rna9768, rna9768 (mRNA) Nannochloropsis gaditana

Overview
Namerna9768
Unique Namerna9768
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1524
Alignment locationKK037256.1:61417..62502 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100061g27.8574.mrna
Orig protein idgnl|cribi|Naga_100061g27.8574
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:61417..62502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100061g27gene9484Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9768rna9768-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20941.1cds9737Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9768 ID=rna9768|Name=rna9768|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
ACAGTATACGTTTTCAACAGGCATGTGAACACTGAAATTGTGGGTGTAGT
CATATTCTCAGGGAATCTTTCGATCTCGGGTAGAAAATTATTACGAGATA
CACAAGCGTGGGGACATTCGAGTCTATGATGCAAGCACCGCAAAATTGCG
TACATGTCTCCATTCTTGCTGTTTGTTCCTTGTATAGAACCTTACCCCGC
CTGACTTATCCGCTCTTCACCAATTTTACTGACGCAGTGACTGAATTACG
TCGAAATTTTGTTGCCCGACTTAAAATTCTCGACCCGCTGGTGGAGTCGA
ACCTGATTATCCATCTTTTCGCCATCTCCCTCCTTCTATGGATCTGGGGC
ATCTCGCTGGCTCGCGCCCATACGCTTACCTTGTTTTCCTTCCATCCAGT
CTTCATGTCAATGGGATGTGTTCTATTCATGACCGAAGGCATTCTGGCCT
ATCGCAACCACGCATGCTTTCAATTTCTCTCACCAATTATGCGAAATTCT
GCTCGCGTCAAGCTGCAAAATATTCACCGTGGATTTCACATTTTAGCAGC
CGTTTGCGTGGTTATGGGCATGGCATTTATTTTTAGCAACAAAGTCAAGA
AGCACCGCACAATTTTGCCCACGTCTATTCACGCCGCCCTTGGCTTCCTT
GTTTGCGCACTTATGGTCTTACAAATGATTGCGGGTCTTGAAAAGCTGGA
TGCCCAACGCTCTGGAGTTATTGGGGGGAATGGACGAGATGGGGGAGGAG
TTCTGTATCGATGGCATGGAAAGGCGGGTCTCATACTGTATGACGTGGCT
ATGGCGACAGTGGCAACAGGACTCGTTAAGAGCCTTGGTTTCGGATTAAT
TACCTTTCTTATGGTGCTTCATGTTTGCTTGGTCTGGTTCATGGTGCATC
TGCAAATGGGAAGCAAACCTTTCAGACCGACTGAAGATGGAGGTTTAACC
GATAGAGAATTGATAGAATTACGGAGGGAGGGAGGATGTGATGGGGGTGA
TGAGAAAGGCGAGAAAGGGAGAGGATCGAAAGGTAATTTTGTGCCAAGAA
AAGATAGCGGGGATTTCACGGATCCAATATAATCTGAGGAGAAATCAAAT
GTATGAGTATTCGCTACGAGACGAAAAAAAAGAGACACAATCATATTTAT
TGCATCACGAGGTAAATGCGTCCTGCTAGAATTAAGTCTAATCGTTAGCA
TAGATATTGCCTTCTACATCTTTCAGGTACATGTTAATACTGATTTGACG
ATGAGGTCTGCATCTGCTAAGTGAAAGAAATAGGTCAATTGACTTCGTGA
TTATGTGATATCATAAGCCATTCTCTTTGTACCCATGAACGTCCTACCCT
GTCGTCACATTTTGCAGACTGCCTTTTTAATTCTTTGCTAGCTCCATTGG
ACAGTAATGATGGCTTAAGGCTCCAACATGCTATAATCTTGCACTATGGT
ATAAGAAAATACAAACAACCAATATATTCTGTTCAGAATTCTCGTTGCTT
TGGATTTTAGCAGATCACATGAAA
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protein sequence of rna9768

>rna9768-protein ID=rna9768-protein|Name=rna9768|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MNLALCLARRLTANARNKGNFPFYLPCHLSRTMRRTLLLMKTVALPLNVT
TRKTTQQEAVPWYRRQYKGAKAQHLWQAGWGISLLLVFVGLPLVGATVQS
HLKVKREKRRAIMNDAEREEFLRDLYELRFKSRNGRLTQPLWRHFEETIN
LKRQRRRKERWPRRNQASGILYMRVGRHMEVTCTFEAKQDQTRTRQLPER
SIDLVERLRHVRWSRRNEGASREIKKQLLRQTTVTE
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mRNA from alignment at KK037256.1:61417..62502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9768 ID=rna9768|Name=rna9768|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp|location=Sequence derived from alignment at KK037256.1:61417..62502+ (Nannochloropsis gaditana)
ATGAACCTAGCCTTGTGAAGGGAGCTCGACGCCGGACGAGCCCGTCATAT
AAAATGCAGAAAGCAGCGAACATGCCTCCCTTGCGTGCGGCAGCCCTACC
ATACCTCCCCCGTCTCGACGCACCACAGGCACCCGACACGGAGTTTGTGC
CAGTTCTACTTTTTTGAGATTTTTGATCTGGTGGCAAGGGCAATCGATGT
GCCGTCCGAACTGTGCGTTCCAGTTTATTTTCCCCTACTCATTCATTCTT
CATATCCTCCCCGCAAAACCTATTGTAATTCCCATTTCGCCAGGTCAGGT
GTCTTGCCCGAAGACTGACAGCAAACGCTCGGAACAAAGGGAATTTCCCA
TTTTATTTGCCCTGTCATCTGTCGCGAACAATGCGTCGCACTCTGTTGCT
GATGAAAACAGTTGCGCTTCCACTGAATGTCACCACAAGGAAGACGACAC
AGCAAGAGGCTGTCCCCTGGTACCGGCGTCAGTACAAAGGGGCCAAAGCT
CAGCACTTGTGGCAAGCTGGATGGGGAATTTCTCTGTTGTTAGTTTTCGT
GGGTCTTCCACTAGTAGGCGCCACAGTACAATCACATTTGAAGGTTAAAA
GAGAGAAGCGACGAGCTATTATGAATGATGCGGAGCGTGAAGAGTTCCTG
CGGGATCTCTATGGTCTAGGTGACGAAGATGGTGCCGAAGGCAACAAGGA
ATTGACGCCAAGAGCTAAGATTTAAGTCGAGGAATGGACGCTTGACGCAA
CCCTTGTGGAGACATTTCGAGGAGACAATCAACCTGAAACGTCAGCGTAG
GCGAAAAGAAAGGTGGCCGAGGAGAAATCAGGCGAGCGGTATCTTGTACA
TGCGGGTAGGCAGACACATGGAAGTGACATGTGCGTCTTGTGTATATCAC
CTCTTGTAGTAGTACACAGCAGGCACGTTCGAGGCGAAGCAAGACCAAAC
GCGCACCAGGCAGCTTCCTGAGCGCAGCATTGACTTGGTGGAAAGGTTGA
GACATGTTCGCTGGAGCCGGCGAAATGAGGGGGCGTCTCGGGAAATAAAG
AAGCAACTTCTCAGGCAAACCACTGTCACGGAATAA
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Coding sequence (CDS) from alignment at KK037256.1:61417..62502+

>rna9768 ID=rna9768|Name=rna9768|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at KK037256.1:61417..62502+ (Nannochloropsis gaditana)
ATGAACCTAGCCTTGTGTCTTGCCCGAAGACTGACAGCAAACGCTCGGAA
CAAAGGGAATTTCCCATTTTATTTGCCCTGTCATCTGTCGCGAACAATGC
GTCGCACTCTGTTGCTGATGAAAACAGTTGCGCTTCCACTGAATGTCACC
ACAAGGAAGACGACACAGCAAGAGGCTGTCCCCTGGTACCGGCGTCAGTA
CAAAGGGGCCAAAGCTCAGCACTTGTGGCAAGCTGGATGGGGAATTTCTC
TGTTGTTAGTTTTCGTGGGTCTTCCACTAGTAGGCGCCACAGTACAATCA
CATTTGAAGGTTAAAAGAGAGAAGCGACGAGCTATTATGAATGATGCGGA
GCGTGAAGAGTTCCTGCGGGATCTCTATGAGCTAAGATTTAAGTCGAGGA
ATGGACGCTTGACGCAACCCTTGTGGAGACATTTCGAGGAGACAATCAAC
CTGAAACGTCAGCGTAGGCGAAAAGAAAGGTGGCCGAGGAGAAATCAGGC
GAGCGGTATCTTGTACATGCGGGTAGGCAGACACATGGAAGTGACATGCA
CGTTCGAGGCGAAGCAAGACCAAACGCGCACCAGGCAGCTTCCTGAGCGC
AGCATTGACTTGGTGGAAAGGTTGAGACATGTTCGCTGGAGCCGGCGAAA
TGAGGGGGCGTCTCGGGAAATAAAGAAGCAACTTCTCAGGCAAACCACTG
TCACGGAATAAATGAACCTAGCCTTGTGTCTTGCCCGAAGACTGACAGCA
AACGCTCGGAACAAAGGGAATTTCCCATTTTATTTGCCCTGTCATCTGTC
GCGAACAATGCGTCGCACTCTGTTGCTGATGAAAACAGTTGCGCTTCCAC
TGAATGTCACCACAAGGAAGACGACACAGCAAGAGGCTGTCCCCTGGTAC
CGGCGTCAGTACAAAGGGGCCAAAGCTCAGCACTTGTGGCAAGCTGGATG
GGGAATTTCTCTGTTGTTAGTTTTCGTGGGTCTTCCACTAGTAGGCGCCA
CAGTACAATCACATTTGAAGGTTAAAAGAGAGAAGCGACGAGCTATTATG
AATGATGCGGAGCGTGAAGAGTTCCTGCGGGATCTCTATGAGCTAAGATT
TAAGTCGAGGAATGGACGCTTGACGCAACCCTTGTGGAGACATTTCGAGG
AGACAATCAACCTGAAACGTCAGCGTAGGCGAAAAGAAAGGTGGCCGAGG
AGAAATCAGGCGAGCGGTATCTTGTACATGCGGGTAGGCAGACACATGGA
AGTGACATGCACGTTCGAGGCGAAGCAAGACCAAACGCGCACCAGGCAGC
TTCCTGAGCGCAGCATTGACTTGGTGGAAAGGTTGAGACATGTTCGCTGG
AGCCGGCGAAATGAGGGGGCGTCTCGGGAAATAAAGAAGCAACTTCTCAG
GCAAACCACTGTCACGGAATAAATGAACCTAGCCTTGTGTCTTGCCCGAA
GACTGACAGCAAACGCTCGGAACAAAGGGAATTTCCCATTTTATTTGCCC
TGTCATCTGTCGCGAACAATGCGTCGCACTCTGTTGCTGATGAAAACAGT
TGCGCTTCCACTGAATGTCACCACAAGGAAGACGACACAGCAAGAGGCTG
TCCCCTGGTACCGGCGTCAGTACAAAGGGGCCAAAGCTCAGCACTTGTGG
CAAGCTGGATGGGGAATTTCTCTGTTGTTAGTTTTCGTGGGTCTTCCACT
AGTAGGCGCCACAGTACAATCACATTTGAAGGTTAAAAGAGAGAAGCGAC
GAGCTATTATGAATGATGCGGAGCGTGAAGAGTTCCTGCGGGATCTCTAT
GAGCTAAGATTTAAGTCGAGGAATGGACGCTTGACGCAACCCTTGTGGAG
ACATTTCGAGGAGACAATCAACCTGAAACGTCAGCGTAGGCGAAAAGAAA
GGTGGCCGAGGAGAAATCAGGCGAGCGGTATCTTGTACATGCGGGTAGGC
AGACACATGGAAGTGACATGCACGTTCGAGGCGAAGCAAGACCAAACGCG
CACCAGGCAGCTTCCTGAGCGCAGCATTGACTTGGTGGAAAGGTTGAGAC
ATGTTCGCTGGAGCCGGCGAAATGAGGGGGCGTCTCGGGAAATAAAGAAG
CAACTTCTCAGGCAAACCACTGTCACGGAATAAATGAACCTAGCCTTGTG
TCTTGCCCGAAGACTGACAGCAAACGCTCGGAACAAAGGGAATTTCCCAT
TTTATTTGCCCTGTCATCTGTCGCGAACAATGCGTCGCACTCTGTTGCTG
ATGAAAACAGTTGCGCTTCCACTGAATGTCACCACAAGGAAGACGACACA
GCAAGAGGCTGTCCCCTGGTACCGGCGTCAGTACAAAGGGGCCAAAGCTC
AGCACTTGTGGCAAGCTGGATGGGGAATTTCTCTGTTGTTAGTTTTCGTG
GGTCTTCCACTAGTAGGCGCCACAGTACAATCACATTTGAAGGTTAAAAG
AGAGAAGCGACGAGCTATTATGAATGATGCGGAGCGTGAAGAGTTCCTGC
GGGATCTCTATGAGCTAAGATTTAAGTCGAGGAATGGACGCTTGACGCAA
CCCTTGTGGAGACATTTCGAGGAGACAATCAACCTGAAACGTCAGCGTAG
GCGAAAAGAAAGGTGGCCGAGGAGAAATCAGGCGAGCGGTATCTTGTACA
TGCGGGTAGGCAGACACATGGAAGTGACATGCACGTTCGAGGCGAAGCAA
GACCAAACGCGCACCAGGCAGCTTCCTGAGCGCAGCATTGACTTGGTGGA
AAGGTTGAGACATGTTCGCTGGAGCCGGCGAAATGAGGGGGCGTCTCGGG
AAATAAAGAAGCAACTTCTCAGGCAAACCACTGTCACGGAATAA
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Synonyms
Publications