rna9811, rna9811 (mRNA) Nannochloropsis gaditana

Overview
Namerna9811
Unique Namerna9811
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1254
Alignment locationKK037256.1:165487..165876 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100201g4.6909.mrna
Orig protein idgnl|cribi|Naga_100201g4.6909
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:165487..165876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100201g4gene9526Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9811rna9811-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20884.1cds9780Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9811 ID=rna9811|Name=rna9811|organism=Nannochloropsis gaditana|type=mRNA|length=1254bp
GAAGCCTCAAGCCGATTTGGCGACAGAGTCACTTAAAAAACACCAGCACG
CCTGCCTGATACAAGCCGAACAGAGACAGAGACTGTCCACGCATCCCTGA
TGGTCGCATCGACGACATCACAACGCAAACGGCATGACGCAGATGGTGTC
TTGAATGCCTGTGTCTGGGCAACATTACAAGGAGGGCTTATCTCGCCCCC
ATAGAGATATGTCAGCCGTCGCACAAGAGGGCTACTCTACTCGTTCAATG
AATCGAGAACCTCGGGGACACGCTTACGAGACCTCGCGTGCACTTACAAC
ATGCTCTATCTGGTAGTACTATTTGGAGTGCATGACAAAGAGGGACAGGC
TATAGATCTTGGCATGCTGCATTTTTTGGGCCGCCCGCCCTTTGCCTCCC
TATCGTATACAGCCAACGCCGTGTTTATTGCCATCGGTTCGGAAATCGAG
ATGATTTTGTGCGTGATAACTTTCACCATTTGGTCTGGCATTGCATATCG
GATGCTTTCTTCTCCTGCACTTAATTTGCTTTGTGGGTCTGAAGCTCCTC
GCCTCTAACTAACCTCCCTGTTGCTAGCTCTCGAACGGGCACATTTCCCG
CGAATTCTCCAGGGATAGCGACCAAACCACGACCATGGCCGACCCTGCCG
TTCTCGAGGCAGTCAACCGGGGCAATCCTGTTGTTTTCTTGGACGTCTCC
ATCGCCAACCGCCCGGCCGGACGTATCAAAATGGAACTTTTCAAAGACGT
AGTTCCCAAGACGGTAGAAAACTTCAGACAGTTCTGCACGGGGGAGTATC
GTGAGACCGGATTGCCATTAGGCTACAAAGGATCGCCTTTCCACCGCGTG
ATCAAAGACTTTATGATTCAGGGCGGAGATTTCATGAAAGGCGATGGCTC
GGGTCTCAAATCCATCTACGGAGATAAATTCGCGGACGAAAACTTCGATC
TGCGGCACACGGGGCCCGGCCTGCTCTCCATGGCGAACAGCGGGCCCAAC
ACGAACGGCTGCCAGTTTTTCATCACCTGCGACAAGTGCGAGTGGCTGGA
CGGAAAGCACGTGGTCTTCGGCAAGGTCTTGGACCCGGCCTCCATGCTCA
CAGTCCGCAAGGTGGAGAACACGGACGTGAAACGGCTCAAAGTGGAGGTG
ACTGAGTGCGGCGAATTGTAGGGAAGGGGGTAGGCGTAGGGGCAAAGGAT
GTATATAAAGTGAACACGCACAAAGCAACGACAAAGCTCCGCCGACGGAG
CCCT
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protein sequence of rna9811

>rna9811-protein ID=rna9811-protein|Name=rna9811|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MFFSIVMYHFITREGRRWCQSKVTDSESAREAAKEIQGVLRERGSKYLCV
SVSVRGRDEATREHCSRRKRKAHYLARITTITGQSTEIRHVQAS
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mRNA from alignment at KK037256.1:165487..165876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9811 ID=rna9811|Name=rna9811|organism=Nannochloropsis gaditana|type=mRNA|length=390bp|location=Sequence derived from alignment at KK037256.1:165487..165876+ (Nannochloropsis gaditana)
ATGTTCTTTTCCATCGTCATGTACCATTTCATCACGGTCAGTCCCCGCAA
GGATCTCGAGTAAGGGGGTAGtgcaggagagagagggtaGAAGATGGTGT
CAAAGTAAAGTAACGGACTCGGAGAGCGCCAGGGAAGCAGCCAAGGAAAT
ACAGGGAGTGttgcgagagagagggagcaaaTATCTGTGTGTTTCGGTCT
CCGTAAGAGGGCGTGATGAGGCAACAAGGGAACATTGTTcacgaagaaag
aggaaagcccACTATTTGGCGCGAATAACGACAATTACCGGCCAAAGCAC
AGAGATACGGTTGCAattcatttttccttccgagAGGGCAATGTTGGCAG
GCGTCTGCCGGCGTCTCTCAGGCACGTCCAGGCATCATGA
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Coding sequence (CDS) from alignment at KK037256.1:165487..165876+

>rna9811 ID=rna9811|Name=rna9811|organism=Nannochloropsis gaditana|type=CDS|length=855bp|location=Sequence derived from alignment at KK037256.1:165487..165876+ (Nannochloropsis gaditana)
ATGTTCTTTTCCATCGTCATGTACCATTTCATCACGagagagggtaGAAG
ATGGTGTCAAAGTAAAGTAACGGACTCGGAGAGCGCCAGGGAAGCAGCCA
AGGAAATACAGGGAGTGttgcgagagagagggagcaaaTATCTGTGTGTT
TCGGTCTCCGTAAGAGGGCGTGATGAGGCAACAAGGGAACATTGTTcacg
aagaaagaggaaagcccACTATTTGGCGCGAATAACGACAATTACCGGCC
AAAGCACAGAGATACGGCACGTCCAGGCATCATGAATGTTCTTTTCCATC
GTCATGTACCATTTCATCACGagagagggtaGAAGATGGTGTCAAAGTAA
AGTAACGGACTCGGAGAGCGCCAGGGAAGCAGCCAAGGAAATACAGGGAG
TGttgcgagagagagggagcaaaTATCTGTGTGTTTCGGTCTCCGTAAGA
GGGCGTGATGAGGCAACAAGGGAACATTGTTcacgaagaaagaggaaagc
ccACTATTTGGCGCGAATAACGACAATTACCGGCCAAAGCACAGAGATAC
GGCACGTCCAGGCATCATGAATGTTCTTTTCCATCGTCATGTACCATTTC
ATCACGagagagggtaGAAGATGGTGTCAAAGTAAAGTAACGGACTCGGA
GAGCGCCAGGGAAGCAGCCAAGGAAATACAGGGAGTGttgcgagagagag
ggagcaaaTATCTGTGTGTTTCGGTCTCCGTAAGAGGGCGTGATGAGGCA
ACAAGGGAACATTGTTcacgaagaaagaggaaagcccACTATTTGGCGCG
AATAACGACAATTACCGGCCAAAGCACAGAGATACGGCACGTCCAGGCAT
CATGA
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Synonyms
Publications