rna9828, rna9828 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9828
Unique Name	rna9828
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1932
Alignment location	KK037256.1:207258..209244 +

Link to JBrowse

Properties


Property Name	Value
Product	histone acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100498g4.5816.mrna
Orig protein id	gnl\|cribi\|Naga_100498g4.5816
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:207258..209244 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100498g4	gene9541	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9828	rna9828-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20878.1	cds9797	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:207258..209244+
coding sequence from alignment at KK037256.1:207258..209244+

mRNA sequence

>rna9828 ID=rna9828|Name=rna9828|organism=Nannochloropsis gaditana|type=mRNA|length=1932bp
ATGGGAAGATGGCGTTTCATTCTCGTACAGCTCCTTGTCATCTCTGCGGG
TGCGGTAGCTCAAGTGGTTGAGTTGGACAAAAGCGATGTTCCCGTTGATG
TTGAAAGTGGAGTCCAACAAATTCACATAGCCCAGGGCATCGATCCCACA
ACTATGGTCATTTCGTGGTTGACGCCCAACTATACGGCCCCAGCTCCAGC
CAGCCAAGTGCGATACGGCCTTGATCCGGACAATTTAGATTGGCTGATCA
CTAATCAAGATGCTTTCACATACACCATACCGGCGGGATACGCCAAACAA
GATCAAAAAAGTCCCTATCCGGATTATACAAGCGGCTGGTTGCACAACGT
GGAGCTTCGCAATCTCCAGCCCAACACCTTGTATTATTATCAATGCGGTG
ATTTTAGTATCCTTCCGTCTAATGGCGACGACTATCCATACACGCCCCCC
ACCGGACGTTCAGGGACGTTGTTCTTCAAGACATTACCCGCAGTCGGGAA
GAAGCTCAAAGAGCCTCTTGTATTCGGCATGGTGGCAGATATTGGACAAA
ATCCGGACGCGCAACGCTCGGTCTTACGCCTCTCCCAGAACGATCCTGCC
CTGATTCTCATCGTTGGAGACGACGGCTATGCAGATTGTGTGGGTACTCT
GTGGGATTCATTTCTTAATATGCTCACGGGCGTATCGTCTTTCGTCCCTA
CCATGTTGGTGGCAGGGAATCACGAGGTTGAGTGGCTATCGAATGCAACC
AGTCTCGAGACCCAAATTTTCATGTCGTTCGAGGCCCGTTTCCGCATGCC
ACAGATAGCACCGGGCGTCATAACAAGCGCCCCCTACCCGCCCACCCTGG
ACGCCAACAATAAATTATGTGCACCCAGCAAATATCAAGCGGGTTACGAA
TACGGAAACAGTTACTTCGTGTATGCCGCGGGCCCTGTGACGTTCTTGCA
TTTGAATCCTTACAGTTACACAAACACCACCTCCATCCAGTACCGATGGC
TTCTCAGCACCTTGCAAGGCATCGACCGTAAGAAGACACCATGGGTGGTG
GCCGTCTACCACAACCCCTGGTACAACTCCAATACGGAGAAACAGAACGA
ATTCGAGACGATTGACATGCAAGCAACCTTTGAACCCTTATTTTACGAGT
ACAAGGTCAATTTGGTCATGAATGGACACGTCCACGCCTATGAGCGCTCT
TATCCTGTCTTCCAGTTCGTCCCCACCTCCGACGCCACCGCATACGTGAT
GGCGGGCACAGGTGCCGATTCGGTGCACGACAACACTTGGCTCCCTCAAC
CGATCTGGAGCGCCTACCGAAACGGTTCCCAGTGGGGCACGGGTAGCCTT
ACTGTCAAGGATGATGACACCATGACTTGGCAGTGGCACTGGAATTTGGA
CGGCATTTTGGTCTCGGCGGACGAGGTGACAATTTGCAACACTCACCTGG
GCTACCCCACGTATTGTCAGGGCTACAAATATCAATGCGTCGCACGTCTG
CGGGGAATCAATAAAGCAGGCTGGGGTACTGAGGCGGCCCAGCTTATGCT
CAATTTGACAAGCGAAGCGGCTGGAACAGTCGCCAGTCAGATGAAAATCG
ACAGGCCTAACAGCAAAAATAATCGGACAATGTTGCGGAACGCTAATGGT
GTCCTACGGGTAGATTTCGACGTCTTTGGGCTGACTACCGAAGAAGAAGG
CTCAGCATCTGCTGCCGCAGTCGAGACCTACCTCTCTTCCACGAACTTCG
TGACGGCTTTCGGCAACGGAGTGACAAGGGCCTCTGCCCGTTGCGGCAAG
ATCAAGCATGAGACAACGGGGCCGTCGAGGGCAATAGAAGCGACAAAGCC
TGGGGCAAAATTCATTGCATTCCGACTGCGTCGAACTGGTGAATACCCGC
ACAAAATGTGCATGGTGACGCCTAAAATGTAA

protein sequence of rna9828

>rna9828-protein ID=rna9828-protein|Name=rna9828|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MTVGHMDKKRKHSAGTKRQNSVGGDIQLPQQQKREQTKQQQPRKSNDGKH
ADDDDPNKHEDDHPFKRGSIIMVKWAGDGTDRFCDVIERAQNEKTGEWSY
YVHYHDFNRRMDEWVNIPAILKPPSVAGAEHKAMKEQLEREKELAEQAEK
LCEASEEAGIRTRRQKQRGQEEDEVPLAAHLEHDEHEGLDEEQLKEHEEV
TKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCEASMRFFKH
KSELHRWLSKMDPKDRHPPGDEVYRDAKLSIFEVDGGEQKLYCQNLCYFA
KLFLDHKTLFYDVDPFLFYVLCEHDGRGFHPVGYFSKEKYSDAGFNLACI
LTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWAS
QLLALLKRMYAEAAQASGTPVEEVRLPPLSIMDLAKMTSFVTEDVVSTCT
FLGLLRYVSGQYLIYAPLPLVEELARKYPVKPPVVDAARLHWAPLITMDV
KRDKWSIHSKVQPPELQHHARTA

mRNA from alignment at KK037256.1:207258..209244+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9828 ID=rna9828|Name=rna9828|organism=Nannochloropsis gaditana|type=mRNA|length=1987bp|location=Sequence derived from alignment at KK037256.1:207258..209244+ (Nannochloropsis gaditana)
cttcgccgcgACCGTGGTGTGATTCGAGCTTGTCCTTCTTTAACGTTTTC
CGCTTTGGCGTCGCCGGTTGCTGCAGGGCACTTCTTTCCATCATCGTGCA
CTGACAAAAACGCGATGCTCTTACTTACAGCTTCACGACCTCCACGACTT
TACCTTCATCATCAGGATACACCTGTCGAAGGGAATTTATGACGGTGGGG
CACATGGACAAGAAACGAAAGCATTCTGCCGGCACGAAAAGACAGAACTC
GGTAGGGGGGGACATTCAGTTGCCCCAACAGCAAAAACGGGAACAAACGA
AGCAACAGCAACCCCGCAAGTCCAACGACGGCAAGCATGCGGACGACGAT
GATCCTAATAAACATGAAGACGATCATCCATTCAAGCGTGGCTCCATCAT
CATGGTCAAATGGGCGGGGGACGGAACTGACCGATTTTGTGATGTGATCG
AACGGGCTCAGAATGAAAAAACCGGGGAATGGAGTTACTATGTCCACTAC
CACGACTTCAATCGCCGCATGGATGAGTGGGTTAATATCCCTGCCATCCT
CAAACCGCCTTCTGTGGCAGGCGCGGAGCACAAGGCGATGAAGGAGCAAT
TAGAGCGGGAAAAGGTAGGGGTTCTCCGGACATGGGGTCTCGTTGAGGGG
GCTCGCATGAGTAGGAGAGGATAGTCAGCTATCCCATTCCATTCCTTTGC
CAGCTGCGTGCCcagtctctccctccccggcgaCGGGAGCTCGTACATTA
TCCCGCGATGGCTTCCTGTCTTGCTCTAGTGCCCCCCCTTGCCACTATTA
AtcaccaccttcctccccttgtctgGCCTTTTCGCCCGCAGGAGCTCGCC
GAACAGGCAGAGAAGCTGTGCGAAGCGAGCGAAGAAGCAGGCATCCGGAC
CCGGCGCCAGAAACAAcgcgggcaggaggaggacgaagtgCCCTTGGCGG
CCCATTTAGAGCATGACGAGCACGAGGGCCTGGATGAGGAGCAGTTGAAA
GAGCACGAGGAGGTGACCAAGGTCAAGAACGTCAAGTTCGTAGAGCTGGG
CAAGTACCGGATGGAGACCTGGTACtattctccctttcccaagGAGCTCT
TCTCGGAGGGCCCCGCCTTGGACGTGCTGTATTTTTGCGAGGCTTCGATG
CGTTTTTTCAAGCATAAGTCCGAGCTGCACCGTTGGCTGAGCAAAATGGA
CCCAAAGGACCGACATCCCCCCGGAGACGAGGTCTACCGAGACGCGAAGC
TCAGCATTTTCGAggtggatgggggggagcagAAGCTGTATTGCCAGAAC
CTTTGCTACTTTGCCAAGCTCTTTCTTGACCACAAGACTTTGTTCTACGA
CGTggatcccttcctcttctacGTCCTCTGCGAGCACGACGGGCGGGGCT
TTCACCCCGTCGGTTATTTCTCCAAGGAAAAATATTCGGACGCGGGCTTC
AATTTGGCCTGTATAttgaccttcccctcctaccAGCGCAAAGGCTACGG
GCGCTTCCTCATCAATTTCTCGTACGAATTaagcaagaaagaggaaaagt
tGGGGTCACCGGAAAAGCCGCTCTCTGACCTTGGCCTGGTCAGTTACCGT
TCCTATTGGGCGTCGCAATTGTTGGCCTTGTTGAAGAGGATGTACGCGGA
GGCAGCGCAAGCGAGTGGGACCCCCGTGGAAGAAgtgcgccttccccctc
tctccatcatGGACCTGGCCAAGATGACCTCCTTCGTGACCGAGGACGTG
GTCTCCACCTGCACCTTCCTGGGCCTCCTCCGTTACGTCTCGGGTCAGTA
TTTGATCTACGCGCCGTTACCCTTGGTCGAGGAACTGGCCCGAAAGTACC
CGGTGAAACCTCCCGTCGTGGACGCGGCGCGGCTGCACTGGGCCCCTCTG
ATCACCATGGACGTCAAGCGGGACAAGTGGTCGATCCATTCCAAGGTTCA
GCCTCCGGAGCTGCAGCACCATGCCAGGACGGCATAG

Coding sequence (CDS) from alignment at KK037256.1:207258..209244+

>rna9828 ID=rna9828|Name=rna9828|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at KK037256.1:207258..209244+ (Nannochloropsis gaditana)
ATGACGGTGGGGCACATGGACAAGAAACGAAAGCATTCTGCCGGCACGAA
AAGACAGAACTCGGTAGGGGGGGACATTCAGTTGCCCCAACAGCAAAAAC
GGGAACAAACGAAGCAACAGCAACCCCGCAAGTCCAACGACGGCAAGCAT
GCGGACGACGATGATCCTAATAAACATGAAGACGATCATCCATTCAAGCG
TGGCTCCATCATCATGGTCAAATGGGCGGGGGACGGAACTGACCGATTTT
GTGATGTGATCGAACGGGCTCAGAATGAAAAAACCGGGGAATGGAGTTAC
TATGTCCACTACCACGACTTCAATCGCCGCATGGATGAGTGGGTTAATAT
CCCTGCCATCCTCAAACCGCCTTCTGTGGCAGGCGCGGAGCACAAGGCGA
TGAAGGAGCAATTAGAGCGGGAAAAGGAGCTCGCCGAACAGGCAGAGAAG
CTGTGCGAAGCGAGCGAAGAAGCAGGCATCCGGACCCGGCGCCAGAAACA
AcgcgggcaggaggaggacgaagtgCCCTTGGCGGCCCATTTAGAGCATG
ACGAGCACGAGGGCCTGGATGAGGAGCAGTTGAAAGAGCACGAGGAGGTG
ACCAAGGTCAAGAACGTCAAGTTCGTAGAGCTGGGCAAGTACCGGATGGA
GACCTGGTACtattctccctttcccaagGAGCTCTTCTCGGAGGGCCCCG
CCTTGGACGTGCTGTATTTTTGCGAGGCTTCGATGCGTTTTTTCAAGCAT
AAGTCCGAGCTGCACCGTTGGCTGAGCAAAATGGACCCAAAGGACCGACA
TCCCCCCGGAGACGAGGTCTACCGAGACGCGAAGCTCAGCATTTTCGAgg
tggatgggggggagcagAAGCTGTATTGCCAGAACCTTTGCTACTTTGCC
AAGCTCTTTCTTGACCACAAGACTTTGTTCTACGACGTggatcccttcct
cttctacGTCCTCTGCGAGCACGACGGGCGGGGCTTTCACCCCGTCGGTT
ATTTCTCCAAGGAAAAATATTCGGACGCGGGCTTCAATTTGGCCTGTATA
ttgaccttcccctcctaccAGCGCAAAGGCTACGGGCGCTTCCTCATCAA
TTTCTCGTACGAATTaagcaagaaagaggaaaagttGGGGTCACCGGAAA
AGCCGCTCTCTGACCTTGGCCTGGTCAGTTACCGTTCCTATTGGGCGTCG
CAATTGTTGGCCTTGTTGAAGAGGATGTACGCGGAGGCAGCGCAAGCGAG
TGGGACCCCCGTGGAAGAAgtgcgccttccccctctctccatcatGGACC
TGGCCAAGATGACCTCCTTCGTGACCGAGGACGTGGTCTCCACCTGCACC
TTCCTGGGCCTCCTCCGTTACGTCTCGGGTCAGTATTTGATCTACGCGCC
GTTACCCTTGGTCGAGGAACTGGCCCGAAAGTACCCGGTGAAACCTCCCG
TCGTGGACGCGGCGCGGCTGCACTGGGCCCCTCTGATCACCATGGACGTC
AAGCGGGACAAGTGGTCGATCCATTCCAAGGTTCAGCCTCCGGAGCTGCA
GCACCATGCCAGGACGGCATAGATGACGGTGGGGCACATGGACAAGAAAC
GAAAGCATTCTGCCGGCACGAAAAGACAGAACTCGGTAGGGGGGGACATT
CAGTTGCCCCAACAGCAAAAACGGGAACAAACGAAGCAACAGCAACCCCG
CAAGTCCAACGACGGCAAGCATGCGGACGACGATGATCCTAATAAACATG
AAGACGATCATCCATTCAAGCGTGGCTCCATCATCATGGTCAAATGGGCG
GGGGACGGAACTGACCGATTTTGTGATGTGATCGAACGGGCTCAGAATGA
AAAAACCGGGGAATGGAGTTACTATGTCCACTACCACGACTTCAATCGCC
GCATGGATGAGTGGGTTAATATCCCTGCCATCCTCAAACCGCCTTCTGTG
GCAGGCGCGGAGCACAAGGCGATGAAGGAGCAATTAGAGCGGGAAAAGGA
GCTCGCCGAACAGGCAGAGAAGCTGTGCGAAGCGAGCGAAGAAGCAGGCA
TCCGGACCCGGCGCCAGAAACAAcgcgggcaggaggaggacgaagtgCCC
TTGGCGGCCCATTTAGAGCATGACGAGCACGAGGGCCTGGATGAGGAGCA
GTTGAAAGAGCACGAGGAGGTGACCAAGGTCAAGAACGTCAAGTTCGTAG
AGCTGGGCAAGTACCGGATGGAGACCTGGTACtattctccctttcccaag
GAGCTCTTCTCGGAGGGCCCCGCCTTGGACGTGCTGTATTTTTGCGAGGC
TTCGATGCGTTTTTTCAAGCATAAGTCCGAGCTGCACCGTTGGCTGAGCA
AAATGGACCCAAAGGACCGACATCCCCCCGGAGACGAGGTCTACCGAGAC
GCGAAGCTCAGCATTTTCGAggtggatgggggggagcagAAGCTGTATTG
CCAGAACCTTTGCTACTTTGCCAAGCTCTTTCTTGACCACAAGACTTTGT
TCTACGACGTggatcccttcctcttctacGTCCTCTGCGAGCACGACGGG
CGGGGCTTTCACCCCGTCGGTTATTTCTCCAAGGAAAAATATTCGGACGC
GGGCTTCAATTTGGCCTGTATAttgaccttcccctcctaccAGCGCAAAG
GCTACGGGCGCTTCCTCATCAATTTCTCGTACGAATTaagcaagaaagag
gaaaagttGGGGTCACCGGAAAAGCCGCTCTCTGACCTTGGCCTGGTCAG
TTACCGTTCCTATTGGGCGTCGCAATTGTTGGCCTTGTTGAAGAGGATGT
ACGCGGAGGCAGCGCAAGCGAGTGGGACCCCCGTGGAAGAAgtgcgcctt
ccccctctctccatcatGGACCTGGCCAAGATGACCTCCTTCGTGACCGA
GGACGTGGTCTCCACCTGCACCTTCCTGGGCCTCCTCCGTTACGTCTCGG
GTCAGTATTTGATCTACGCGCCGTTACCCTTGGTCGAGGAACTGGCCCGA
AAGTACCCGGTGAAACCTCCCGTCGTGGACGCGGCGCGGCTGCACTGGGC
CCCTCTGATCACCATGGACGTCAAGCGGGACAAGTGGTCGATCCATTCCA
AGGTTCAGCCTCCGGAGCTGCAGCACCATGCCAGGACGGCATAG

Synonyms

Publications