rna9817, rna9817 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9817
Unique Name	rna9817
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1209
Alignment location	KK037256.1:177873..180083 +

Link to JBrowse

Properties


Property Name	Value
Product	Ankyrin repeat-containing domain protein
Orig transcript id	gnl\|cribi\|Naga_100201g10.6914.mrna
Orig protein id	gnl\|cribi\|Naga_100201g10.6914
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:177873..180083 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100201g10	gene9532	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9817	rna9817-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20889.1	cds9786	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:177873..180083+
coding sequence from alignment at KK037256.1:177873..180083+

mRNA sequence

>rna9817 ID=rna9817|Name=rna9817|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
ATGGCAGACGAGCCTGTGTCGGTGTCCTCGCCCACATCCTCGGGCCCGGG
CACGATGAGGACCAAATACACAGAAGCGTCCCTTTCTTCCTCTCATTTTT
CCGCAAAAGAGATACCAGCTGTAGAGGGACGTGATGATGTGGAGGAGGAA
GAATTTTTTGAAGCCGAAAATGACGTGAATGTAGTGGAGGACATCGGGGC
GGAGGACCTGTCGGAGCAATTTGAAGAACTGCGGGTGGTGCCAGAAGAGG
AACGAGACGCAGAGAAAGCACGGGGCTTGAAGGAGGAGGGTAACACCTGC
TACCAAGCGCAGGATTTCCAGGGGGCCGCAGAGTGCTACGGTCTTGCCAT
CAAATTCTGCCCATACCAGTACGACAAGGAGAAAGAATTGGCAGAGGCAC
GTCGACGGGCCTGGGCCGCCCAAGAAGAAGAGGAAAGGGCGCGAAAGAGT
GGGGAAGAGAACGTCGCGACGCCCGAGACAGGAGGCAGCGGAGTGTCCGG
GGCCACGGCACCCTCTGGAACGGGAGGGAAGGAGGGGACTACCGGGTCCT
GTGGGGGCTCCCATCAGGCGGACGCAACGCGCGCGGAGGAGGAAAAAGAA
CCGTTTGCCGAGTTTAAGGAGGAGTGTGCCGTGTACTACTGCAACCGGGC
AGCATGCTGGGTCCATCTGGGGCGGGACCAAGAGGTGGTGGAGGACTGCA
GTGTCGCCCTCAAGCTTAAATCCGGGTATGCAAAAGCGTTGATGCGCCGG
GCCCAGGCCTCCGAGCGTCTGGACAAGCTGGAGGACGCCCTGAAAGATTA
CAAGGAGGTGCTGGCCTTGGACCCGGGGAACCGCGTGGTCCGCGCCAAGA
TGCCTGGGTTGGAAAAAGAATGTGCCGCGCGCATGGAGAAGCTCAAGACG
GAGACGATAGGGAAACTGAAGGATCTGGGCAACAGCGTCCTGAGTAATTT
TGGACTGAGTTTGGACAATTTTAAGATGCAGCAGGACCCCAACACGGGCT
CCTACAGCTTCAGCTTTCAAAAGCAAAGTGGAGTGGGAAAGGGCCTGTTT
GTTCTTAACGACATAATCGTGCCAGGTGTTATGTGGAATATCTCGGGAAC
GGCAGCATCCCTCTGTCTGTTGGATTTTGGATCTCAGGTCTTTAGCGCTT
TCACGTCGAAGCATTCTTTCACTTCTCATCATGTACATCTTATTGAAATG
TTGAATTAA

protein sequence of rna9817

>rna9817-protein ID=rna9817-protein|Name=rna9817|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MSQAKQSPSKMLVMLPIFFMAQKVTYTDDLVNILRISYYAVQAVTLLVAY
VYIRNKIMAANDRTPIYLPPVALPFGMGPAADNPRPKETSYFDHEMEQLN
TLIRSTLIGVAMVSFMHWKMGVKPVLLLQTLMGPMNLMDNGLVKKYVLGS
KERVWGELLDGEDDATIPVGAVGAVEKEGEGESVEEKAKRMEKVMDEVFN
KEKPCAALLKVLQKENVNYQTQQEQYSPLTVLCSRPDVTEEQVKQALFLG
AHKFHRDEDGCTALHWAAMKGAVAAATVLTSGNNRDVEKLLGMQDGDKKT
AVELAKESIEPTHEQVEAILQAAEKRIEAAMVENLD

mRNA from alignment at KK037256.1:177873..180083+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9817 ID=rna9817|Name=rna9817|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp|location=Sequence derived from alignment at KK037256.1:177873..180083+ (Nannochloropsis gaditana)
CTCGACGAAATGGACCGCATGGTCTGACTGCATCTCTCTCACAAACCcac
cctcctttgcttcctcccattGTTCCTTGCAGGAGGACCACCGTGCCCCT
CGAAAGCAATCGCAAGCGACATCGTCACCCCTTCGAGCATGTCCCAAGCC
AAGCAAAGCCCCAGCAAGATGCTGGTTATGCTCCCCATTTTTTTCATGGC
TCAAAAGGTGACTACGACGGAAGGGACCTCGGcgccgccccccttcccat
tGCTTCACCCAAAACCCCTGTTTGTCTCTTGCAAGAAATGTCGTCTTAGC
ACACCTGCACCTCGCATGCACAtgttcttcattttcttggTGAAAGTTTC
TCGGTTTCTTCTGCTTGCATTGTCTCACGCTTATTTTCGTTCTGGCGCTA
TGCGGTTCTCGCGTTCCCCCTGCTCAAACCCCTCGGTTATCCTTTTCCAG
GTCACCTACACCGACGATCTTGTCAACATTCTCCGTATTTCCTACTACGC
CGTCCAAGCCGTCACCCTTCTTGTCGCCTACGTATACATTCGCAACAAAA
TCATGGCGGCCAACGATCGCACCCCCATATACCTTCCCCCTGTGGCCTTG
CCCTTCGGCATGGGTCCTGCTGCGGACAACCCCCGGCCAAAGGAAACCAG
CTACTTTGACCACGAGATGGAGCAGGTGCGTGGGCGATTTGGAAATGGTG
AAGGTGGCAGACTTGAATTCGATCGGCGCTTGTCTAAGTCGTGTTTCTGA
GTCTAACCAGCGTCATTGGCTTGCTTCcgtccttcgcttcctctttctct
ccatcacctccccatcccccatCTTTAGTTGAACACACTGATCCGTTCCA
CCCTGATCGGCGTCGCGATGGTCTCTTTCATGCATTGGAAGATGGGCGTG
AAAcccgtcctcctgctccaaaCCCTCATGGGCCCGATGAACCTGATGGA
CAATGGGCTGGTTAAGAAATACGTGTTGGGGAGCAAGGAGCGTGTCTGGG
GGGAGCTTCTAGACGGGGAAGATGACGCGACGATCCCTGTCGGGGCTgtc
ggggcggtggagaaggagggagaaggggagagcgtggaggagaaggctaa
acggatggagaaggtgatGGACGAGGTCTTTAACAAGGAGAAGCCCTGTG
CGGCCCTGCTCAAAGTGTTACAGAAGGAGAATGTCAATTACCAGACGCAG
CAGGAGCAATACAGGTCCGTAAATGTCTGAGATAAGGGGATACGATGCGG
GGACTAACGCTCCGACTGCGCAAAATCCTcaccgtcccctccctttctct
acCCCACCCTGCTCCACAGCCCCCTCACTGTTCTTTGCAGCCGCCCCGAT
GTGACGGAGGAGCAAGTCAAGCAAGCGCTGTTCCTGGGTGCCCATAAATT
CCATAGGGACGAAGACGGGTGCACGGCCCTACATTGGGCAGCCATGAaag
gggcggtggcggctgctACGGTTTTGACCTCAGGGAATAACCGTGACGTC
GAGGTACGCGGATCTGTAGGCTGGATGGCGAGAAGGGATATTCGACTCGT
GTGCGGCCTTTTCTGGGTTTTCTTCAAGCGCTTGCCAAAGACCGTGACGG
GGCAAGGAGGTCACCACCCCACCAGCGATATTTGCTTTTGAGAAATCAGG
AGAGAtggagatgaagaggaaggcgatgtgTGCAAGAATGTAAGAAAAAT
GCTTGCGTGACTCATCAATGTTGCGTGTATCTTTTCTCACTCCTGCAGAA
ATTGCTTGGAATGCAAGATGGGGACAAGAAAACGGCCGTGGAACTGGCGA
AAGAAAGTATTGAGCCGACTCACGAGCAAGTGGAGGCAATTTTACAGGCT
gcggagaagaggattgAGGCAGCGATGGTAGAAAATTTGGATTGAATGGG
CTGCATCCAGTATAGGAAGGAGGTTTGAGTTTGTGGTGAGCGAGGAACAA
CGCTGTGAATAGAGTGGAAGAAACGGATTGAGTTGAGGACAGTGTCTCGA
TCAAGAGAAGCAGATAGAAGAATTAAATTTTTGGAAGCGCTATGAAGAAA
TGAGAAGAAGGATATGGGGGATGTTGTTTCTTGATGCGAGGCACAGCTTT
TTGCAAGTGATGCACTTTCATGTCCAAGGGCGCCAAAAGTGAAATGCGTG
GTCTCTTCATTCCAGTAAAGTAAAAACAAACGATCAAATTCTCCAACAAG
ATCCATGTGGT

Coding sequence (CDS) from alignment at KK037256.1:177873..180083+

>rna9817 ID=rna9817|Name=rna9817|organism=Nannochloropsis gaditana|type=CDS|length=5055bp|location=Sequence derived from alignment at KK037256.1:177873..180083+ (Nannochloropsis gaditana)
ATGTCCCAAGCCAAGCAAAGCCCCAGCAAGATGCTGGTTATGCTCCCCAT
TTTTTTCATGGCTCAAAAGGTCACCTACACCGACGATCTTGTCAACATTC
TCCGTATTTCCTACTACGCCGTCCAAGCCGTCACCCTTCTTGTCGCCTAC
GTATACATTCGCAACAAAATCATGGCGGCCAACGATCGCACCCCCATATA
CCTTCCCCCTGTGGCCTTGCCCTTCGGCATGGGTCCTGCTGCGGACAACC
CCCGGCCAAAGGAAACCAGCTACTTTGACCACGAGATGGAGCAGTTGAAC
ACACTGATCCGTTCCACCCTGATCGGCGTCGCGATGGTCTCTTTCATGCA
TTGGAAGATGGGCGTGAAAcccgtcctcctgctccaaaCCCTCATGGGCC
CGATGAACCTGATGGACAATGGGCTGGTTAAGAAATACGTGTTGGGGAGC
AAGGAGCGTGTCTGGGGGGAGCTTCTAGACGGGGAAGATGACGCGACGAT
CCCTGTCGGGGCTgtcggggcggtggagaaggagggagaaggggagagcg
tggaggagaaggctaaacggatggagaaggtgatGGACGAGGTCTTTAAC
AAGGAGAAGCCCTGTGCGGCCCTGCTCAAAGTGTTACAGAAGGAGAATGT
CAATTACCAGACGCAGCAGGAGCAATACAGCCCCCTCACTGTTCTTTGCA
GCCGCCCCGATGTGACGGAGGAGCAAGTCAAGCAAGCGCTGTTCCTGGGT
GCCCATAAATTCCATAGGGACGAAGACGGGTGCACGGCCCTACATTGGGC
AGCCATGAaaggggcggtggcggctgctACGGTTTTGACCTCAGGGAATA
ACCGTGACGTCGAGAAATTGCTTGGAATGCAAGATGGGGACAAGAAAACG
GCCGTGGAACTGGCGAAAGAAAGTATTGAGCCGACTCACGAGCAAGTGGA
GGCAATTTTACAGGCTgcggagaagaggattgAGGCAGCGATGGTAGAAA
ATTTGGATTGAATGTCCCAAGCCAAGCAAAGCCCCAGCAAGATGCTGGTT
ATGCTCCCCATTTTTTTCATGGCTCAAAAGGTCACCTACACCGACGATCT
TGTCAACATTCTCCGTATTTCCTACTACGCCGTCCAAGCCGTCACCCTTC
TTGTCGCCTACGTATACATTCGCAACAAAATCATGGCGGCCAACGATCGC
ACCCCCATATACCTTCCCCCTGTGGCCTTGCCCTTCGGCATGGGTCCTGC
TGCGGACAACCCCCGGCCAAAGGAAACCAGCTACTTTGACCACGAGATGG
AGCAGTTGAACACACTGATCCGTTCCACCCTGATCGGCGTCGCGATGGTC
TCTTTCATGCATTGGAAGATGGGCGTGAAAcccgtcctcctgctccaaaC
CCTCATGGGCCCGATGAACCTGATGGACAATGGGCTGGTTAAGAAATACG
TGTTGGGGAGCAAGGAGCGTGTCTGGGGGGAGCTTCTAGACGGGGAAGAT
GACGCGACGATCCCTGTCGGGGCTgtcggggcggtggagaaggagggaga
aggggagagcgtggaggagaaggctaaacggatggagaaggtgatGGACG
AGGTCTTTAACAAGGAGAAGCCCTGTGCGGCCCTGCTCAAAGTGTTACAG
AAGGAGAATGTCAATTACCAGACGCAGCAGGAGCAATACAGCCCCCTCAC
TGTTCTTTGCAGCCGCCCCGATGTGACGGAGGAGCAAGTCAAGCAAGCGC
TGTTCCTGGGTGCCCATAAATTCCATAGGGACGAAGACGGGTGCACGGCC
CTACATTGGGCAGCCATGAaaggggcggtggcggctgctACGGTTTTGAC
CTCAGGGAATAACCGTGACGTCGAGAAATTGCTTGGAATGCAAGATGGGG
ACAAGAAAACGGCCGTGGAACTGGCGAAAGAAAGTATTGAGCCGACTCAC
GAGCAAGTGGAGGCAATTTTACAGGCTgcggagaagaggattgAGGCAGC
GATGGTAGAAAATTTGGATTGAATGTCCCAAGCCAAGCAAAGCCCCAGCA
AGATGCTGGTTATGCTCCCCATTTTTTTCATGGCTCAAAAGGTCACCTAC
ACCGACGATCTTGTCAACATTCTCCGTATTTCCTACTACGCCGTCCAAGC
CGTCACCCTTCTTGTCGCCTACGTATACATTCGCAACAAAATCATGGCGG
CCAACGATCGCACCCCCATATACCTTCCCCCTGTGGCCTTGCCCTTCGGC
ATGGGTCCTGCTGCGGACAACCCCCGGCCAAAGGAAACCAGCTACTTTGA
CCACGAGATGGAGCAGTTGAACACACTGATCCGTTCCACCCTGATCGGCG
TCGCGATGGTCTCTTTCATGCATTGGAAGATGGGCGTGAAAcccgtcctc
ctgctccaaaCCCTCATGGGCCCGATGAACCTGATGGACAATGGGCTGGT
TAAGAAATACGTGTTGGGGAGCAAGGAGCGTGTCTGGGGGGAGCTTCTAG
ACGGGGAAGATGACGCGACGATCCCTGTCGGGGCTgtcggggcggtggag
aaggagggagaaggggagagcgtggaggagaaggctaaacggatggagaa
ggtgatGGACGAGGTCTTTAACAAGGAGAAGCCCTGTGCGGCCCTGCTCA
AAGTGTTACAGAAGGAGAATGTCAATTACCAGACGCAGCAGGAGCAATAC
AGCCCCCTCACTGTTCTTTGCAGCCGCCCCGATGTGACGGAGGAGCAAGT
CAAGCAAGCGCTGTTCCTGGGTGCCCATAAATTCCATAGGGACGAAGACG
GGTGCACGGCCCTACATTGGGCAGCCATGAaaggggcggtggcggctgct
ACGGTTTTGACCTCAGGGAATAACCGTGACGTCGAGAAATTGCTTGGAAT
GCAAGATGGGGACAAGAAAACGGCCGTGGAACTGGCGAAAGAAAGTATTG
AGCCGACTCACGAGCAAGTGGAGGCAATTTTACAGGCTgcggagaagagg
attgAGGCAGCGATGGTAGAAAATTTGGATTGAATGTCCCAAGCCAAGCA
AAGCCCCAGCAAGATGCTGGTTATGCTCCCCATTTTTTTCATGGCTCAAA
AGGTCACCTACACCGACGATCTTGTCAACATTCTCCGTATTTCCTACTAC
GCCGTCCAAGCCGTCACCCTTCTTGTCGCCTACGTATACATTCGCAACAA
AATCATGGCGGCCAACGATCGCACCCCCATATACCTTCCCCCTGTGGCCT
TGCCCTTCGGCATGGGTCCTGCTGCGGACAACCCCCGGCCAAAGGAAACC
AGCTACTTTGACCACGAGATGGAGCAGTTGAACACACTGATCCGTTCCAC
CCTGATCGGCGTCGCGATGGTCTCTTTCATGCATTGGAAGATGGGCGTGA
AAcccgtcctcctgctccaaaCCCTCATGGGCCCGATGAACCTGATGGAC
AATGGGCTGGTTAAGAAATACGTGTTGGGGAGCAAGGAGCGTGTCTGGGG
GGAGCTTCTAGACGGGGAAGATGACGCGACGATCCCTGTCGGGGCTgtcg
gggcggtggagaaggagggagaaggggagagcgtggaggagaaggctaaa
cggatggagaaggtgatGGACGAGGTCTTTAACAAGGAGAAGCCCTGTGC
GGCCCTGCTCAAAGTGTTACAGAAGGAGAATGTCAATTACCAGACGCAGC
AGGAGCAATACAGCCCCCTCACTGTTCTTTGCAGCCGCCCCGATGTGACG
GAGGAGCAAGTCAAGCAAGCGCTGTTCCTGGGTGCCCATAAATTCCATAG
GGACGAAGACGGGTGCACGGCCCTACATTGGGCAGCCATGAaaggggcgg
tggcggctgctACGGTTTTGACCTCAGGGAATAACCGTGACGTCGAGAAA
TTGCTTGGAATGCAAGATGGGGACAAGAAAACGGCCGTGGAACTGGCGAA
AGAAAGTATTGAGCCGACTCACGAGCAAGTGGAGGCAATTTTACAGGCTg
cggagaagaggattgAGGCAGCGATGGTAGAAAATTTGGATTGAATGTCC
CAAGCCAAGCAAAGCCCCAGCAAGATGCTGGTTATGCTCCCCATTTTTTT
CATGGCTCAAAAGGTCACCTACACCGACGATCTTGTCAACATTCTCCGTA
TTTCCTACTACGCCGTCCAAGCCGTCACCCTTCTTGTCGCCTACGTATAC
ATTCGCAACAAAATCATGGCGGCCAACGATCGCACCCCCATATACCTTCC
CCCTGTGGCCTTGCCCTTCGGCATGGGTCCTGCTGCGGACAACCCCCGGC
CAAAGGAAACCAGCTACTTTGACCACGAGATGGAGCAGTTGAACACACTG
ATCCGTTCCACCCTGATCGGCGTCGCGATGGTCTCTTTCATGCATTGGAA
GATGGGCGTGAAAcccgtcctcctgctccaaaCCCTCATGGGCCCGATGA
ACCTGATGGACAATGGGCTGGTTAAGAAATACGTGTTGGGGAGCAAGGAG
CGTGTCTGGGGGGAGCTTCTAGACGGGGAAGATGACGCGACGATCCCTGT
CGGGGCTgtcggggcggtggagaaggagggagaaggggagagcgtggagg
agaaggctaaacggatggagaaggtgatGGACGAGGTCTTTAACAAGGAG
AAGCCCTGTGCGGCCCTGCTCAAAGTGTTACAGAAGGAGAATGTCAATTA
CCAGACGCAGCAGGAGCAATACAGCCCCCTCACTGTTCTTTGCAGCCGCC
CCGATGTGACGGAGGAGCAAGTCAAGCAAGCGCTGTTCCTGGGTGCCCAT
AAATTCCATAGGGACGAAGACGGGTGCACGGCCCTACATTGGGCAGCCAT
GAaaggggcggtggcggctgctACGGTTTTGACCTCAGGGAATAACCGTG
ACGTCGAGAAATTGCTTGGAATGCAAGATGGGGACAAGAAAACGGCCGTG
GAACTGGCGAAAGAAAGTATTGAGCCGACTCACGAGCAAGTGGAGGCAAT
TTTACAGGCTgcggagaagaggattgAGGCAGCGATGGTAGAAAATTTGG
ATTGA

Synonyms

Publications