rna9746, rna9746 (mRNA) Nannochloropsis gaditana

Overview
Namerna9746
Unique Namerna9746
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length625
Alignment locationKK037256.1:11004..11701 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101659g1.4453.mrna
Orig protein idgnl|cribi|Naga_101659g1.4453
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:11004..11701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101659g1gene9466Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9746rna9746-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20959.1cds9715Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9746 ID=rna9746|Name=rna9746|organism=Nannochloropsis gaditana|type=mRNA|length=625bp
TCTGCCTATCTATTTTGTACGACTTTTTTATCTTTACTGTGGGGACAAGG
GGCCGCACAAGGTGTTCATGCTCATGCACATCCATACACGCCACCAGGGA
AGGGACGCGGGCTGCGGGGAGCGTTCCTCTCGACACATGAGACGGGAACG
GGCACGGGCAGTGGAAAGTGGACCGCGATGGTGATCTCGGTAGGCCTCCA
GATCGTTGTTGGGGTGCTGGGGGTCGCTAGCTTTACCGCCGTGGCCGTCC
ATCACCTCGACCAGAGGGAGATCATGCGTGTGGAGGGCGAGCGAGCGGCA
GAGATCAAACTAGCTGCGGCGGAGATCAAGCGTGTGCTGCAGTCTGGACA
GAAGTCAGGCCCCTTTGACACTCCGTGAAGCCAATGAAATGGTCCAGATA
TTTGCGTCTCATCAAAGCAGCTCCAAGTCTTGTCTTGGCTCGAGGATCGA
TAATACAAACCAGGTTGTGGAACGTGTTATTCGTACTTCGACAGTAAGTC
ATGCTCGCGCTTGCATATTGGCATTTTAACGAATTTTTGATGAACTGTCG
TGACGCATCAACTGCTTCTCCGTCTAAATGACAAAAGAAGAGGAAGAATT
GTAACCGAGATTATTTTTTGTAATT
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protein sequence of rna9746

>rna9746-protein ID=rna9746-protein|Name=rna9746|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MEADSFMDEGHNVGKEQRQKRRSTSSFASMPATASSEGTREVFESSSDAS
GKSRKKRKIDGSLFRRMALRDLFPPPLSRKPVSRAEDGWVLDDKELSPYL
PLLLRLFREMDDAQEPSACTGDQGDGEGGEAGEGWSRAAVWQKLMEVAVR
YPVADKVRERKA
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mRNA from alignment at KK037256.1:11004..11701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9746 ID=rna9746|Name=rna9746|organism=Nannochloropsis gaditana|type=mRNA|length=698bp|location=Sequence derived from alignment at KK037256.1:11004..11701+ (Nannochloropsis gaditana)
ATGGAAGCAGATAGTTTCATGGACGAGGGCCACAATgttgggaaggagca
gagacAGAAGCGGcggtccacctcctccttcgcctcaATGCCAGCCACAG
CGAGCTCGGAAGGCACCCGTGAGGTTTTCGAAAGTAGCAGCGATGCAAGT
GGAAAGTCCcgcaaaaaaaggaaaatagaTGGCAGTTTGTTCCGTCGAAT
GGCCCTGCGCgatctcttccctcctcctctttcccgaaAACCGGTGTCGC
GCGCGGAGGACGGATGGGTGTTGGACGACAAAGAGCTCAGCCCgtacctt
cctctcctcttgcGCCTCTTCCGCGAGATGGATGATGCccaggtgaggag
gagggacggaaaaaagggaaaggcacGGACTCCACTTCAATAAttccttc
ttccatcccttgACATGGTTTACAacacgcgcccccccctcctttccctc
ttttaaGGAGCCCTCCGCTTGCACAGGGGATcaaggagacggggagggag
gggaagcgggcgagGGATGGAGTAGAGCCGCCGTGTGGCAGAAGCTGATG
GAGGTGGCTGTCCGGTACCCTGTCGCGGATAAAGTGAGTACGTATTTGGA
GGCGAGCCGGgccgtgagggaggaggaaggaagaagggaaggaggaaagg
gaggtagcgggggaggtggagaggacggaaggggaaagaaaggcatgA
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Coding sequence (CDS) from alignment at KK037256.1:11004..11701+

>rna9746 ID=rna9746|Name=rna9746|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at KK037256.1:11004..11701+ (Nannochloropsis gaditana)
ATGGAAGCAGATAGTTTCATGGACGAGGGCCACAATgttgggaaggagca
gagacAGAAGCGGcggtccacctcctccttcgcctcaATGCCAGCCACAG
CGAGCTCGGAAGGCACCCGTGAGGTTTTCGAAAGTAGCAGCGATGCAAGT
GGAAAGTCCcgcaaaaaaaggaaaatagaTGGCAGTTTGTTCCGTCGAAT
GGCCCTGCGCgatctcttccctcctcctctttcccgaaAACCGGTGTCGC
GCGCGGAGGACGGATGGGTGTTGGACGACAAAGAGCTCAGCCCgtacctt
cctctcctcttgcGCCTCTTCCGCGAGATGGATGATGCccagGAGCCCTC
CGCTTGCACAGGGGATcaaggagacggggagggaggggaagcgggcgagG
GATGGAGTAGAGCCGCCGTGTGGCAGAAGCTGATGGAGGTGGCTGTCCGG
TACCCTGTCGCGGATAAAGTGAgggaaagaaaggcatgAATGGAAGCAGA
TAGTTTCATGGACGAGGGCCACAATgttgggaaggagcagagacAGAAGC
GGcggtccacctcctccttcgcctcaATGCCAGCCACAGCGAGCTCGGAA
GGCACCCGTGAGGTTTTCGAAAGTAGCAGCGATGCAAGTGGAAAGTCCcg
caaaaaaaggaaaatagaTGGCAGTTTGTTCCGTCGAATGGCCCTGCGCg
atctcttccctcctcctctttcccgaaAACCGGTGTCGCGCGCGGAGGAC
GGATGGGTGTTGGACGACAAAGAGCTCAGCCCgtaccttcctctcctctt
gcGCCTCTTCCGCGAGATGGATGATGCccagGAGCCCTCCGCTTGCACAG
GGGATcaaggagacggggagggaggggaagcgggcgagGGATGGAGTAGA
GCCGCCGTGTGGCAGAAGCTGATGGAGGTGGCTGTCCGGTACCCTGTCGC
GGATAAAGTGAgggaaagaaaggcatgAATGGAAGCAGATAGTTTCATGG
ACGAGGGCCACAATgttgggaaggagcagagacAGAAGCGGcggtccacc
tcctccttcgcctcaATGCCAGCCACAGCGAGCTCGGAAGGCACCCGTGA
GGTTTTCGAAAGTAGCAGCGATGCAAGTGGAAAGTCCcgcaaaaaaagga
aaatagaTGGCAGTTTGTTCCGTCGAATGGCCCTGCGCgatctcttccct
cctcctctttcccgaaAACCGGTGTCGCGCGCGGAGGACGGATGGGTGTT
GGACGACAAAGAGCTCAGCCCgtaccttcctctcctcttgcGCCTCTTCC
GCGAGATGGATGATGCccagGAGCCCTCCGCTTGCACAGGGGATcaagga
gacggggagggaggggaagcgggcgagGGATGGAGTAGAGCCGCCGTGTG
GCAGAAGCTGATGGAGGTGGCTGTCCGGTACCCTGTCGCGGATAAAGTGA
gggaaagaaaggcatgA
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Synonyms
Publications