rna9751, rna9751 (mRNA) Nannochloropsis gaditana

Overview
Namerna9751
Unique Namerna9751
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length369
Alignment locationKK037256.1:22499..23059 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101848g1.1276.mrna
Orig protein idgnl|cribi|Naga_101848g1.1276
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:22499..23059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101848g1gene9471Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9751rna9751-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20953.1cds9720Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9751 ID=rna9751|Name=rna9751|organism=Nannochloropsis gaditana|type=mRNA|length=369bp
ATGTGCTGCGTGCTTCATTTCCTTGATTCCCTTTGCTTTTCCTTCCTTCC
CTGCTTCCCACAGATCACTGTCCAGGCCGCAATGGAGAAGCTATCCCTCG
CAGTGGTGGGCTCCCTCGCCGTGGCTTCCGCCTTCCAGCCTTCTTCTTTC
TTCCTCCTCCAGCATCCCTCCCTGAGCAGTCGCTCCTCCCCGGTGGCCCG
TAAAGCCGGCAGTATCAGCATGGATTTGCCTCCTCTGCAACGCAAGAGGG
TGGTGATAACGGGCGTGGGAGCCGTCTCGCCCCTCGGGTGGGGCGACGAT
TTCTGGAACGGTCTGATAGAAGGCCGAAGCGGCATCTCCCCGACTCCTTC
AAGCCCTCCGACTACATGA
back to top

protein sequence of rna9751

>rna9751-protein ID=rna9751-protein|Name=rna9751|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MITLTLTRTEESRATKWQGQWGQRKVGGNSRASGGRDIIFFVGPFRSEGF
SVSVRKGIRETRCTRDSMTKSSLFATHNVSNKALLRVRPKPRSTFMQKIR
KSGRVLTPFFMRLRR
back to top

mRNA from alignment at KK037256.1:22499..23059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9751 ID=rna9751|Name=rna9751|organism=Nannochloropsis gaditana|type=mRNA|length=561bp|location=Sequence derived from alignment at KK037256.1:22499..23059- (Nannochloropsis gaditana)
ATGATTACCCTAACCCTAACCCGAACAGAAGAAAGCCGCGCGACCAAGTG
GCAAGGTCAATGGGGACAACGAAAAGTCTTCACCGAGCTTTCGCATTAGG
AAAGCTGCACCGTTTGCCGCCTTGAGGTATTTTGAGAGCTCGGCAACACG
GGAAGTCTCTCTCCCTCAAGCTTGTACAAGGCGAAGCCAGAAAAGAGTGA
TCGAGACCCTTTTGGAAAAAAATAATCGCGTGCCGATACTTCCCTCATCA
CGGCGAGCTCCACAGAAGGATTGTTCTCTTAATGCAAGGTTGGGGGGAAT
TCTCGAGCATCTGGTGGTCGTGACATCATTTTTTTCGTTGGTCCTTTTCG
ATCCGAGGGCTTCTCAGTCAGTGTGCGCAAAGGAATTAGAGAAACGCGCT
GCACGAGAGACAGTATGACGAAGAGCTCTTTATTTGCAACACATAATGTG
TCCAATAAAGCCCTACTGCGAGTACGTCCTAAGCCTCGTTCCACTTTCAT
GCAAAAAATTCGCAAGTCCGGGAGGGTTTTGACGCCCTTTTTCATGAGAC
TACGACGCTAA
back to top

Coding sequence (CDS) from alignment at KK037256.1:22499..23059-

>rna9751 ID=rna9751|Name=rna9751|organism=Nannochloropsis gaditana|type=CDS|length=696bp|location=Sequence derived from alignment at KK037256.1:22499..23059- (Nannochloropsis gaditana)
GTTGGGGGGAATTCTCGAGCATCTGGTGGTCGTGACATCATTTTTTTCGT
TGGTCCTTTTCGATCCGAGGGCTTCTCAGTCAGTGTGCGCAAAGGAATTA
GAGAAACGCGCTGCACGAGAGACAGTATGACGAAGAGCTCTTTATTTGCA
ACACATAATGTGTCCAATAAAGCCCTACTGCGAGTACGTCCTAAGCCTCG
TTCCACTTTCATGCAAAAAATTCGCAAGTCCGGGAGGGTTTTGACGCCCT
TTTTCATGAGACTACGACGCTAAATGATTACCCTAACCCTAACCCGAACA
GAAGAAAGCCGCGCGACCAAGTGGCAAGGTCAATGGGGACAACGAAAAGT
TGGGGGGAATTCTCGAGCATCTGGTGGTCGTGACATCATTTTTTTCGTTG
GTCCTTTTCGATCCGAGGGCTTCTCAGTCAGTGTGCGCAAAGGAATTAGA
GAAACGCGCTGCACGAGAGACAGTATGACGAAGAGCTCTTTATTTGCAAC
ACATAATGTGTCCAATAAAGCCCTACTGCGAGTACGTCCTAAGCCTCGTT
CCACTTTCATGCAAAAAATTCGCAAGTCCGGGAGGGTTTTGACGCCCTTT
TTCATGAGACTACGACGCTAAATGATTACCCTAACCCTAACCCGAACAGA
AGAAAGCCGCGCGACCAAGTGGCAAGGTCAATGGGGACAACGAAAA
back to top
Synonyms
Publications