA
CAGAGGAGGCTCATTCCAGCAATGCAAGCAACCTCGTGACCATCACGACC
ATCACCAATAGCAGCAGTATATCCCCTACTGACacaacagcaccagcact
tCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACGGACAACCATC
GCTTCTATGTGTTGGGTGGTATCTTGACACGGGACCAGATCGATGAGCGT
TTGTACatggacgtgatggtggcgggtcGGCGCATGTTCCTGCAAGTAAC
AGATACTTACGGTGTGAGCGACCTCGACGAGGACTGGTCATGGGGGAAGT
CACACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGGTGGGAAAGTA
CTGTGTCACGTCagcggagaggggaacgaCGTAGAGGAAGATGCCGTGCT
TGTCCCGACAAGGAGCACTGTCGGCCCTTACGCAAGCGCACTCGTCCATA
TCATTCGTTGTCCTGTGGCGGATGCCTTTCCGCTGGACGCTGGAGACGTG
GATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACACAGGACTCCAT
CGAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGACGCTGGTCGAg
ggcagggcaagggcggcgaAGAGCGGTTCCGAGTCGTCGTGCCACGCGCG
ACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTTCAAAACTGGA
TCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTGGCGGGACTGT
ACACAAACTTCACCTGTCCGCTGCTGGATCAGACGTTGGAGTTTGTCGAG
TACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAGTCGACTATCC
TGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTGCGGCCTTACA
TAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGTGCGAGGCCCT
GGATGGATCGGGACGGACCAGTTCAAGCTCTACTTCTACGCCTCTTGTCT
CGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGGGACATCGACG
AGTACCTGGTGCCACGTGACGAGGGCGCAAGCACGATTGTGCAGTCGCTT
GACACCGTGTTGAGAGGGGCTGACAAGACAGCGAAGGACGTCTGTTTCAT
GTCTTTCACGTCATTTGGCTTCATGGAGGTCAAAGAGCTCAGGACCATCG
GCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCGGCAAGCAAAG
AGTGACGACGATTGGACAAAGTCGATCCTGTCCAACCGAAATGCCTATGT
TGCTGGTTTCCACTACCCGGGAGCTTGCAGGGACCTAGGGGATAGACGAT
GGGGCGATAAGCGCAAAGATATCTGGCGTATCAATGCAAGCGTACTAGCC
ATGCATCACTATCGAGAGAAGGTGTCCTCGGTAAAGAAGCCGAAGTCCAA
CGtcgcggaggacgacgagtaCGGCATGCGTCTTTTCCCCGCGGTCTTGG
ACGGCCTACGGTCAAGGAAGGCAGACGAGAtcgtggagagggagtgcggC
TTCCGTCCGTCCATGGCTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGG
ACGAGTAGCCGTGGTGGGAGtgccaaggaagggagatgagTAGGAGCAAC
GTTTGACTCATGTCCTGAGCAGAGATGTAGGGTTAGGGAGCAAGAAGCAA
GCTATGCGTCGCAAGATGTGTGTCCTATGCAGTGGAGGATGATTGTGCGA
CAGGCGAGAGATGCATACATGTACAAGTGTGTTGGTCAGGGGCTTGAGAG
GGGTTTGTGGTACATGAAAGGAACAAGAATATGCTTTGCAGCGCCAAGCC
CGCTCATGAATGTTCTACGATTACTCGGCATACTTGGACTCATTGGTGTT
CGTTTGATGCTATGTCTCGCGTGTCTCACTCATTGGTTG

Coding sequence (CDS) from alignment at KK037256.1:242262..244800+

>rna9843 ID=rna9843|Name=rna9843|organism=Nannochloropsis gaditana|type=CDS|length=1803bp|location=Sequence derived from alignment at KK037256.1:242262..244800+ (Nannochloropsis gaditana)
ATGGCCAAAAcgtgcctccctttccgacGGTCTACGTGCTGCAAACCTTA
TCGACGCATCGCAGTACTGTCCTTCGCCATTCTCGGCCTGACCCTGGTTT
CATTGTATTTTCACATGCGCTTTGACGTGACCTCGTTCGAACTCATAGCC
TTCAACCTGACAGAGGAGGCTCATTCCAGCAATGCAAGCAACCTCGTGAC
CATCACGACCATCACCAATAGCAGCAGTATATCCCCTACTGACacaacag
caccagcacttCATGCAAGCCTCGCCCCTATGATCATGCCCGCTTGGACG
GACAACCATCGCTTCTATGTGTTGGGTGGTATCTTGACACGGGACCAGAT
CGATGAGCGTTTGTACatggacgtgatggtggcgggtcGGCGCATGTTCC
TGCAAGTAACAGATACTTACGGTGTGAGCGACCTCGACGAGGACTGGTCA
TGGGGGAAGTCACACAACGTGGCAGATCCCGACGAGGTCGTGGCGTTGGG
TGGGAAAGTACTGTGTCACGTCagcggagaggggaacgaCGTAGAGGAAG
ATGCCGTGCTTGTCCCGACAAGGAGCACTGTCGGCCCTTACGCAAGCGCA
CTCGTCCATATCATTCGTTGTCCTGTGGCGGATGCCTTTCCGCTGGACGC
TGGAGACGTGGATGTGACCGTCCGGGTCGTATTTGGCGGCAATCAAACAC
AGGACTCCATCGAGTATGGATGGGAGTGGCCCCGAAGCAACGGCACGGAC
GCTGGTCGAgggcagggcaagggcggcgaAGAGCGGTTCCGAGTCGTCGT
GCCACGCGCGACGCGTCACGCGGGCTACTTTAGCTACCTACCAGAGGCTT
CAAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTCTGTGTG
GCGGGACTGTACACAAACTTCACCTGTCCGCTGCTGGATCAGACGTTGGA
GTTTGTCGAGTACCACACACAGCAAGGGGTGGCGCACATCCACCTGGGAG
TCGACTATCCTGTAGGATCGGAGTCGTGGAAGGCCGTGCTGCGGGTGCTG
CGGCCTTACATAGACGAGCGAAAGGTGTCCGTTATGTCGACACAGAGCGT
GCGAGGCCCTGGATGGATCGGGACGGACCAGTTCAAGCTCTACTTCTACG
CCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGCATCTGG
GACATCGACGAGTACCTGGTGCCACGTGACGAGGGCGCAAGCACGATTGT
GCAGTCGCTTGACACCGTGTTGAGAGGGGCTGACAAGACAGCGAAGGACG
TCTGTTTCATGTCTTTCACGTCATTTGGCTTCATGGAGGTCAAAGAGCTC
AGGACCATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCACTGGCG
GCAAGCAAAGAGTGACGACGATTGGACAAAGTCGATCCTGTCCAACCGAA
ATGCCTATGTTGCTGGTTTCCACTACCCGGGAGCTTGCAGGGACCTAGGG
GATAGACGATGGGGCGATAAGCGCAAAGATATCTGGCGTATCAATGCAAG
CGTACTAGCCATGCATCACTATCGAGAGAAGGTGTCCTCGGTAAAGAAGC
CGAAGTCCAACGtcgcggaggacgacgagtaCGGCATGCGTCTTTTCCCC
GCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAtcgtggagag
ggagtgcggCTTCCGTCCGTCCATGGCTGTCGAGTATGTCGAGGGTCCTG
AGGAGCAGGGACGAGTAGCCGTGGTGGGAGtgccaaggaagggagatgag
TAG

Synonyms

Publications