rna9741, rna9741 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9741
Unique Name	rna9741
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	643
Alignment location	KK037256.1:1..904 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101459g1.10149.mrna
Orig protein id	gnl\|cribi\|Naga_101459g1.10149
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:1..904 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101459g1	gene9461	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9741	rna9741-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20963.1	cds9710	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:1..904-
coding sequence from alignment at KK037256.1:1..904-

mRNA sequence

>rna9741 ID=rna9741|Name=rna9741|organism=Nannochloropsis gaditana|type=mRNA|length=643bp
ACGTCGTATGGCTTATTATGTCGGCCGTCGGGTGGTGTGTCACCAACCTG
ATCTTTTTGAGTAACTAGTTTCGTCGCTGCTTCTCCTCTCTACCCGCATA
GAGGAGGCCGTGCATTAGGTATCGATAAACGGGCACCCCCCGTGACAAAA
CCCCTGATTGCTTGCCTTGTCGTCTTTGTGAAGTATCGTATTTGTGTGGG
ACGCATGATGTTTAGTGCACAATGAAGGAAACCGTCGGAGCGGTACAGGC
CCACAACGCCCTCAATGGAACATCAAGTCTCGCCTCCCCTCACCATGCCT
TGCAGCGTGCTCATTCCATCCACACCTGACACTCCACACCTATGCACAGC
GCCCCTTTTTTTAAACTTTACCAATTCCACCGTCCATCCCTTGCAGCTGT
AAACTCCGTCTTTCCTCTCGCCCGGTCATGCCTCTTCTCCACGCCGCATC
CTCCCTCCTCCCCCTCCTCCTTTCCTCCTCCTTCCTCCACCACCTCCACG
CTTTCACTCCCTCCTCGCCGCCGACGTGCCCCTCCAAAGGCTTATGTCTC
TCCTTCTCCCTCTTTCCCGGGTCAACACCATCCACCCGATCCTCCTCCTC
TTTCCTTTCCGTCTCCCACGGGCACAGTCCTCCCCCTCCCCCT

protein sequence of rna9741

>rna9741-protein ID=rna9741-protein|Name=rna9741|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MPFQFVSLRVPSYAEAARRFLEGRREAQSPTLPLPAPRGSTMAMNFLRRA
YAPSDSNVPEGDQGGDNLHMTEQDLIKAMKQLQHDDSVPEQTRELINQIS
QKFVRTAGSSDMHDIGE

mRNA from alignment at KK037256.1:1..904-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9741 ID=rna9741|Name=rna9741|organism=Nannochloropsis gaditana|type=mRNA|length=904bp|location=Sequence derived from alignment at KK037256.1:1..904- (Nannochloropsis gaditana)
ATGCCCTTTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGC
CCGTAGATTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGC
TTCCAGCACCGAGGTCAGGCCGTCCCCCTCTCCCTCGCGTTCTTTTGCCT
GTGCTTGGGACCCCTTACCTTCCCTTGACAAAACTCTCCCTCCTTCGATT
GTCAAAGGGGTAGTACCATGGCGATGAATTTTCTACGGAGGGCGTACGCC
CCTTCGGACTCCAATGTCCCCGAGGGGTACGTGCAAAGGGGCTGCAAGAG
AGCGGGGGGAGGAGAGAGGGGGGCAAGGGGGGCAAGGAGGGCAAGTGGGG
CAAGGAGGGCAAGTGGGAGGACGGGAGGTATGATATAGAGGGTTTGCTTA
TCCGGACAGTCGGACAGTAATTATAGCTTTTACAGCCTAACACTTATCCA
ATTGTCTCTCAAAAATTGACAGGGACCAAGGTGGAGATAACTTACACATG
ACAGAGCAGGTAGGGGGTTGGGTGGAGGGATAGATTATCGACGGCGCTGG
TGTACGTAAATCCATATCGATACTTATCAAACATATGTTTATACGTGGGT
GTATATATATTAATATTAGGATCTAATCAAGGCGATGAAGCAGCTTCAGC
ACGATGATTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGTAGGA
AGGGAGGTGGAACGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGACAGGCAGCATTTTCCCTTGCCGTGCATGGTGGAATGGTCA
TGTGGTTTATATTGAGTGGAACCTTCGCGCCATTTTTTTCCTCAGATTTC
GCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACATGCACGACATTGGTG
AGAG

Coding sequence (CDS) from alignment at KK037256.1:1..904-

>rna9741 ID=rna9741|Name=rna9741|organism=Nannochloropsis gaditana|type=CDS|length=1765bp|location=Sequence derived from alignment at KK037256.1:1..904- (Nannochloropsis gaditana)
ATTTCGCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACATGCACGACAT
TGGTGAGAGGATCTAATCAAGGCGATGAAGCAGCTTCAGCACGATGATTC
GGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGGACCAAGGTGGAGAT
AACTTACACATGACAGAGCAGGGGTAGTACCATGGCGATGAATTTTCTAC
GGAGGGCGTACGCCCCTTCGGACTCCAATGTCCCCGAGGGATGCCCTTTC
AATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGCCCGTAGATTC
TTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGCTTCCAGCACC
GAGATTTCGCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACATGCACGA
CATTGGTGAGAGGATCTAATCAAGGCGATGAAGCAGCTTCAGCACGATGA
TTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGGACCAAGGTGGA
GATAACTTACACATGACAGAGCAGGGGTAGTACCATGGCGATGAATTTTC
TACGGAGGGCGTACGCCCCTTCGGACTCCAATGTCCCCGAGGGATGCCCT
TTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGCCCGTAGA
TTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGCTTCCAGC
ACCGAGATTTCGCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACATGCA
CGACATTGGTGAGAGGATCTAATCAAGGCGATGAAGCAGCTTCAGCACGA
TGATTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGGACCAAGGT
GGAGATAACTTACACATGACAGAGCAGGGGTAGTACCATGGCGATGAATT
TTCTACGGAGGGCGTACGCCCCTTCGGACTCCAATGTCCCCGAGGGATGC
CCTTTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGCCCGT
AGATTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGCTTCC
AGCACCGAGATTTCGCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGACAT
GCACGACATTGGTGAGAGGATCTAATCAAGGCGATGAAGCAGCTTCAGCA
CGATGATTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGGACCAA
GGTGGAGATAACTTACACATGACAGAGCAGGGGTAGTACCATGGCGATGA
ATTTTCTACGGAGGGCGTACGCCCCTTCGGACTCCAATGTCCCCGAGGGA
TGCCCTTTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCCGCC
CGTAGATTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCCGCT
TCCAGCACCGAGATTTCGCAAAAGTTTGTCCGCACGGCTGGCTCCTCGGA
CATGCACGACATTGGTGAGAGGATCTAATCAAGGCGATGAAGCAGCTTCA
GCACGATGATTCGGTGCCGGAGCAGACCCGCGAGCTCATCAACCAGGGAC
CAAGGTGGAGATAACTTACACATGACAGAGCAGGGGTAGTACCATGGCGA
TGAATTTTCTACGGAGGGCGTACGCCCCTTCGGACTCCAATGTCCCCGAG
GGATGCCCTTTCAATTTGTTTCTCTCCGGGTGCCCTCCTACGCAGAAGCC
GCCCGTAGATTCTTGGAAGGAAGGAGAGAGGCTCAGAGTCCGACGCTGCC
GCTTCCAGCACCGAG

Synonyms

Publications