rna9754, rna9754 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9754
Unique Name	rna9754
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3119
Alignment location	KK037256.1:33582..35452 -

Link to JBrowse

Properties


Property Name	Value
Product	HAT dimerization
Orig transcript id	gnl\|cribi\|Naga_100455g3.3250.mrna
Orig protein id	gnl\|cribi\|Naga_100455g3.3250
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:33582..35452 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100455g3	gene9474	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20950.1	cds9723	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9754	rna9754-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:33582..35452-
coding sequence from alignment at KK037256.1:33582..35452-

mRNA sequence

>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=mRNA|length=3119bp
GATCGCCTTTCTCGCCGCACATGTCCACACAGCCCAAACAAAATCTATGA
TCTCTAACAGATCGATCAACGCACTTTCCATTCGCTTTCCGTCCTACATA
AACAGGTCTACTTTGAATAGCCGTTGGTTTCTTTCTTTTCTCGTTGCGCA
AAGAACACTCCTTGGCGACTTTCCATTCTTTCACTACACCATGATCTCGT
CCCTATACCTACCTGGAGGGCGAAAGGACGACGAGGTCGCTGGGGCTTAC
GATGTTAATTTGGGCGGCATTCCAGGGGCCGGCGACCCCCTCCAAACCCA
CTATTCTACATTCCATCACCACATGCCGCGAGACGCCTACACTCAACCTC
AATACACCTCGCACCCCTTTGAGGTGGACGGAGGATTCTGCGTGGCGATG
GACAAGGACGTGAGCGGTACCAAGGAGGAGGACACCTACATGTACTCGAC
GACAGGGCAGCGTTCTTTTCAGCCAGACTTCGCCGCCGCGCCCGCGTCCT
CCACATTTCCTTGCTCCCTCTCCTTCTCCACACAGACGGTGCCGCAATCG
GCCTCCCACCCGTCTCCCATGGACCTTTCTGGTGAGCAGCAACAATCGCG
GCGGCAGGGCGGACGGAGCGACGGGGGCCGACCGTCCCCGCTGGGTCTCC
CGGACACGGATGAAGACACCGATACAGCCGCTGGGAGCGTGGAAGGGCCC
ATCCTGGAGGTGTTAGGCAAGTCGATTCCCATTCCTAAAAACTACACAGC
CCCCAAGAAGCCCCGGAAACAGCCGGTGGCGTCAGTCAAGTGGACCGCCG
AGGAGGACGAGCGCCTGCGTGAGGTGGTCGCTGCACAAGGGGCCAAAAAC
TGGCGTCGCGTGGCGGAGATACTGGACTGCCCTGGCCGCACGGACGTTTC
GTGCCAACACCGGTGGAATAAAGTGCTGCGGCCGGGCCTGAAGCGTGGCG
CGTGGACGGAGGAGGAGGACGCGGTGGTGAAGAAGATGGTGATGGCGACG
GGTCTGGAGGAGATCCGGTGGTCGGTCGTGGCGGACGCCTGCCCCGGGCG
CATGGGGAAGCAGTGCCGCGAGCGCTGGTTCAACCACTTGGACCCGGACA
TCAACCGGGCGGAGTGGAGTCCCGAGGAGGACAGGATTCTCTACGAGACG
CACCTGGTCTTCGGAAACCGGTGGACCGAGATCGCCAAATTCGTCCCAGG
GCGGACGGAGAATGCGGTCAAGAACCGCTTCAACAGTGCCACCTTCAAAA
ACTGGGTGAGGGCCCAAGGCCTCGTTCTCCGCGCCCCCGGCGCCCCTCCC
GCCCCCGCGGCTGCCCTCCCCGAGATCCCTCCCCCCACTCTCAAACGCCG
TAAACCCAAGCGCGCTGCCGCCACCTCCGCCGCTGCCGCCACCAAGACCA
CCTCCACCCGTGACAGCACCGCTGACAGTGGCGGGGATGCTGAGGTGAGC
CCGAGCAAGGGCCAGGGGGTCCCGGCTCCCGCGGCCGGTGGGAGACTCAG
CTGCAAGGGTGTCCGGGAGCCCAAGAAGAACACCTCCGCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCCTTCCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCTACCTCCTCCTCGATCCCCGCTTCCGCTGGCCAGCCCTCCTGCCCCA
CGGCCTCCTTCCAGGGCGTGGACGCCGGCTCAACCATCTCGTCCCTCTTT
CCCTCGTACCCTTCCTCCTCCTCCTCCTTCTCCTCCCTGCCTTCCTCCAC
CGCTTCCTCCTCCTCCTCCTCCATCCTAACCCACCAAGCTGAATTCTCCC
CCCTGCTCTCCTCCTCCCCTTCCTTCTCCTCCTCCGCCACCTCCTTCACG
CACGTCCACCCGCCCAAGAGGGTCTTCTCCCATTCCCCCTCCTCCTCCTC
CTCCTCCTTGCACCCCTACGCCCACTCCCTCTACGCTCAAGGGAGCCACC
AAAGTGACGACTTCCTCTCCACTGCGTCTTCGACCTTGACCTCCGCCCCC
ACTGCCCTCTCGCAGCACCAGCGCATCTCCTCCTCCGACATAGTGCGGGA
GCTGCAAACCTGGCTGAGCCTTGGGGACACTGTTCCCCTGGGCCCGCCCT
CCATCCCACCCTCCCTCGCCGCCTCGACCCACATGACAGACCAGCAGTGG
CCATGCGAACAAGGCGGGCGAAGTGGGAACTTGTCGATGTTCCAAGCGCA
AGATTTGATGCCCCGCGTCGAGAAAGGCCACGAGCAGGAGGGGAGGGAAG
CGCCGGAGGACGCAAGCTATGATTTTGTGTCCGGTGCGTCCACTTCCTCC
CTCTTCCTTTCGGATCTATGAGAGCCGTGGTACCAGGGGATCTGGGACGG
CAGAGGAAGCAATGGTGGTGACGGGGAGGGCGGGAGGGAGGAAGAGGTTT
GACTTGACGGCTTTGGCCAGCGGATGCGTAGATTACCCAAAAGGACGCTG
CTCCGCTTCGATTGTGGCTTGTGACGCCATTTGTTGGATACCAGTGCGTT
CCAGGGACTGGTGTGGTCGGAGATGGAAGGGAGGGAGGGCGGGAGGGAGG
CATGGGGTAAGTCAGGCTGACGGACGTGGAGACACCACCGCCTGTCGAGC
TTCCACGGACCGCTTACTCGCACTTGCTGAATGGAGTACTATGCTTCATG
TCGTCTTTACATTTTTGCATGAGTGTATCGGGTGTTGTCTATTTGAAATC
CATCCCAGGACCTATAAAGCTCTTGATCCGAACAAGCAGATCGTGAGCTC
TCTGACCTTCACTATTGGGAAGACTTGATAAAATGTGCATGTCTGATTGT
AGATAGGGTACAGGCCTTGCAAAGGAGAATAGGGAGCTCTCTTGTCGACT
TGAGAGGAAAGAAAGGGCTCATTGAATCAAAAGACAAAAAGATAAAATAT
TTAGACACAATGGGGACGTGACCAATGGACGCAGAATGCTTTTTTGGTCT
GCTACGACTTATTCTCATTAACGAGGGTTATGGAATCATTCTGCAACTAA
CATTCTCAAGATCCTGCGGCCCGTTGACGAAGTAAATTGTCTGTAGACAG
CTTTTTCCATCTTTCGATT

protein sequence of rna9754

>rna9754-protein ID=rna9754-protein|Name=rna9754|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MGERVHEQRVYLVQFRDAHLSVKQCCLTPQEHQLQVQLLAVLEPFKEAMD
VFQTTHSVVISKPYPILLQVYSDLTSDAAILVIPGAKEGIAASELLPLVN
EQRMRLATSLQARWLGVNKGEAVEDFTIYGSAAYLDPRNIAVQLLFHLRL
EDGTILLHHMHQAVNRLVRGRMEDVIAFLEREAARTPTAPWTTRALIHYR
KERAAVAQHHKQEEKHHTQGQEGVDGVSPPTKRLKSWWASLQAELLRECG
RAVGVGEGGGVGEGRPKQYITEIVATQLFKEDLVAYGQFWKPECIAVHGL
PMEKEECPLVSFWGLMKNRESMPVLCFLAHVILSLQPSSADTEHLFSDSS
LTLSERRQSLDAQRLDDLVVVKENWDYFHLKFTKEKEENKRKMRVDHNKN
IGKGMKKALAVMNQQKVLLQKKIYDC

mRNA from alignment at KK037256.1:33582..35452-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at KK037256.1:33582..35452- (Nannochloropsis gaditana)
CAGGAAGTAGCTGCAGCGGATGGGCATGATTCTGCGATATCTCGACAAAG
ACACGTTAGAGCGACGGAGAGTTGTGCTCGCCTGCAAATTCTGGGAAAAG
GCGCTAGATGTGGAGGGGACGGCTGTCATGGTGAAAGAGGTTCTGGCAGA
CTGGGGCATCGAGGTGACGCAGATCGACATGGAGTGCACAGACAACGCCT
CCGTCATGATCTCCTGCATCGATAACCACTTCAAGGGATGGAAACGGCTC
GCCTGCAACCCCCACACGCAGCAGCTCTCGGTCAACGACGTGCTGGTGGG
CTCCTACACGAAGGAGTGCGTGCCAGTGGAGAGTGGCGCCCAGACCGAGT
CATTTAAACGCCAGGTCTGGGCGGGGAAAGGGCCTGAGGAGGTAGCGCTG
CTCTTCCGCCGCGTCCGCTACTAGTGAACTACCACGCCAACAGACCGAAC
AGCAAGCTGTTCCTGCACTGCTGCAACAAGGCGGTTAGGACCGGGGCCGA
AGAGACGCGCTGGACTGAGCTGTATCTATGGGCGAGCGCGTGCACGAGCA
GCGGGTGTATCTGGTACAGTTTCGAGATGCGCACCTGAGCGTAAAGCAGT
GCTGCCTGACGCCGCAGGAGCACCAGCTGCAGGTGCAGCTGCTGGCGGTG
CTGGAGCCCTTCAAGGAGGCCATGGACGTATTCCAGACTACGCACTCGGT
CGTCATCTCCAAGCCTTACCCCATCCTTCTCCAAGTTTACAGCGACCTGA
CCAGCGACGCGGCAATACTCGTCATCCCCGGGGCCAAGGAGGGCATCGCA
GCATCAGAGCTCCTGCCGCTGGTAAATGAACAGCGGATGCGCCTCGCCAC
CAGCCTCCAGGCGCGGTGGCTCGGCGTGAACAAGGGTGAGGCTGTCGAGG
ACTTTACTATCTACGGCTCCGCTGCCTACTTAGACCCGCGGAACATTGCG
GTGCAGCTTCTCTTCCACCTACGGCTAGAGGACGGCACCATCTTATTACA
CCACATGCACCAGGCAGTGAATCGCCTGGTGAGAGGGCGCATGGAGGACG
TCATCGCCTTCCTGGAGCGCGAGGCCGCTCGCACCCCCACGGCCCCGTGG
ACGACGCGAGCTTTAATACACTACCGCAAGGAGAGGGCAGCGGTGGCGCA
GCATCACAAGCAGGAGGAGAAGCACCACACGCAGGGGCAGGAGGGTGTCG
ATGGCGTGTCACCTCCCACGAAGCGTTTGAAGAGCTGGTGGGCCTCCTTG
CAGGCGGAGCTCCTCCGTGAATGCGGTAGGGCCGTGGGGGTCGGCGAAGG
TGGCGGCGTGGGCGAGGGCCGGCCCAAGCAGTACATCACTGAGATAGTGG
CGACGCAGCTCTTCAAGGAAGACTTGGTCGCGTATGGCCAATTCTGGAAG
CCGGAGTGTATCGCCGTGCACGGGCTGCCGATGGAGAAGGAGGAGTGCCC
TCTCGTTTCGTTTTGGGGGTTGATGAAAAACAGAGAGAGCATGCCTGTCT
TATGCTTCCTCGCCCACGTGATACTATCCCTGCAACCCTCCTCCGCCGAT
ACCGAGCACCTCTTTTCCGACAGCAGTTTGACTTTGAGTGAGCGCCGCCA
GTCCTTGGATGCGCAGCGACTGGATGATTTGGTGGTTGTGAAGGAGAACT
GGGACTACTTCCACCTCAAGTTCACCAAAGAGAAGGAGGAGAATAAGAGG
AAGATGAGGGTAGACCACAACAAAAACATTGGAAAGGGGATGAAAAAAGC
GCTCGCGGTCATGAATCAGCAGAAGGTGTTGCTTCAGAAGAAAATTTACG
ACTGTTGACATTAAAGAGACAGAAGAGCAGAGCGAAAGACTTTGTTTACG
TAACTTATATAAACTTTATTC

Coding sequence (CDS) from alignment at KK037256.1:33582..35452-

>rna9754 ID=rna9754|Name=rna9754|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at KK037256.1:33582..35452- (Nannochloropsis gaditana)
ATGGGCGAGCGCGTGCACGAGCAGCGGGTGTATCTGGTACAGTTTCGAGA
TGCGCACCTGAGCGTAAAGCAGTGCTGCCTGACGCCGCAGGAGCACCAGC
TGCAGGTGCAGCTGCTGGCGGTGCTGGAGCCCTTCAAGGAGGCCATGGAC
GTATTCCAGACTACGCACTCGGTCGTCATCTCCAAGCCTTACCCCATCCT
TCTCCAAGTTTACAGCGACCTGACCAGCGACGCGGCAATACTCGTCATCC
CCGGGGCCAAGGAGGGCATCGCAGCATCAGAGCTCCTGCCGCTGGTAAAT
GAACAGCGGATGCGCCTCGCCACCAGCCTCCAGGCGCGGTGGCTCGGCGT
GAACAAGGGTGAGGCTGTCGAGGACTTTACTATCTACGGCTCCGCTGCCT
ACTTAGACCCGCGGAACATTGCGGTGCAGCTTCTCTTCCACCTACGGCTA
GAGGACGGCACCATCTTATTACACCACATGCACCAGGCAGTGAATCGCCT
GGTGAGAGGGCGCATGGAGGACGTCATCGCCTTCCTGGAGCGCGAGGCCG
CTCGCACCCCCACGGCCCCGTGGACGACGCGAGCTTTAATACACTACCGC
AAGGAGAGGGCAGCGGTGGCGCAGCATCACAAGCAGGAGGAGAAGCACCA
CACGCAGGGGCAGGAGGGTGTCGATGGCGTGTCACCTCCCACGAAGCGTT
TGAAGAGCTGGTGGGCCTCCTTGCAGGCGGAGCTCCTCCGTGAATGCGGT
AGGGCCGTGGGGGTCGGCGAAGGTGGCGGCGTGGGCGAGGGCCGGCCCAA
GCAGTACATCACTGAGATAGTGGCGACGCAGCTCTTCAAGGAAGACTTGG
TCGCGTATGGCCAATTCTGGAAGCCGGAGTGTATCGCCGTGCACGGGCTG
CCGATGGAGAAGGAGGAGTGCCCTCTCGTTTCGTTTTGGGGGTTGATGAA
AAACAGAGAGAGCATGCCTGTCTTATGCTTCCTCGCCCACGTGATACTAT
CCCTGCAACCCTCCTCCGCCGATACCGAGCACCTCTTTTCCGACAGCAGT
TTGACTTTGAGTGAGCGCCGCCAGTCCTTGGATGCGCAGCGACTGGATGA
TTTGGTGGTTGTGAAGGAGAACTGGGACTACTTCCACCTCAAGTTCACCA
AAGAGAAGGAGGAGAATAAGAGGAAGATGAGGGTAGACCACAACAAAAAC
ATTGGAAAGGGGATGAAAAAAGCGCTCGCGGTCATGAATCAGCAGAAGGT
GTTGCTTCAGAAGAAAATTTACGACTGTTGA

Synonyms

Publications