rna9732, rna9732 (mRNA) Nannochloropsis gaditana

Overview
Namerna9732
Unique Namerna9732
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length375
Alignment locationKK037255.1:285971..286407 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101416g1.3934.mrna
Orig protein idgnl|cribi|Naga_101416g1.3934
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:285971..286407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101416g1gene9451Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9732rna9732-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20972.1cds9701Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9732 ID=rna9732|Name=rna9732|organism=Nannochloropsis gaditana|type=mRNA|length=375bp
ATGATTCTCCCGAGAATAAGACGGAAACCTGGACCAGCACCTGCTCTTCG
GGTCTTTAATGCCTGGTTTTGTCGCGGCCATCTCCCTTTCCTCCTTCTCC
TCCCCTTCCTCCTCACTCTGCTCCCCCCTGGCGCTTCCTCCTTCTTTCTC
ACTCCCACCACCCGCTGCCTTTCTGGCACGCCCTCTCCCTTTTTGGACGA
CATAAATGGCTCTGGTACCTCATTTCTTGCGATAGCTACGGACAGGCACG
GGGAAATACGAGGAGAAGGAGGAAGAGGAAGAAGCGGCAAGCGTGCCTGG
GGGAGGCAGGACAGCGTCAGGAGGCCACTTTTTAAAAAGCCGTCACAAAG
ACGGCTGAGAACTCAGGATGCTTAG
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protein sequence of rna9732

>rna9732-protein ID=rna9732-protein|Name=rna9732|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MDHRHSISSSDQSRDAPNGVQAESQEVESETSMIERQLSGSVVAETSVIG
EEEYDDMDEEETIREERDTFAGRREPSLQRYE
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mRNA from alignment at KK037255.1:285971..286407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9732 ID=rna9732|Name=rna9732|organism=Nannochloropsis gaditana|type=mRNA|length=437bp|location=Sequence derived from alignment at KK037255.1:285971..286407+ (Nannochloropsis gaditana)
ATGGACCATCGACATTCCATCTCGTCGTCTGATCAATCGCGAGATGCCCC
AAACGGCGTTCAAGCGGAATCACAAGAAGTAGAATCGGAAACTTCGATGA
TCGAGAGGCAGCTTTCAGGCAGTGTCGTTGCAGAGACTTCCGTCAtcggg
gaagaggagtaCGACGAcatggacgaagaggaaacaATCCGGGAGGAACG
CGATACCTTCGCCGGGCGTCGCGAGCCTTCACTGGTATGTTTGAAACTTT
CTTACTACCTCAGTACCCCCAACATTTCAACTGATGCGTGATCATCTGTG
CAtcttctctgccttcctcctcttccttcgcctacgacatcctgtcctcc
acgtctaCACAACCTTCTCAGTTCTCTTCGCCAATCTAtcatttcccttt
ctccttcccttcaggATGCCAGCAGCGTTATGAATGA
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Coding sequence (CDS) from alignment at KK037255.1:285971..286407+

>rna9732 ID=rna9732|Name=rna9732|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at KK037255.1:285971..286407+ (Nannochloropsis gaditana)
ATGGACCATCGACATTCCATCTCGTCGTCTGATCAATCGCGAGATGCCCC
AAACGGCGTTCAAGCGGAATCACAAGAAGTAGAATCGGAAACTTCGATGA
TCGAGAGGCAGCTTTCAGGCAGTGTCGTTGCAGAGACTTCCGTCAtcggg
gaagaggagtaCGACGAcatggacgaagaggaaacaATCCGGGAGGAACG
CGATACCTTCGCCGGGCGTCGCGAGCCTTCACTGCAGCGTTATGAATGAA
TGGACCATCGACATTCCATCTCGTCGTCTGATCAATCGCGAGATGCCCCA
AACGGCGTTCAAGCGGAATCACAAGAAGTAGAATCGGAAACTTCGATGAT
CGAGAGGCAGCTTTCAGGCAGTGTCGTTGCAGAGACTTCCGTCAtcgggg
aagaggagtaCGACGAcatggacgaagaggaaacaATCCGGGAGGAACGC
GATACCTTCGCCGGGCGTCGCGAGCCTTCACTGCAGCGTTATGAATGA
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Synonyms
Publications