rna981, rna981 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna981
Unique Name	rna981
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1502
Alignment location	CM002456.1:895477..898051 +

Link to JBrowse

Properties


Property Name	Value
Product	glycoside hydrolase family 31 protein
Orig transcript id	gnl\|cribi\|Naga_100114g11.2477.mrna
Orig protein id	gnl\|cribi\|Naga_100114g11.2477
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:895477..898051 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100114g11	gene944	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna981	rna981-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29692.1	cds980	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:895477..898051+
coding sequence from alignment at CM002456.1:895477..898051+

mRNA sequence

>rna981 ID=rna981|Name=rna981|organism=Nannochloropsis gaditana|type=mRNA|length=1502bp
CATCAACAGACGTCAAGACAGACGCAATCAGACAGAGGCACCAAAGCAAG
AAATGTGTTTGTTGTGAGAAGATGTGTACGACATCGAATAGGCTACATGC
ATGACAAGCGCGTGGCATGCCTGCAGCTGCAAAAGTGGTAACAGCTACAC
CTTACCGATTCGCACTTGGACCCTGTCCCTCACACAACTGCAGAATTCCT
GGGGAAACAAGTTCTCTGCCACCATGATGTCTGCTCGTCAATCTTTGCGC
ATTGCAGCTCGTGCGTTACGCTGTCCAACCGGCGCGGGGGCTGTCCGTGC
AATCACGACAAATCTAAAGATAACGAGTGTGGCCAAATCCAGCTGGCAAA
AAATGGTCTTTGCTACTGGCACAACCGGTTTGCTTATAGCTTTTGTATGG
AATGCAGAGATAGCTCACACATTGTCAGCCAAGATCGACTGGGAGGGCGC
CGTCCGAAAGGACATCGTGAAGATGATTGAGGACGAGGAGGAGCGCCGCG
GTGACGGGACCAGCATTGGTCCCACCCTCATTCGTTTGGGTTTCCATACG
TCTGGAACCTACGACCGCACGGCCCAAAATGGTGGGAGCAACGGTGCATG
CATGCGATTCATTCCAGAGGCCCATTACGAGGCTAACCAAGGCCTCAGCT
TTCCGCGGGCTCTCCTGGAGCCCCTGCAAGCCAAGTATGGCATGTCCTTC
TCGGACCTGTGGACCTTCGCTGCCAAAGTGGCTGTGGAGGAAGCGGGTGG
GCCAGTCATTCCTTGGCGCCCCGGAAGGACGGACGCTGACGATGGATCGA
AGAGCGTTCCCGATGGCCGCCTCCCTGACGCCACCCAAGGGGCTGCCCAC
CTCCGCTCCATCTTTAACCGCATGGGCTTGAACGACCAAGAGATTGTGGC
CTTGAGTGGCGGCCATAGCATGGGTTTCTGCCATTTGGATACGAGCGGCT
TTGTTGGGCCCTGGACGTTCGCTCCTAATTCCTTTTCGAACGAGTACTTT
CGCTTGCTTGTGGAAGAGAAATGGGCACCCAAGAAGACGCACAAAGGGAA
AATCTGGCGCGGACCCTTGCAGTATGAAGACTCGACGGGTAATCTGATGA
TGCTCCCGACGGACATGGCGCTCATGGAGGATCCTGCTTTCAAGAAATGG
GTCATCGCCTACAAAGAAGACGAGGAGCTCTTCTCTAAGCACTTTGCGGC
GGCCTTTAGCAAGCTGCTGGAGCTGGGTGTACCGTTCCCCAAGGAGAAGA
CAAGTGGAGGCAGCTTTTTGGCTCAAATGAAAAACATGCTAGGACTGTGA
AGGCGGAGTCTGCGGGCTGATTATTATTTAAAGGACTGACGAATTGGAAA
GACAAGCTATGTTTGCTTTACAAGAAAGGTGCGAGACTAAACCACCCAAA
TGTAATTCAATACTTGTACGCACGTTGACTGGATTATGCCAACAGGTCAA
GTTTGGCTTTTAATCAGCAAGAAGAAAGAGAATATGAAACTCCTGCTCGC
AA

protein sequence of rna981

>rna981-protein ID=rna981-protein|Name=rna981|organism=Nannochloropsis gaditana|type=polypeptide|length=836bp
MVVPSSTATAAVLVLAIAVALVIEPPVFLRRWWLEWGLSLEVSTECQTTE
HYAVGTGFDVFWDKGALSVLSSSLPQSSSSASPNNTLWHSYAREKPFILA
ARAVLKHDPIQDGHYFLNQGIRGQTTRQTVESLLYEPNVSLTLLGTLDRP
GGPSIPYRFTLSADKACTDGKLHFAILLGETDESQDDDSDDEIVYAGKDG
PIPSNKAAYYNRVWLRYGSDKEEAFFGFGQHYSRWNLKGHLVPVIISEQG
VGRGLQPATFALNTFLHGVGSAWHTTYVAKPMYLTSRGRALSLVGPKVSF
FDLTLPDIVTAEYWSCRSMRGILYSAASPLETVALLSTETGRMQPLPAWT
QRGVVVGLEGGSEEVERITARLEAHQVPLVAVWLQDWVGTRQDWDGTRLI
WNWEVNRGYYPRWDSFRQRLEASGGVKVLTYINPFLVDVAAANKSFPHTR
NLFAEAVEHGHLIKDAAGQPLLAKSGSIEFGTIDASSPETRAWFKTVIKT
AMIEGAGAGGWMADFGEYVPFNARLHGGRGNAMHNAFPDYWASLQREAIA
EAGGEAAEEVVAFVRSGYMKTPGFAQLYWVGDQLVTWDGHDGIKTVLPAM
LSGGLVGHSLTHSDVGGYTMIDHPVLKFFRPRELLFRWVELGAFAGVLFR
THLGSFMHTPSAQVWDDAETMAHFARFGRIFAHLAPYRSVLMEEAASKGY
PVVRPLFLHYPGDASAYRISQQFLLGPDLLVAPVLNPGQETLRLYLPGGD
RWRHVWTGHIYEGGWLTVSAPMGEIPVFSRQGTPFAELFDSLKEGGCEIM
WENTSIGEESRVICFPSRCDLCLSVVRHEIKPVKSV

mRNA from alignment at CM002456.1:895477..898051+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna981 ID=rna981|Name=rna981|organism=Nannochloropsis gaditana|type=mRNA|length=2575bp|location=Sequence derived from alignment at CM002456.1:895477..898051+ (Nannochloropsis gaditana)
ATGGTGGTCCCTTCAAGCACTGCCACCGCggccgtccttgtccttgctAT
CGCAGTAGCTTTAGTAATAGAGCCACCGGTGTTTTTGCGGCGTTGGTGGC
TTGAGTGGGGTTTGTCTCTGGAGGTTTCTACTGAGTGTCAAACGACGGAA
CACTACGCTGTGGGCACTGGCTTCGACGTTTTCTGGGATAAAGGTGCCCT
CAGCGTCTTGAGCTCCTCACTGCCGcaatcctcgtcgtcggCATCACCGA
ACAACACATTGTGGCATTCATATGCCCGCGAGAAACCTTTTATTCTTGCT
GCGCGGGCTGTGCTAAAGCACGATCCTATCCAGGACGGACACTACTTCCT
CAATCAAGGCATTCGCGGACAAACCACCCGGCAAACTGTGGAATCCCTCC
TTTACGAGCCCAACGTCTCGTTGACCCTACTTGGTACGCTGGATAGGCCG
GGGGGGCCTTCAATCCCGTACCGTTTCACTTTATCAGCGGACAAGGCTTG
CACTGACGGCAAGCTGCATTTTGCTATACTCCTGGGAGAGACGGATGAAA
GCCAAGACGATGATAGCGACGACGAAATAGTCTACGCGGGTAAAGATGGG
CCTATTCCCTCCAACAAAGCGGCCTACTACAACCGGGTCTGGCTTCGGTA
CGGGtctgacaaggaggaggctttcttTGGTTTTGGACAGCACTACTCCC
GATGGAACTTGAAGGGGCACCTGGTCCCCGTGATCATCAGCGAGCAGGGG
GTTGGCCGGGGCCTTCAGCCCGCGACCTTCGCGCTGAATACGTTCCTCCA
CGGCGTAGGCTCCGCCTGGCACACGACCTACGTGGCCAAGCCCATGTACC
TGACAAGCCGCGGACGGGCTCTCTCTCTGGTCGGTCCCAAAGTCTCCTTC
TTCGATCTGACGCTGCCGGACATTGTCACGGCTGAATACTGGTCATGCAG
GAGCATGCGGGGAATTCTGTACAGTGCGGCCTCGCCGCTTGAGACCGTGG
CGCTTCTGAGCACGGAGACGGGCCGAATGCAACCGCTTCCCGCCTGGACT
CAGcgaggggtggtggtggggctggaggggggctcggaggaggtcgagcg
TATTACGGCGAGGCTCGAGGCGCACCAGGTCCCCTTAGTCGCTGTTTGGC
TGCAAGACTGGGTGGGCACCAGGCAGGACTGGGACGGGACGCGGCTGATC
TGGAATTGGGAGGTGAACAGGGGCTACTACCCTCGCTGGGACTCCTTCCG
GCAGCGGCTGGAGGCCTCGGGGGGAGTCAAAGTCTTGACCTACATCAACC
CCTTCCTGGTGGACGTGGCAGCCGCTAACAAGTCCTTTCCCCACACCCGG
AACTTGTTCgccgaggcggtggagcatGGGCATCTGATCAAAGACGCGGC
GGGGCAGCCCTTGCTGGCGAAGAGCGGCAGCATCGAATTCGGCACCATCG
ACGCCAGCAGCCCAGAGACGCGGGCCTGGTTCAAGACTGTGATCAAGACG
GCTATGATAGAGGgcgcaggggcggggggttGGATGGCGGATTTCGGAGA
GTACGTCCCCTTCAATGCCCGGTTAcacggtgggagagggaacgCGATGC
ACAACGCCTTCCCCGACTACTGGGCCTCCTTGCAGCGCGAGGCGAtcgcg
gaggcgggcggcgaggctgcagaggaagtggtggcctTTGTGCGGTCCGG
CTATATGAAGACGCCGGGGTTCGCGCAGCTGTACTGGGTGGGGGACCAGC
TGGTCACGTGGGACGGGCACGACGGCATCAAGACGGTGCTGCCGGCCATG
CTGTCGGGGGGGCTGGTCGGCCACAGCCTGACTCACTCAGACGTGGGCGG
GTACACAATGATCGATCATCCTGTGCTCAAGTTCTTCCGCCCCCGCGAAC
TCTTGTTCCGGTGGGTGGAGCTGGGCGCCTTCGCCGGGGTCCTCTTCCGC
ACTCACCTGGGAAGCTTCATGCATACCCCCAGCGCGCAGGTCTGGGACGA
CGCAGAGACGATGGCTCACTTTGCTCGCTTTGGTCGAATCTTCGCCCATC
TAGCGCCTTACCGCAGCGtcctgatggaggaggcggccagcaAGGGCTAC
CCAGTGGTCaggcctctcttcctccactacCCCGGGGACGCCAGCGCCTA
CCGGATCAGCCAGCAGTTCCTCCTGGGGCCCGACCTTCTGGTCGCTCCCG
TCCTAAACCCTGGGCAGGAGACGTTGCGCCTGTAcctgccggggggggat
cggTGGCGGCACGTGTGGACGGGGCACATTTACGAAGGAGGATGGCTCAC
GGTCTCTGCCCCCATGGGCGAGATCCCGGTCTTCAGCCGCCAAGGCACGC
CTTTTGCGGAGCTCTTCGACAGCCTTGTAGAGGCGTGAACCGGGCATTGT
GACAAAGCTTATGGCACTCGGAACTGTCGGCTTCACTCagaaagagggag
gttgTGAGATAATGTGGGAAAATACGAGCATCGGAGAAGAAAGTCGTGTT
ATATGCTTTCCGTCTCGATGCGATCTCTGTTTGTCCGTAGTAAGGCACGA
GATAAAACCTGTAAAATCTGTATGA

Coding sequence (CDS) from alignment at CM002456.1:895477..898051+

>rna981 ID=rna981|Name=rna981|organism=Nannochloropsis gaditana|type=CDS|length=5022bp|location=Sequence derived from alignment at CM002456.1:895477..898051+ (Nannochloropsis gaditana)
ATGGTGGTCCCTTCAAGCACTGCCACCGCggccgtccttgtccttgctAT
CGCAGTAGCTTTAGTAATAGAGCCACCGGTGTTTTTGCGGCGTTGGTGGC
TTGAGTGGGGTTTGTCTCTGGAGGTTTCTACTGAGTGTCAAACGACGGAA
CACTACGCTGTGGGCACTGGCTTCGACGTTTTCTGGGATAAAGGTGCCCT
CAGCGTCTTGAGCTCCTCACTGCCGcaatcctcgtcgtcggCATCACCGA
ACAACACATTGTGGCATTCATATGCCCGCGAGAAACCTTTTATTCTTGCT
GCGCGGGCTGTGCTAAAGCACGATCCTATCCAGGACGGACACTACTTCCT
CAATCAAGGCATTCGCGGACAAACCACCCGGCAAACTGTGGAATCCCTCC
TTTACGAGCCCAACGTCTCGTTGACCCTACTTGGTACGCTGGATAGGCCG
GGGGGGCCTTCAATCCCGTACCGTTTCACTTTATCAGCGGACAAGGCTTG
CACTGACGGCAAGCTGCATTTTGCTATACTCCTGGGAGAGACGGATGAAA
GCCAAGACGATGATAGCGACGACGAAATAGTCTACGCGGGTAAAGATGGG
CCTATTCCCTCCAACAAAGCGGCCTACTACAACCGGGTCTGGCTTCGGTA
CGGGtctgacaaggaggaggctttcttTGGTTTTGGACAGCACTACTCCC
GATGGAACTTGAAGGGGCACCTGGTCCCCGTGATCATCAGCGAGCAGGGG
GTTGGCCGGGGCCTTCAGCCCGCGACCTTCGCGCTGAATACGTTCCTCCA
CGGCGTAGGCTCCGCCTGGCACACGACCTACGTGGCCAAGCCCATGTACC
TGACAAGCCGCGGACGGGCTCTCTCTCTGGTCGGTCCCAAAGTCTCCTTC
TTCGATCTGACGCTGCCGGACATTGTCACGGCTGAATACTGGTCATGCAG
GAGCATGCGGGGAATTCTGTACAGTGCGGCCTCGCCGCTTGAGACCGTGG
CGCTTCTGAGCACGGAGACGGGCCGAATGCAACCGCTTCCCGCCTGGACT
CAGcgaggggtggtggtggggctggaggggggctcggaggaggtcgagcg
TATTACGGCGAGGCTCGAGGCGCACCAGGTCCCCTTAGTCGCTGTTTGGC
TGCAAGACTGGGTGGGCACCAGGCAGGACTGGGACGGGACGCGGCTGATC
TGGAATTGGGAGGTGAACAGGGGCTACTACCCTCGCTGGGACTCCTTCCG
GCAGCGGCTGGAGGCCTCGGGGGGAGTCAAAGTCTTGACCTACATCAACC
CCTTCCTGGTGGACGTGGCAGCCGCTAACAAGTCCTTTCCCCACACCCGG
AACTTGTTCgccgaggcggtggagcatGGGCATCTGATCAAAGACGCGGC
GGGGCAGCCCTTGCTGGCGAAGAGCGGCAGCATCGAATTCGGCACCATCG
ACGCCAGCAGCCCAGAGACGCGGGCCTGGTTCAAGACTGTGATCAAGACG
GCTATGATAGAGGgcgcaggggcggggggttGGATGGCGGATTTCGGAGA
GTACGTCCCCTTCAATGCCCGGTTAcacggtgggagagggaacgCGATGC
ACAACGCCTTCCCCGACTACTGGGCCTCCTTGCAGCGCGAGGCGAtcgcg
gaggcgggcggcgaggctgcagaggaagtggtggcctTTGTGCGGTCCGG
CTATATGAAGACGCCGGGGTTCGCGCAGCTGTACTGGGTGGGGGACCAGC
TGGTCACGTGGGACGGGCACGACGGCATCAAGACGGTGCTGCCGGCCATG
CTGTCGGGGGGGCTGGTCGGCCACAGCCTGACTCACTCAGACGTGGGCGG
GTACACAATGATCGATCATCCTGTGCTCAAGTTCTTCCGCCCCCGCGAAC
TCTTGTTCCGGTGGGTGGAGCTGGGCGCCTTCGCCGGGGTCCTCTTCCGC
ACTCACCTGGGAAGCTTCATGCATACCCCCAGCGCGCAGGTCTGGGACGA
CGCAGAGACGATGGCTCACTTTGCTCGCTTTGGTCGAATCTTCGCCCATC
TAGCGCCTTACCGCAGCGtcctgatggaggaggcggccagcaAGGGCTAC
CCAGTGGTCaggcctctcttcctccactacCCCGGGGACGCCAGCGCCTA
CCGGATCAGCCAGCAGTTCCTCCTGGGGCCCGACCTTCTGGTCGCTCCCG
TCCTAAACCCTGGGCAGGAGACGTTGCGCCTGTAcctgccggggggggat
cggTGGCGGCACGTGTGGACGGGGCACATTTACGAAGGAGGATGGCTCAC
GGTCTCTGCCCCCATGGGCGAGATCCCGGTCTTCAGCCGCCAAGGCACGC
CTTTTGCGGAGCTCTTCGACAGCCTTaaagagggaggttgTGAGATAATG
TGGGAAAATACGAGCATCGGAGAAGAAAGTCGTGTTATATGCTTTCCGTC
TCGATGCGATCTCTGTTTGTCCGTAGTAAGGCACGAGATAAAACCTGTAA
AATCTGTATGAATGGTGGTCCCTTCAAGCACTGCCACCGCggccgtcctt
gtccttgctATCGCAGTAGCTTTAGTAATAGAGCCACCGGTGTTTTTGCG
GCGTTGGTGGCTTGAGTGGGGTTTGTCTCTGGAGGTTTCTACTGAGTGTC
AAACGACGGAACACTACGCTGTGGGCACTGGCTTCGACGTTTTCTGGGAT
AAAGGTGCCCTCAGCGTCTTGAGCTCCTCACTGCCGcaatcctcgtcgtc
ggCATCACCGAACAACACATTGTGGCATTCATATGCCCGCGAGAAACCTT
TTATTCTTGCTGCGCGGGCTGTGCTAAAGCACGATCCTATCCAGGACGGA
CACTACTTCCTCAATCAAGGCATTCGCGGACAAACCACCCGGCAAACTGT
GGAATCCCTCCTTTACGAGCCCAACGTCTCGTTGACCCTACTTGGTACGC
TGGATAGGCCGGGGGGGCCTTCAATCCCGTACCGTTTCACTTTATCAGCG
GACAAGGCTTGCACTGACGGCAAGCTGCATTTTGCTATACTCCTGGGAGA
GACGGATGAAAGCCAAGACGATGATAGCGACGACGAAATAGTCTACGCGG
GTAAAGATGGGCCTATTCCCTCCAACAAAGCGGCCTACTACAACCGGGTC
TGGCTTCGGTACGGGtctgacaaggaggaggctttcttTGGTTTTGGACA
GCACTACTCCCGATGGAACTTGAAGGGGCACCTGGTCCCCGTGATCATCA
GCGAGCAGGGGGTTGGCCGGGGCCTTCAGCCCGCGACCTTCGCGCTGAAT
ACGTTCCTCCACGGCGTAGGCTCCGCCTGGCACACGACCTACGTGGCCAA
GCCCATGTACCTGACAAGCCGCGGACGGGCTCTCTCTCTGGTCGGTCCCA
AAGTCTCCTTCTTCGATCTGACGCTGCCGGACATTGTCACGGCTGAATAC
TGGTCATGCAGGAGCATGCGGGGAATTCTGTACAGTGCGGCCTCGCCGCT
TGAGACCGTGGCGCTTCTGAGCACGGAGACGGGCCGAATGCAACCGCTTC
CCGCCTGGACTCAGcgaggggtggtggtggggctggaggggggctcggag
gaggtcgagcgTATTACGGCGAGGCTCGAGGCGCACCAGGTCCCCTTAGT
CGCTGTTTGGCTGCAAGACTGGGTGGGCACCAGGCAGGACTGGGACGGGA
CGCGGCTGATCTGGAATTGGGAGGTGAACAGGGGCTACTACCCTCGCTGG
GACTCCTTCCGGCAGCGGCTGGAGGCCTCGGGGGGAGTCAAAGTCTTGAC
CTACATCAACCCCTTCCTGGTGGACGTGGCAGCCGCTAACAAGTCCTTTC
CCCACACCCGGAACTTGTTCgccgaggcggtggagcatGGGCATCTGATC
AAAGACGCGGCGGGGCAGCCCTTGCTGGCGAAGAGCGGCAGCATCGAATT
CGGCACCATCGACGCCAGCAGCCCAGAGACGCGGGCCTGGTTCAAGACTG
TGATCAAGACGGCTATGATAGAGGgcgcaggggcggggggttGGATGGCG
GATTTCGGAGAGTACGTCCCCTTCAATGCCCGGTTAcacggtgggagagg
gaacgCGATGCACAACGCCTTCCCCGACTACTGGGCCTCCTTGCAGCGCG
AGGCGAtcgcggaggcgggcggcgaggctgcagaggaagtggtggcctTT
GTGCGGTCCGGCTATATGAAGACGCCGGGGTTCGCGCAGCTGTACTGGGT
GGGGGACCAGCTGGTCACGTGGGACGGGCACGACGGCATCAAGACGGTGC
TGCCGGCCATGCTGTCGGGGGGGCTGGTCGGCCACAGCCTGACTCACTCA
GACGTGGGCGGGTACACAATGATCGATCATCCTGTGCTCAAGTTCTTCCG
CCCCCGCGAACTCTTGTTCCGGTGGGTGGAGCTGGGCGCCTTCGCCGGGG
TCCTCTTCCGCACTCACCTGGGAAGCTTCATGCATACCCCCAGCGCGCAG
GTCTGGGACGACGCAGAGACGATGGCTCACTTTGCTCGCTTTGGTCGAAT
CTTCGCCCATCTAGCGCCTTACCGCAGCGtcctgatggaggaggcggcca
gcaAGGGCTACCCAGTGGTCaggcctctcttcctccactacCCCGGGGAC
GCCAGCGCCTACCGGATCAGCCAGCAGTTCCTCCTGGGGCCCGACCTTCT
GGTCGCTCCCGTCCTAAACCCTGGGCAGGAGACGTTGCGCCTGTAcctgc
cggggggggatcggTGGCGGCACGTGTGGACGGGGCACATTTACGAAGGA
GGATGGCTCACGGTCTCTGCCCCCATGGGCGAGATCCCGGTCTTCAGCCG
CCAAGGCACGCCTTTTGCGGAGCTCTTCGACAGCCTTaaagagggaggtt
gTGAGATAATGTGGGAAAATACGAGCATCGGAGAAGAAAGTCGTGTTATA
TGCTTTCCGTCTCGATGCGATCTCTGTTTGTCCGTAGTAAGGCACGAGAT
AAAACCTGTAAAATCTGTATGA

Synonyms

Publications