rna9820, rna9820 (mRNA) Nannochloropsis gaditana

Overview
Namerna9820
Unique Namerna9820
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1753
Alignment locationKK037256.1:183226..185067 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100201g12.6920.mrna
Orig protein idgnl|cribi|Naga_100201g12.6920
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:183226..185067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100201g12gene9534Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9820rna9820-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20895.1cds9789Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9820 ID=rna9820|Name=rna9820|organism=Nannochloropsis gaditana|type=mRNA|length=1753bp
CCAGCTATTCTTACGAATAAGTAATTGCCTTCGGAGTCATATGTGCCATG
ATAATCCACCTACAAAGGAGCCCGCATAGTCACAAACAGCTAAAGAAAGG
ATCACCACAAGGATGACGGCTTCCCAATCCCCTTCCACATCTCATCAGGG
TAAAGAAATCACCTCCTCCCTGACAAAAACTTCAAACCTAAGGGCCCAAT
CTGTCGACAAGCGCTGTTTACAGCTGCTATGCGTCGATGCGCCTCCCCGT
TTGGAATGATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAAGGC
CATGGCATAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTT
GGCCTCAAGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGAAAC
TCTTCGCGTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATC
GGAGTCTGTCGGCCAGTACCACAAGAGTTTTCCCCGATTTACAAAGCCAC
CCTGACGATGCTGAAGCCCACGATCCTCCGACTCACTGGCCTTGGATCTC
TCTTTCTTGGCAAAAAAGAGCGCGAAGTCATGCTTTGGGACACACCAATT
TCCCCCACAGCCGCTTCCGTCAGTCGACCATCCTCCTCCCGCCCTCCCGC
AGACAATTTGCGATTAGCGGATCAGATGCTTCGTCTCGCCTTGGTGGGGA
AGCCACGCCGTTACTCCTACTGGTATTTGCAATATTTCACAACTACGGAC
GTCGGTAAATTACTGGGGCGATGGCATGGAGATTATAGGGAGGAGTCAAT
GGAGGGACGGAGGCAGGGAGAGAGCGTGGAGAACAACGTGATCCTGGCTA
AGATCGAAGAGATGACAGGGACGAGGATCTTGGTGGCGCCCCATGATGGA
ATGGGGGTGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGGAGTTGGTGAC
ACGAGCGCTAACTTTGTTACAGGGCGCCGTCGCGCAAAAGATATGCCCGA
GTCGAAAGGAAGGGGCGGAGATACTGGCGAAGATGGGAGGGAGGGAGGGA
GGACTAGGCAGGGACGAAAGATTGGAGGAGATCCGCCTCGAGTTGCGGGA
TAAACACAAGCTGAGGATGATGGAGGTGCAGCGAGATGGAAACTGCCTCT
TTCGAGCCCTCTCGGCTTTCGAGCATGGCACCGAGAGCCAGCACAAGCAG
GTGCGCGCCATGATTGTCGCCCGCTTGGAGGAGGCCCCGGAGGCCATGGC
AGTGACGGCACTAGTGGAAGGTGTTTCGGAGGAAGAGTATGTGAAAGGCA
TGGCCCAAGACCGGCAGTGGGGGGGCTACACCGAGTGCATCGCATATTCG
GAGGCAAGGGGAAGGTCTGTGCGCCTGTTCGTGGAGAACGAGAAAATTGG
ACTGCGTTGCACGGACATTGACGCCGGACAAGGGCCTCAGCAGGACGATG
GGAGCCGAGTACACTTGTTACTTTACAAATCGCACTACTGGTTACTAGTG
CGAGGGTGATCTATGATCGCATTAGTTGAAGGAAATTATCAGATTCAGCA
GTTTTCAACATTCGTGCACAGCGATTTTTAAAAACATCGTTTTGAGAAAT
GTATGTGAGCATGTACAAGTTTGTGGTGAGGTTAAGATAGCTGTCAACCA
CCTTAAAATTGGAGTCGCTCAGAACAGAACTGATCTGCTCGATTGAATTT
CATATACACATTTATATAATTTCTGGAAGAAGAATGTGAAGTAGGCGAAT
GTA
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protein sequence of rna9820

>rna9820-protein ID=rna9820-protein|Name=rna9820|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MLRYQFTKKLAIFLTSSLLLLLIWDEGAVIWHQHDQLSDGRRSLFSFLTR
ALSSGRSFRRRFIQRHIDSFTPSSHSRRTLCVDQGGFYKGSWVRTPNVTR
PHTHVKLKPHAFTRAELDFRKIYPIEQGWKKYHLPWNEYDFEPHQAACKI
PEWNVTRACQILDGALSASRRILFVGDSMSFTMALSFLLMMGGDGIITDQ
SAWKEQAICDEGILPKGPIFVHFIRNDALYVDPTIVKSWKEIPELSKTEM
AGSDFRVSKPWTPYYDESKPELVILNLGTHIHSTPFFKVLMDEVLSFLSQ
RRAMAVAMGRRPPRILWRTTAPGHPECWKHQEPIKAGKERASPLYEGVYR
DRYTWHLIEDMNTYMETRVKEVLGEKDGPTVMRLHDIVKERADGHLQGDL
GDCLHYHLPGPPDWWTRVFLEVLRELV
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mRNA from alignment at KK037256.1:183226..185067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9820 ID=rna9820|Name=rna9820|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp|location=Sequence derived from alignment at KK037256.1:183226..185067+ (Nannochloropsis gaditana)
GTTTTTTAATTCGTCCTGGACAATGGTCTTCATGTGAAAAAGCTTGCGAT
CCCCCCACCCTCAATAGTTTCTGCTATTTTAAAAAGTCCTGGATTGTATT
AAATGCTACGGTACCAATTTACTAAGAAACTTGCCATCTTTCTGACCTct
tcgctccttctcttgctGATATGGGATGAAGGGGCAGTGATATGGCACCA
ACACGACCAACTCTCTGATGGGAGGCggtccctcttctcctttttgaCCC
GTGCATTATCTTCGGGGCGATCGTTTCGGAGACGATTCATACAGAGGCAC
ATTGACTCTTTCACTCCGTCATCACACAGCCGTCGCACCCTTTGCGTGGA
TCAAGGTGGCTTTTACAAAGGCTCATGGGTGCGCACTCCAAATGTTACCC
GGCCGCACACGCACGTCAAGCTGAAACCCCACGCCTTCACTCGCGCAGAG
TTAGATTTTAGAAAAATATACCCAATAGAGCAAGGATGGAAGAAATATCA
TCTACCATGGAATGAGTACGACTTCGAGCCGCACCAAGCGGCGTGTAAAA
TACCTGAGTGGAATGTAACCAGAGCTTGCCAGATATTGGACGGTGCCTTG
TCTGCAAGCCGCCGGATTCTCTTCGTGGGAGACTCCATGTCGTTCACTat
ggccctctccttcttgcttATGATGGGTGGCGACGGTATTATTACCGACC
AAAGTGCGTGGAAAGAGCAAGCCATTTGTGACGAGGGAATCTTGCCCAAG
GGCCCTATATTTGTACATTTTATCCGCAACGACGCCCTTTATGTTGACCC
TACCATTGTGAAAAGTTGGAAAGAAATTCCGGAGCTGAGCAAAACGGAGA
TGGCGGGATCAGATTTCCGGGTCAGCAAACCATGGACGCCGTATTACGAT
GAGTCTAAACCGGAGCTCGTGATATTGAATTTGGGTACGCACATCCACTC
TACGCCTTTCTTCAAAGTTTTGATGGACGAGGTTTTGTCATTTTTATCCC
AACGTCGAGCGATGGCGGTGGCGATGGGTCGACGGCCTCCGAGAATTTTA
TGGCGAACCACTGCGCCAGGTCATCCGGAATGTTGGAAACACCAGGAGCC
GATAAaggcagggaaagagagagcatCGCCTTTGTATGAAGGGGTCTACC
GTGATCGATACACGTGGCATTTGATCGAAGACATGAATACATACATGGAA
ACGCGGGTGAAGGAGGTACtcggggagaaggatgggCCGACTGTGATGAG
ATTGCACGACATTGTCAAGGAGCGGGCGGACGGGCATCTCCAAGGCGATC
TTGGCGATTGCCTGCACTACCATTTACCTGGACCTCCGGATTGGTGGACA
AGGGTGTTTCTTGAGGTGCTGAGGGAGTTGGTgtgaagggaggatgagag
agaagcgagggcagggggtcCTTTTCGAGGCTGACTCTCTGACGCACAAA
ATGTGTTCAATCGACTTTTTTACCGCCTAGAAGGCTAATTTTAGATATTT
TCCCTAAAGACCTAGCATTCACTCAAACTCAGGCAAAATACTTTACATGA
AATTACACCTTGGACTTTTTATAATACACGTATGCGAGTTTTGATGGCGA
CGGGCAGTTCTTGCGGGCTTTGTCAATTTCATCATGTTATTTGATGAAAT
TGTAGGACGTGGCAATCCAGCATGGACGTGCTGGTGACAGGCCACAATTT
GAGAAAAACAATTTAAAATTGCAAGAAttttggggaagggaagttGATGC
GATTGTGATCATTAAAGTGGGATCAAAAGTAACTACATGGGGGATAAACT
GATGACTTCAAGAGCCTATTAAATACTCGAATAAATAAAAGG
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Coding sequence (CDS) from alignment at KK037256.1:183226..185067+

>rna9820 ID=rna9820|Name=rna9820|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at KK037256.1:183226..185067+ (Nannochloropsis gaditana)
ATGCTACGGTACCAATTTACTAAGAAACTTGCCATCTTTCTGACCTcttc
gctccttctcttgctGATATGGGATGAAGGGGCAGTGATATGGCACCAAC
ACGACCAACTCTCTGATGGGAGGCggtccctcttctcctttttgaCCCGT
GCATTATCTTCGGGGCGATCGTTTCGGAGACGATTCATACAGAGGCACAT
TGACTCTTTCACTCCGTCATCACACAGCCGTCGCACCCTTTGCGTGGATC
AAGGTGGCTTTTACAAAGGCTCATGGGTGCGCACTCCAAATGTTACCCGG
CCGCACACGCACGTCAAGCTGAAACCCCACGCCTTCACTCGCGCAGAGTT
AGATTTTAGAAAAATATACCCAATAGAGCAAGGATGGAAGAAATATCATC
TACCATGGAATGAGTACGACTTCGAGCCGCACCAAGCGGCGTGTAAAATA
CCTGAGTGGAATGTAACCAGAGCTTGCCAGATATTGGACGGTGCCTTGTC
TGCAAGCCGCCGGATTCTCTTCGTGGGAGACTCCATGTCGTTCACTatgg
ccctctccttcttgcttATGATGGGTGGCGACGGTATTATTACCGACCAA
AGTGCGTGGAAAGAGCAAGCCATTTGTGACGAGGGAATCTTGCCCAAGGG
CCCTATATTTGTACATTTTATCCGCAACGACGCCCTTTATGTTGACCCTA
CCATTGTGAAAAGTTGGAAAGAAATTCCGGAGCTGAGCAAAACGGAGATG
GCGGGATCAGATTTCCGGGTCAGCAAACCATGGACGCCGTATTACGATGA
GTCTAAACCGGAGCTCGTGATATTGAATTTGGGTACGCACATCCACTCTA
CGCCTTTCTTCAAAGTTTTGATGGACGAGGTTTTGTCATTTTTATCCCAA
CGTCGAGCGATGGCGGTGGCGATGGGTCGACGGCCTCCGAGAATTTTATG
GCGAACCACTGCGCCAGGTCATCCGGAATGTTGGAAACACCAGGAGCCGA
TAAaggcagggaaagagagagcatCGCCTTTGTATGAAGGGGTCTACCGT
GATCGATACACGTGGCATTTGATCGAAGACATGAATACATACATGGAAAC
GCGGGTGAAGGAGGTACtcggggagaaggatgggCCGACTGTGATGAGAT
TGCACGACATTGTCAAGGAGCGGGCGGACGGGCATCTCCAAGGCGATCTT
GGCGATTGCCTGCACTACCATTTACCTGGACCTCCGGATTGGTGGACAAG
GGTGTTTCTTGAGGTGCTGAGGGAGTTGGTgtga
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Synonyms
Publications