rna9754, rna9754 (mRNA) Nannochloropsis gaditana

Overview
Namerna9754
Unique Namerna9754
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3119
Alignment locationKK037256.1:33582..35452 -

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Properties
Property NameValue
ProductHAT dimerization
Orig transcript idgnl|cribi|Naga_100455g3.3250.mrna
Orig protein idgnl|cribi|Naga_100455g3.3250
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:33582..35452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100455g3gene9474Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20950.1cds9723Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9754rna9754-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=mRNA|length=3119bp
GATCGCCTTTCTCGCCGCACATGTCCACACAGCCCAAACAAAATCTATGA
TCTCTAACAGATCGATCAACGCACTTTCCATTCGCTTTCCGTCCTACATA
AACAGGTCTACTTTGAATAGCCGTTGGTTTCTTTCTTTTCTCGTTGCGCA
AAGAACACTCCTTGGCGACTTTCCATTCTTTCACTACACCATGATCTCGT
CCCTATACCTACCTGGAGGGCGAAAGGACGACGAGGTCGCTGGGGCTTAC
GATGTTAATTTGGGCGGCATTCCAGGGGCCGGCGACCCCCTCCAAACCCA
CTATTCTACATTCCATCACCACATGCCGCGAGACGCCTACACTCAACCTC
AATACACCTCGCACCCCTTTGAGGTGGACGGAGGATTCTGCGTGGCGATG
GACAAGGACGTGAGCGGTACCAAGGAGGAGGACACCTACATGTACTCGAC
GACAGGGCAGCGTTCTTTTCAGCCAGACTTCGCCGCCGCGCCCGCGTCCT
CCACATTTCCTTGCTCCCTCTCCTTCTCCACACAGACGGTGCCGCAATCG
GCCTCCCACCCGTCTCCCATGGACCTTTCTGGTGAGCAGCAACAATCGCG
GCGGCAGGGCGGACGGAGCGACGGGGGCCGACCGTCCCCGCTGGGTCTCC
CGGACACGGATGAAGACACCGATACAGCCGCTGGGAGCGTGGAAGGGCCC
ATCCTGGAGGTGTTAGGCAAGTCGATTCCCATTCCTAAAAACTACACAGC
CCCCAAGAAGCCCCGGAAACAGCCGGTGGCGTCAGTCAAGTGGACCGCCG
AGGAGGACGAGCGCCTGCGTGAGGTGGTCGCTGCACAAGGGGCCAAAAAC
TGGCGTCGCGTGGCGGAGATACTGGACTGCCCTGGCCGCACGGACGTTTC
GTGCCAACACCGGTGGAATAAAGTGCTGCGGCCGGGCCTGAAGCGTGGCG
CGTGGACGGAGGAGGAGGACGCGGTGGTGAAGAAGATGGTGATGGCGACG
GGTCTGGAGGAGATCCGGTGGTCGGTCGTGGCGGACGCCTGCCCCGGGCG
CATGGGGAAGCAGTGCCGCGAGCGCTGGTTCAACCACTTGGACCCGGACA
TCAACCGGGCGGAGTGGAGTCCCGAGGAGGACAGGATTCTCTACGAGACG
CACCTGGTCTTCGGAAACCGGTGGACCGAGATCGCCAAATTCGTCCCAGG
GCGGACGGAGAATGCGGTCAAGAACCGCTTCAACAGTGCCACCTTCAAAA
ACTGGGTGAGGGCCCAAGGCCTCGTTCTCCGCGCCCCCGGCGCCCCTCCC
GCCCCCGCGGCTGCCCTCCCCGAGATCCCTCCCCCCACTCTCAAACGCCG
TAAACCCAAGCGCGCTGCCGCCACCTCCGCCGCTGCCGCCACCAAGACCA
CCTCCACCCGTGACAGCACCGCTGACAGTGGCGGGGATGCTGAGGTGAGC
CCGAGCAAGGGCCAGGGGGTCCCGGCTCCCGCGGCCGGTGGGAGACTCAG
CTGCAAGGGTGTCCGGGAGCCCAAGAAGAACACCTCCGCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCCTTCCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCTACCTCCTCCTCGATCCCCGCTTCCGCTGGCCAGCCCTCCTGCCCCA
CGGCCTCCTTCCAGGGCGTGGACGCCGGCTCAACCATCTCGTCCCTCTTT
CCCTCGTACCCTTCCTCCTCCTCCTCCTTCTCCTCCCTGCCTTCCTCCAC
CGCTTCCTCCTCCTCCTCCTCCATCCTAACCCACCAAGCTGAATTCTCCC
CCCTGCTCTCCTCCTCCCCTTCCTTCTCCTCCTCCGCCACCTCCTTCACG
CACGTCCACCCGCCCAAGAGGGTCTTCTCCCATTCCCCCTCCTCCTCCTC
CTCCTCCTTGCACCCCTACGCCCACTCCCTCTACGCTCAAGGGAGCCACC
AAAGTGACGACTTCCTCTCCACTGCGTCTTCGACCTTGACCTCCGCCCCC
ACTGCCCTCTCGCAGCACCAGCGCATCTCCTCCTCCGACATAGTGCGGGA
GCTGCAAACCTGGCTGAGCCTTGGGGACACTGTTCCCCTGGGCCCGCCCT
CCATCCCACCCTCCCTCGCCGCCTCGACCCACATGACAGACCAGCAGTGG
CCATGCGAACAAGGCGGGCGAAGTGGGAACTTGTCGATGTTCCAAGCGCA
AGATTTGATGCCCCGCGTCGAGAAAGGCCACGAGCAGGAGGGGAGGGAAG
CGCCGGAGGACGCAAGCTATGATTTTGTGTCCGGTGCGTCCACTTCCTCC
CTCTTCCTTTCGGATCTATGAGAGCCGTGGTACCAGGGGATCTGGGACGG
CAGAGGAAGCAATGGTGGTGACGGGGAGGGCGGGAGGGAGGAAGAGGTTT
GACTTGACGGCTTTGGCCAGCGGATGCGTAGATTACCCAAAAGGACGCTG
CTCCGCTTCGATTGTGGCTTGTGACGCCATTTGTTGGATACCAGTGCGTT
CCAGGGACTGGTGTGGTCGGAGATGGAAGGGAGGGAGGGCGGGAGGGAGG
CATGGGGTAAGTCAGGCTGACGGACGTGGAGACACCACCGCCTGTCGAGC
TTCCACGGACCGCTTACTCGCACTTGCTGAATGGAGTACTATGCTTCATG
TCGTCTTTACATTTTTGCATGAGTGTATCGGGTGTTGTCTATTTGAAATC
CATCCCAGGACCTATAAAGCTCTTGATCCGAACAAGCAGATCGTGAGCTC
TCTGACCTTCACTATTGGGAAGACTTGATAAAATGTGCATGTCTGATTGT
AGATAGGGTACAGGCCTTGCAAAGGAGAATAGGGAGCTCTCTTGTCGACT
TGAGAGGAAAGAAAGGGCTCATTGAATCAAAAGACAAAAAGATAAAATAT
TTAGACACAATGGGGACGTGACCAATGGACGCAGAATGCTTTTTTGGTCT
GCTACGACTTATTCTCATTAACGAGGGTTATGGAATCATTCTGCAACTAA
CATTCTCAAGATCCTGCGGCCCGTTGACGAAGTAAATTGTCTGTAGACAG
CTTTTTCCATCTTTCGATT
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protein sequence of rna9754

>rna9754-protein ID=rna9754-protein|Name=rna9754|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MGERVHEQRVYLVQFRDAHLSVKQCCLTPQEHQLQVQLLAVLEPFKEAMD
VFQTTHSVVISKPYPILLQVYSDLTSDAAILVIPGAKEGIAASELLPLVN
EQRMRLATSLQARWLGVNKGEAVEDFTIYGSAAYLDPRNIAVQLLFHLRL
EDGTILLHHMHQAVNRLVRGRMEDVIAFLEREAARTPTAPWTTRALIHYR
KERAAVAQHHKQEEKHHTQGQEGVDGVSPPTKRLKSWWASLQAELLRECG
RAVGVGEGGGVGEGRPKQYITEIVATQLFKEDLVAYGQFWKPECIAVHGL
PMEKEECPLVSFWGLMKNRESMPVLCFLAHVILSLQPSSADTEHLFSDSS
LTLSERRQSLDAQRLDDLVVVKENWDYFHLKFTKEKEENKRKMRVDHNKN
IGKGMKKALAVMNQQKVLLQKKIYDC
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mRNA from alignment at KK037256.1:33582..35452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at KK037256.1:33582..35452- (Nannochloropsis gaditana)
CAGGAAGTAGCTGCAGCGGATGGGCATGATTCTGCGATATCTCGACAAAG ACACGTTAGAGCGACGGAGAGTTGTGCTCGCCTGCAAATTCTGGGAAAAG GCGCTAGATGTGGAGGGGACGGCTGTCATGGTGAAAGAGGTTCTGGCAGA CTGGGGCATCGAGGTGACGCAGATCGACATGGAGTGCACAGACAACGCCT CCGTCATGATCTCCTGCATCGATAACCACTTCAAGGGATGGAAACGGCTC GCCTGCAACCCCCACACGCAGCAGCTCTCGGTCAACGACGTGCTGGTGGG CTCCTACACGAAGGAGTGCGTGCCAGTGGAGAGTGGCGCCCAGACCGAGT CATTTAAACGCCAGGTCTGGGCGGGGAAAGGGCCTGAGGAGGTAGCGCTG CTCTTCCGCCGCGTCCGCTACTAGTGAACTACCACGCCAACAGACCGAAC AGCAAGCTGTTCCTGCACTGCTGCAACAAGGCGGTTAGGACCGGGGCCGA AGAGACGCGCTGGACTGAGCTGTATCTATGGGCGAGCGCGTGCACGAGCA GCGGGTGTATCTGGTACAGTTTCGAGATGCGCACCTGAGCGTAAAGCAGT GCTGCCTGACGCCGCAGGAGCACCAGCTGCAGGTGCAGCTGCTGGCGGTG CTGGAGCCCTTCAAGGAGGCCATGGACGTATTCCAGACTACGCACTCGGT CGTCATCTCCAAGCCTTACCCCATCCTTCTCCAAGTTTACAGCGACCTGA CCAGCGACGCGGCAATACTCGTCATCCCCGGGGCCAAGGAGGGCATCGCA GCATCAGAGCTCCTGCCGCTGGTAAATGAACAGCGGATGCGCCTCGCCAC CAGCCTCCAGGCGCGGTGGCTCGGCGTGAACAAGGGTGAGGCTGTCGAGG ACTTTACTATCTACGGCTCCGCTGCCTACTTAGACCCGCGGAACATTGCG GTGCAGCTTCTCTTCCACCTACGGCTAGAGGACGGCACCATCTTATTACA CCACATGCACCAGGCAGTGAATCGCCTGGTGAGAGGGCGCATGGAGGACG TCATCGCCTTCCTGGAGCGCGAGGCCGCTCGCACCCCCACGGCCCCGTGG ACGACGCGAGCTTTAATACACTACCGCAAGGAGAGGGCAGCGGTGGCGCA GCATCACAAGCAGGAGGAGAAGCACCACACGCAGGGGCAGGAGGGTGTCG ATGGCGTGTCACCTCCCACGAAGCGTTTGAAGAGCTGGTGGGCCTCCTTG CAGGCGGAGCTCCTCCGTGAATGCGGTAGGGCCGTGGGGGTCGGCGAAGG TGGCGGCGTGGGCGAGGGCCGGCCCAAGCAGTACATCACTGAGATAGTGG CGACGCAGCTCTTCAAGGAAGACTTGGTCGCGTATGGCCAATTCTGGAAG CCGGAGTGTATCGCCGTGCACGGGCTGCCGATGGAGAAGGAGGAGTGCCC TCTCGTTTCGTTTTGGGGGTTGATGAAAAACAGAGAGAGCATGCCTGTCT TATGCTTCCTCGCCCACGTGATACTATCCCTGCAACCCTCCTCCGCCGAT ACCGAGCACCTCTTTTCCGACAGCAGTTTGACTTTGAGTGAGCGCCGCCA GTCCTTGGATGCGCAGCGACTGGATGATTTGGTGGTTGTGAAGGAGAACT GGGACTACTTCCACCTCAAGTTCACCAAAGAGAAGGAGGAGAATAAGAGG AAGATGAGGGTAGACCACAACAAAAACATTGGAAAGGGGATGAAAAAAGC GCTCGCGGTCATGAATCAGCAGAAGGTGTTGCTTCAGAAGAAAATTTACG ACTGTTGACATTAAAGAGACAGAAGAGCAGAGCGAAAGACTTTGTTTACG TAACTTATATAAACTTTATTC
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Coding sequence (CDS) from alignment at KK037256.1:33582..35452-

>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at KK037256.1:33582..35452- (Nannochloropsis gaditana)
ATGGGCGAGCGCGTGCACGAGCAGCGGGTGTATCTGGTACAGTTTCGAGA
TGCGCACCTGAGCGTAAAGCAGTGCTGCCTGACGCCGCAGGAGCACCAGC
TGCAGGTGCAGCTGCTGGCGGTGCTGGAGCCCTTCAAGGAGGCCATGGAC
GTATTCCAGACTACGCACTCGGTCGTCATCTCCAAGCCTTACCCCATCCT
TCTCCAAGTTTACAGCGACCTGACCAGCGACGCGGCAATACTCGTCATCC
CCGGGGCCAAGGAGGGCATCGCAGCATCAGAGCTCCTGCCGCTGGTAAAT
GAACAGCGGATGCGCCTCGCCACCAGCCTCCAGGCGCGGTGGCTCGGCGT
GAACAAGGGTGAGGCTGTCGAGGACTTTACTATCTACGGCTCCGCTGCCT
ACTTAGACCCGCGGAACATTGCGGTGCAGCTTCTCTTCCACCTACGGCTA
GAGGACGGCACCATCTTATTACACCACATGCACCAGGCAGTGAATCGCCT
GGTGAGAGGGCGCATGGAGGACGTCATCGCCTTCCTGGAGCGCGAGGCCG
CTCGCACCCCCACGGCCCCGTGGACGACGCGAGCTTTAATACACTACCGC
AAGGAGAGGGCAGCGGTGGCGCAGCATCACAAGCAGGAGGAGAAGCACCA
CACGCAGGGGCAGGAGGGTGTCGATGGCGTGTCACCTCCCACGAAGCGTT
TGAAGAGCTGGTGGGCCTCCTTGCAGGCGGAGCTCCTCCGTGAATGCGGT
AGGGCCGTGGGGGTCGGCGAAGGTGGCGGCGTGGGCGAGGGCCGGCCCAA
GCAGTACATCACTGAGATAGTGGCGACGCAGCTCTTCAAGGAAGACTTGG
TCGCGTATGGCCAATTCTGGAAGCCGGAGTGTATCGCCGTGCACGGGCTG
CCGATGGAGAAGGAGGAGTGCCCTCTCGTTTCGTTTTGGGGGTTGATGAA
AAACAGAGAGAGCATGCCTGTCTTATGCTTCCTCGCCCACGTGATACTAT
CCCTGCAACCCTCCTCCGCCGATACCGAGCACCTCTTTTCCGACAGCAGT
TTGACTTTGAGTGAGCGCCGCCAGTCCTTGGATGCGCAGCGACTGGATGA
TTTGGTGGTTGTGAAGGAGAACTGGGACTACTTCCACCTCAAGTTCACCA
AAGAGAAGGAGGAGAATAAGAGGAAGATGAGGGTAGACCACAACAAAAAC
ATTGGAAAGGGGATGAAAAAAGCGCTCGCGGTCATGAATCAGCAGAAGGT
GTTGCTTCAGAAGAAAATTTACGACTGTTGA
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Synonyms
Publications