rna9800, rna9800 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9800
Unique Name	rna9800
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1320
Alignment location	KK037256.1:144145..145739 +

Link to JBrowse

Properties


Property Name	Value
Product	Aminotransferase, class IV
Orig transcript id	gnl\|cribi\|Naga_100156g6.1707.mrna
Orig protein id	gnl\|cribi\|Naga_100156g6.1707
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:144145..145739 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100156g6	gene9515	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9800	rna9800-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20900.1	cds9769	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:144145..145739+
coding sequence from alignment at KK037256.1:144145..145739+

mRNA sequence

>rna9800 ID=rna9800|Name=rna9800|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
ATGGTTACAATAATAGACCACAGCTGCAGCACCAGCAGTGATCAAATGGT
GCCCTATGTCAGCCCCTTGCCTCTGACCAACGGAGTCTTGGCCGACCAAA
GTGCCAGCCGTCTTGCCCCAACGGCAGGGAGACAGTCGAAATCGATTAGC
AAACGATTAAACGCTTTGGCCACCGCAACTATGGAACATAGTAGCCGAAG
AAAAGAGGAGCACTTTGGACTAAATACTGCGACCGATGCCCCAGACGAGG
GAAAGGAAAAGGTGAGTGCCATCCCCGGGTCGCCCGTGTTTGCCGGTCGA
GCAGGGCAAGGGCACTCTCCTCACACCCCTCGGAGGGACGATACGAGTGC
TACACTGGTGGGGCAGAGCGACGAAAATGGAGTGGCGGGGAGGACAGGAG
AGCGTGCATCCGAGGAGATGGAGGAGGCGGCGGGTCTGGTCAAGACGGAC
GCCGCCGTACACCACGCAAAAGCAGGGAATACCGAGGTTGCAAAAGGCGC
TTTGGACAAGTCCAGGTTATCTCGGTGGAAAAATGCGACCACGAAATCCG
CAACGGGGAAGTCTTCCCTCGGCGGCACCACTGGCAGTGCGGATTCTGGG
GATGGGAGTGAGGTTCCGAGCCCCCTTCTTCTCATGGCCACCACGACCAA
AAAACGCCGCCGTAAAACCACCAATGCTGGCCGTGGCAAACGTTTGGACT
CTAGGCGGCGCGCGGGGTCCCATGGCTGTCAGGTGCACACTAGTAAAGAG
GAATGTGCTGCGGCGATGGCGGCTCTAGGAACGACCGTGGGGGAGGAAAA
GAAGGTGGCCATGTGCTGCACGCCTAATGGCCGGGAGGGCGACAGCCGGG
CCTGCAAGTGTAAAGGGCGTCGGAAATGTCTGATTTGTCGGGGCTGCGCG
GGCGGGCATTGCGCGTGTGTGGATTGCCTGTGTGAGACCTGCCGAAGTCG
TGAGCACCAGCGACTGGCCAAGGAGAAGACGCTGCGGGAGACGGAGGAGC
GCGAAGTCGAGCTCGCGAAAGAACAGGAGCGTATCTTCCAAGAGGCTCGG
GAACGACAGCAGATGAGAGATGCGGGGGTGGAGGTAGCTCCGCCCACATC
ACCATTGCGTTCACCCATCGCTCACGGCCAGTGCGTCCCAGACGTGCATT
ACGAGGCGAGAACTACCGCTGAGACGTCTGGTGGAAAGGGTACCAAGGCG
GCCGAAGTCACTGGATCGGGCACACCACCTGCGCAAGGTTCGCGGGAGAG
GGGGAAAAACCTCGACTCGCCTCCCTTTTTGATGTCATGCGTCCCGGCTT
TGGTTTCCTCCGTAGGATGA

protein sequence of rna9800

>rna9800-protein ID=rna9800-protein|Name=rna9800|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MGMLSAKKARRSSPPGPLRPPMMDLDDAFYAMQQKLPRSAFDFLAFYSSV
LGGIVTDPALMTVPMDEHMVHRGHAVFDTANVSRGYCYGLDFHLERLLRS
AGLARIHPAFTKEELRHIILSTVAASQVRDDIFVRFWMTSGRGNFAISAK
ETTSSGFFVMVHRYPSKGDLKLQGITEHVVEDIPLKNPLLATMKSTNYLI
NALVCQAAEDKGGFLGIQFEPSGALAESSIGNVAILTQEGVLRTPPFERI
LAGTTVKRLWELAVDSLLPQGIVSGVEYHQITLAELLSAKEAFSLGGGSV
LPIVRIDGHVIGDGKPGPVFKELDALLVRDMDVNFLDPVPYQEYTQGGLV
QRGWRGLQRWRRADGYLMGLVLIALPLAFAVGKIRGGPTFML

mRNA from alignment at KK037256.1:144145..145739+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9800 ID=rna9800|Name=rna9800|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp|location=Sequence derived from alignment at KK037256.1:144145..145739+ (Nannochloropsis gaditana)
ATGGGAATGCTTTCTGCCAAAAAAGCGCGGCGGAGCTCGCCCCCGGGGCC
TCTTCGACCCCCTATGATGGACTTAGACGATGCTTTTTACGCCATGCAGC
AAAAATTACCCAGAAGTGCTTTTGATTTTCTGGCATTCTACAGCTCCGTG
CTCGGCGGTATCGTCACTGACCCGGCCCTAATGACAGTTCCCATGGACGA
GCACATGGTGCATCGAGGACATGCCGTCTTCGATACTGCTAATGTGTCGC
GTGGCTATTGCTACGGCCTGGATTTCCATTTGGAAAGGTTGTTACGGTCT
GCGGGTTTGGCACGCATTCATCCGGCCTTCACGAAGGAAGAACTCCGACA
CATCATACTCAGCACTGTGGCGGCCAGTCAAGTGCGAGACGATATCTTTG
TCCGTTTTTGGATGACATCAGGTGCAGTAGATGCCGAATAAGCgaacgga
gggaaggtagcGTGTCTCAACTATTTGAACGTCTTCCCTTTGGCCGATCG
GACGccccccatgtcctcctcacAGGGCGTGGGAACTTCGCTATCAGCGC
GAAAGAGACGACAAGCAGCGGTTTCTTTGTCATGGTCCATCGCTATCCCT
CCAAAGGTGACCTCAAGCTGCAGGGGATCACCGAgcatgtggtggaggac
atccCGCTCAAGAACCCCTTGTTGGCGACCATGAAGTCGACCAACTACCT
TATCAACGCCCTCGTCTGCCAAGCCGCCGAGGACAAGGTGATTGCTTGCA
CTCTGTAAACCAATGTTGCCTTTCATACGGCCTCGAATTGGCCGTCTGAC
TGCCCGGagttttcttctttcccccatgCCAAAGGCCACTTTGATCTTGA
AGAAACGCCCCCGAGGCCCCTTTCAGAATGGGAATGCCTATCTCACGCTT
GCCTTCCATACATATCCTGACCACGGATAGGGAGGATTCTTGGGCATCCA
ATTCGAGCCCTCAGGGGCTTTGGCCGAAAGCTCCATCGGCAATGTCGCGA
TCCTCACACAGGAAGGGGTGCTACGCACACCCCCCTTCGAGCGTATACTG
GCCGGCACCACCGTGAAAAGGTTGTGGGAACTGGCCGTAGATTCGTTACT
CCCGCAAGGTAGGCGTGTCGGGAGCGGTATGTTTCCACAAGATTGGACTT
TTGAAGCAGTCTTCCTTCTATGCCCGCCCCCTTAAGTCCTGTGCTCCCCC
TTATTGTTCTCTTATCACCGCACACAGGCATCGTGTCTGGTGTGGAATAC
CATCAAATCACCCTTGCGGAGCTCCTCTCTGCCAAGGAGGCCTTcagcct
ggggggggggtctgTGCTGCCCATCGTGCGCATTGACGGCCATGTGATAG
GGGACGGGAAGCCGGGGCCCGTTTTCAAGGAACTTGACGCCCTGCTTGTC
CGTGACATGGACGTGAATTTCCTTGACCCTGTGCCTTACCAAGAGTATAC
CCAAGGGGGCCTGGTGCaaagaggatggcgagggctGCAGCGATGGCGGC
GGGCGGACGGCTACCTGATGGGCCTGGTCTTGATCGCCTTGCCCCTCGCG
TTCGCCGTGGGGAAAATACGCGGAGGCCCAACTTTTATGCTTTGA

Coding sequence (CDS) from alignment at KK037256.1:144145..145739+

>rna9800 ID=rna9800|Name=rna9800|organism=Nannochloropsis gaditana|type=CDS|length=4716bp|location=Sequence derived from alignment at KK037256.1:144145..145739+ (Nannochloropsis gaditana)
ATGGGAATGCTTTCTGCCAAAAAAGCGCGGCGGAGCTCGCCCCCGGGGCC
TCTTCGACCCCCTATGATGGACTTAGACGATGCTTTTTACGCCATGCAGC
AAAAATTACCCAGAAGTGCTTTTGATTTTCTGGCATTCTACAGCTCCGTG
CTCGGCGGTATCGTCACTGACCCGGCCCTAATGACAGTTCCCATGGACGA
GCACATGGTGCATCGAGGACATGCCGTCTTCGATACTGCTAATGTGTCGC
GTGGCTATTGCTACGGCCTGGATTTCCATTTGGAAAGGTTGTTACGGTCT
GCGGGTTTGGCACGCATTCATCCGGCCTTCACGAAGGAAGAACTCCGACA
CATCATACTCAGCACTGTGGCGGCCAGTCAAGTGCGAGACGATATCTTTG
TCCGTTTTTGGATGACATCAGGGCGTGGGAACTTCGCTATCAGCGCGAAA
GAGACGACAAGCAGCGGTTTCTTTGTCATGGTCCATCGCTATCCCTCCAA
AGGTGACCTCAAGCTGCAGGGGATCACCGAgcatgtggtggaggacatcc
CGCTCAAGAACCCCTTGTTGGCGACCATGAAGTCGACCAACTACCTTATC
AACGCCCTCGTCTGCCAAGCCGCCGAGGACAAGGGAGGATTCTTGGGCAT
CCAATTCGAGCCCTCAGGGGCTTTGGCCGAAAGCTCCATCGGCAATGTCG
CGATCCTCACACAGGAAGGGGTGCTACGCACACCCCCCTTCGAGCGTATA
CTGGCCGGCACCACCGTGAAAAGGTTGTGGGAACTGGCCGTAGATTCGTT
ACTCCCGCAAGGCATCGTGTCTGGTGTGGAATACCATCAAATCACCCTTG
CGGAGCTCCTCTCTGCCAAGGAGGCCTTcagcctggggggggggtctgTG
CTGCCCATCGTGCGCATTGACGGCCATGTGATAGGGGACGGGAAGCCGGG
GCCCGTTTTCAAGGAACTTGACGCCCTGCTTGTCCGTGACATGGACGTGA
ATTTCCTTGACCCTGTGCCTTACCAAGAGTATACCCAAGGGGGCCTGGTG
CaaagaggatggcgagggctGCAGCGATGGCGGCGGGCGGACGGCTACCT
GATGGGCCTGGTCTTGATCGCCTTGCCCCTCGCGTTCGCCGTGGGGAAAA
TACGCGGAGGCCCAACTTTTATGCTTTGAATGGGAATGCTTTCTGCCAAA
AAAGCGCGGCGGAGCTCGCCCCCGGGGCCTCTTCGACCCCCTATGATGGA
CTTAGACGATGCTTTTTACGCCATGCAGCAAAAATTACCCAGAAGTGCTT
TTGATTTTCTGGCATTCTACAGCTCCGTGCTCGGCGGTATCGTCACTGAC
CCGGCCCTAATGACAGTTCCCATGGACGAGCACATGGTGCATCGAGGACA
TGCCGTCTTCGATACTGCTAATGTGTCGCGTGGCTATTGCTACGGCCTGG
ATTTCCATTTGGAAAGGTTGTTACGGTCTGCGGGTTTGGCACGCATTCAT
CCGGCCTTCACGAAGGAAGAACTCCGACACATCATACTCAGCACTGTGGC
GGCCAGTCAAGTGCGAGACGATATCTTTGTCCGTTTTTGGATGACATCAG
GGCGTGGGAACTTCGCTATCAGCGCGAAAGAGACGACAAGCAGCGGTTTC
TTTGTCATGGTCCATCGCTATCCCTCCAAAGGTGACCTCAAGCTGCAGGG
GATCACCGAgcatgtggtggaggacatccCGCTCAAGAACCCCTTGTTGG
CGACCATGAAGTCGACCAACTACCTTATCAACGCCCTCGTCTGCCAAGCC
GCCGAGGACAAGGGAGGATTCTTGGGCATCCAATTCGAGCCCTCAGGGGC
TTTGGCCGAAAGCTCCATCGGCAATGTCGCGATCCTCACACAGGAAGGGG
TGCTACGCACACCCCCCTTCGAGCGTATACTGGCCGGCACCACCGTGAAA
AGGTTGTGGGAACTGGCCGTAGATTCGTTACTCCCGCAAGGCATCGTGTC
TGGTGTGGAATACCATCAAATCACCCTTGCGGAGCTCCTCTCTGCCAAGG
AGGCCTTcagcctggggggggggtctgTGCTGCCCATCGTGCGCATTGAC
GGCCATGTGATAGGGGACGGGAAGCCGGGGCCCGTTTTCAAGGAACTTGA
CGCCCTGCTTGTCCGTGACATGGACGTGAATTTCCTTGACCCTGTGCCTT
ACCAAGAGTATACCCAAGGGGGCCTGGTGCaaagaggatggcgagggctG
CAGCGATGGCGGCGGGCGGACGGCTACCTGATGGGCCTGGTCTTGATCGC
CTTGCCCCTCGCGTTCGCCGTGGGGAAAATACGCGGAGGCCCAACTTTTA
TGCTTTGAATGGGAATGCTTTCTGCCAAAAAAGCGCGGCGGAGCTCGCCC
CCGGGGCCTCTTCGACCCCCTATGATGGACTTAGACGATGCTTTTTACGC
CATGCAGCAAAAATTACCCAGAAGTGCTTTTGATTTTCTGGCATTCTACA
GCTCCGTGCTCGGCGGTATCGTCACTGACCCGGCCCTAATGACAGTTCCC
ATGGACGAGCACATGGTGCATCGAGGACATGCCGTCTTCGATACTGCTAA
TGTGTCGCGTGGCTATTGCTACGGCCTGGATTTCCATTTGGAAAGGTTGT
TACGGTCTGCGGGTTTGGCACGCATTCATCCGGCCTTCACGAAGGAAGAA
CTCCGACACATCATACTCAGCACTGTGGCGGCCAGTCAAGTGCGAGACGA
TATCTTTGTCCGTTTTTGGATGACATCAGGGCGTGGGAACTTCGCTATCA
GCGCGAAAGAGACGACAAGCAGCGGTTTCTTTGTCATGGTCCATCGCTAT
CCCTCCAAAGGTGACCTCAAGCTGCAGGGGATCACCGAgcatgtggtgga
ggacatccCGCTCAAGAACCCCTTGTTGGCGACCATGAAGTCGACCAACT
ACCTTATCAACGCCCTCGTCTGCCAAGCCGCCGAGGACAAGGGAGGATTC
TTGGGCATCCAATTCGAGCCCTCAGGGGCTTTGGCCGAAAGCTCCATCGG
CAATGTCGCGATCCTCACACAGGAAGGGGTGCTACGCACACCCCCCTTCG
AGCGTATACTGGCCGGCACCACCGTGAAAAGGTTGTGGGAACTGGCCGTA
GATTCGTTACTCCCGCAAGGCATCGTGTCTGGTGTGGAATACCATCAAAT
CACCCTTGCGGAGCTCCTCTCTGCCAAGGAGGCCTTcagcctgggggggg
ggtctgTGCTGCCCATCGTGCGCATTGACGGCCATGTGATAGGGGACGGG
AAGCCGGGGCCCGTTTTCAAGGAACTTGACGCCCTGCTTGTCCGTGACAT
GGACGTGAATTTCCTTGACCCTGTGCCTTACCAAGAGTATACCCAAGGGG
GCCTGGTGCaaagaggatggcgagggctGCAGCGATGGCGGCGGGCGGAC
GGCTACCTGATGGGCCTGGTCTTGATCGCCTTGCCCCTCGCGTTCGCCGT
GGGGAAAATACGCGGAGGCCCAACTTTTATGCTTTGAATGGGAATGCTTT
CTGCCAAAAAAGCGCGGCGGAGCTCGCCCCCGGGGCCTCTTCGACCCCCT
ATGATGGACTTAGACGATGCTTTTTACGCCATGCAGCAAAAATTACCCAG
AAGTGCTTTTGATTTTCTGGCATTCTACAGCTCCGTGCTCGGCGGTATCG
TCACTGACCCGGCCCTAATGACAGTTCCCATGGACGAGCACATGGTGCAT
CGAGGACATGCCGTCTTCGATACTGCTAATGTGTCGCGTGGCTATTGCTA
CGGCCTGGATTTCCATTTGGAAAGGTTGTTACGGTCTGCGGGTTTGGCAC
GCATTCATCCGGCCTTCACGAAGGAAGAACTCCGACACATCATACTCAGC
ACTGTGGCGGCCAGTCAAGTGCGAGACGATATCTTTGTCCGTTTTTGGAT
GACATCAGGGCGTGGGAACTTCGCTATCAGCGCGAAAGAGACGACAAGCA
GCGGTTTCTTTGTCATGGTCCATCGCTATCCCTCCAAAGGTGACCTCAAG
CTGCAGGGGATCACCGAgcatgtggtggaggacatccCGCTCAAGAACCC
CTTGTTGGCGACCATGAAGTCGACCAACTACCTTATCAACGCCCTCGTCT
GCCAAGCCGCCGAGGACAAGGGAGGATTCTTGGGCATCCAATTCGAGCCC
TCAGGGGCTTTGGCCGAAAGCTCCATCGGCAATGTCGCGATCCTCACACA
GGAAGGGGTGCTACGCACACCCCCCTTCGAGCGTATACTGGCCGGCACCA
CCGTGAAAAGGTTGTGGGAACTGGCCGTAGATTCGTTACTCCCGCAAGGC
ATCGTGTCTGGTGTGGAATACCATCAAATCACCCTTGCGGAGCTCCTCTC
TGCCAAGGAGGCCTTcagcctggggggggggtctgTGCTGCCCATCGTGC
GCATTGACGGCCATGTGATAGGGGACGGGAAGCCGGGGCCCGTTTTCAAG
GAACTTGACGCCCTGCTTGTCCGTGACATGGACGTGAATTTCCTTGACCC
TGTGCCTTACCAAGAGTATACCCAAGGGGGCCTGGTGCaaagaggatggc
gagggctGCAGCGATGGCGGCGGGCGGACGGCTACCTGATGGGCCTGGTC
TTGATCGCCTTGCCCCTCGCGTTCGCCGTGGGGAAAATACGCGGAGGCCC
AACTTTTATGCTTTGA

Synonyms

Publications