rna9824, rna9824 (mRNA) Nannochloropsis gaditana

Overview
Namerna9824
Unique Namerna9824
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length276
Alignment locationKK037256.1:190932..191999 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101783g1.3666.mrna
Orig protein idgnl|cribi|Naga_101783g1.3666
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:190932..191999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101783g1gene9537Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20880.1cds9793Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9824rna9824-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9824 ID=rna9824|Name=rna9824|organism=Nannochloropsis gaditana|type=mRNA|length=276bp
ATGCTACGCCGGGTGCTAGCTGTGGGTGGGAGGCAGTTAACTCATCGGGG
GGGCGGGCATAATCAAACCCGAATCCAACAAGCGGGTCTCCACGCGTCAC
GTCCAGCACTGGCGAAAATCTTGTGTGCGGACAGCATCGACCCGGTAATC
AAGGAGGGGGAAAAGGAAAAGAGTGGAGGAGTTAGGGCAAAAGGGTACAG
GCAGAAGGAGGGGAGGACCAGACAAGTTGATGTTGAACAGGCCGTGAGTG
GGTTTGGACGGATGCAGTGGCCATAA
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protein sequence of rna9824

>rna9824-protein ID=rna9824-protein|Name=rna9824|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MEEGGQVADGIRAGGSNQKNNLTRVPSPSSPVSASSSPVPLPPLILLAVF
LLLLTLLLIVALYFLFQALDRSSVGRSFITVIGSGGSSLLLALGFLPQLH
LMWREKKSAGFSLGLSLLDLLGCSLSILVLCLEARQGAAEGGREGKVEVG
SVFPYAIIVAFQVLGEGGRQGGRE
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mRNA from alignment at KK037256.1:190932..191999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9824 ID=rna9824|Name=rna9824|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at KK037256.1:190932..191999- (Nannochloropsis gaditana)
CCCATGCGCCTTCTCACCCTTGGTTGCAAGCGCTCCTGTAACCTCCTCCC
TCAATCCCGTCCTCCCTCCCCCTGGCTGTTCATCTCTCACATAAATGCAG
GGTCAACGAGTAGCATCTTTTCGGATGGATCTTGAGGTTGCCATTCAAAC
TTGTGGATACATAGCGGCCCTTTGTTTTGCCCTCCTCTTATTTCCCCAAA
TCATTCTTAATAACTCCCGTCGTTCCACTCAAGGGCTGTCAATCTCCTTG
GTTCTCCTGTGGCACGCTTCAGCCGTGCTAATAACACCTTACTTGCTTTT
CAAGCACGAAGCAACGCCTTTGTTATTGCAGTGGTCGATTTTTTCCGTTG
CTTCTGTGCTTCTGGAAACACAAATCTACGCCTTCCGGGACCCCGGGCTG
GAGGAGCTGACTGAGGAGGAGGAGGAGGAGGAGGACGAGGGGGGGGGCAG
GTCGAGATGGAGGAGGGAGGACAGGTGGCAGACGGGATAAGAGCGGGAGG
TAGCAACCAGAAGAATAATCTGACGCGGGTGCCCTCCCCCTCATCCCCGG
TCTCTGCCTCCTCCTCCCCCGTGCCCCTCCCTCCCCTCATCCTGCTTGCC
GTCTTCCTCCTCCTCCTCACCCTACTTCTCATCGTCGCCCTCTATTTCCT
CTTCCAAGCCCTCGATCGGTCATCTGTGGGCCGCTCCTTCATCACTGTCA
TTGGCAGTGGGGGCTCCAGCCTCCTTCTCGCCCTAGGTTTCCTCCCTCAA
CTTCACCTGATGTGGCGGGAGAAAAAAAGCGCGGGCTTTTCCTTGGGACT
GAGCCTCTTGGACTTGCTCGGGTGTTCTCTGTCCATCCTGGTTCTGTGCC
TGGAGGCGCGCCAAGGCGCGGCGGAGGGAGGACGGGAGGGAAAAGTGGAG
GTGGGGAGTGTGTTCCCGTACGCGATTATAGTGGCATTTCAGGTGCTTGG
GGAGGGAGGGAGGCAGGGAGGGAGGGAGTGAAGAAGCGGGAGAGAGGAGT
GGCCTTGAAAATGTCTGGATCGGACGGCTGAAGGTGCTTTTCCCCCTCTC
CTTCCCCCTCTCCTTCCC
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Coding sequence (CDS) from alignment at KK037256.1:190932..191999-

>rna9824 ID=rna9824|Name=rna9824|organism=Nannochloropsis gaditana|type=CDS|length=525bp|location=Sequence derived from alignment at KK037256.1:190932..191999- (Nannochloropsis gaditana)
ATGGAGGAGGGAGGACAGGTGGCAGACGGGATAAGAGCGGGAGGTAGCAA
CCAGAAGAATAATCTGACGCGGGTGCCCTCCCCCTCATCCCCGGTCTCTG
CCTCCTCCTCCCCCGTGCCCCTCCCTCCCCTCATCCTGCTTGCCGTCTTC
CTCCTCCTCCTCACCCTACTTCTCATCGTCGCCCTCTATTTCCTCTTCCA
AGCCCTCGATCGGTCATCTGTGGGCCGCTCCTTCATCACTGTCATTGGCA
GTGGGGGCTCCAGCCTCCTTCTCGCCCTAGGTTTCCTCCCTCAACTTCAC
CTGATGTGGCGGGAGAAAAAAAGCGCGGGCTTTTCCTTGGGACTGAGCCT
CTTGGACTTGCTCGGGTGTTCTCTGTCCATCCTGGTTCTGTGCCTGGAGG
CGCGCCAAGGCGCGGCGGAGGGAGGACGGGAGGGAAAAGTGGAGGTGGGG
AGTGTGTTCCCGTACGCGATTATAGTGGCATTTCAGGTGCTTGGGGAGGG
AGGGAGGCAGGGAGGGAGGGAGTGA
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Synonyms
Publications