rna9725, rna9725 (mRNA) Nannochloropsis gaditana

Overview
Namerna9725
Unique Namerna9725
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1486
Alignment locationKK037255.1:262048..263285 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100539g2.5850.mrna
Orig protein idgnl|cribi|Naga_100539g2.5850
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:262048..263285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100539g2gene9444Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9725rna9725-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20979.1cds9694Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9725 ID=rna9725|Name=rna9725|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp
ATGCACAGGCTGGAGAGCTGCGCCTACACCATCCGCACCACTGCCAAGCG
TCCCGGTCCCCAATCCCTCCCTCCCTCCACCTCCGCCTACAGAGCGGCCT
CCCTCTCCTCCCTCCCTCCCCCTCCGCCCTCCCCTCCCGACGCCCTCCTC
GAGAGGGGCGGATCCCGCGCCTCGGTCAGCACCGAGGAGGACCTGGGCTC
GTGGACGGAGGAGTCGGGGGGGGAGGAGGAGGAGGAGGGGGAGGAGACGG
ACTGGAAGGTGGTGCGAACGCCTTCCTACACGGACCGCGTCCTCACGCAC
TCCCTTCCGGGCCAGGGGGGCTCGCTCCGCCTCCTGCACTACGACATGTG
CGACGCCGTGGAGCTCTCCGATCATCGCCCGGTGGTGGCTACCTACACGC
TGCAGGTGGATGGGCAGGTGCGGGGCTTTGGGAGGGAGGTGCCGGGGGAG
GGCGGGGGGGAGGACGGGCTCGCGGTCTTTTCCTTCACCGTCGGGCGGCC
CCGGGTCGAGTTCTTCCTGCCGGCGGTTCTGCTGGGGGAGGGGGAAGGGG
GGGAGATGGAAGGCAAGGAGATGCACGGGAAGGAAGGTGGGAGGCGGCCG
GGCGGAAGGACACGTCTGCCGTCCCCGCACAGGGTCACCTTCCTCTTCCC
CTTGGTGCCGGAGGACCCCGTGGCGGAGGAGCGGCTGGCTTCGGCGCTGG
GCGACGCCTTTGCCTCCGGCCCGTTCGCTGGGAACCCGGTCTGGCCCTTC
TCCTCCCTCTTCTCCACGGCCGCGGGCCGGGACCGGGCGGGAAGCGAGGG
CAGCTCCGGGTCGGGGGGGGCCGGTGTCGGTGATGTCCCTGGAAGGGGCG
GGCGCAGGGGACGCAGGATGACGGCCAGTGCGCGCCGCGATGTCCGGTGG
GGAAAGAAAGGCTTCCCCGTGCGCTTTGAGACGGTGGCCTCCCCTCGCTT
CTCCCAACACATGCTTGTCAAGCTCGCCGACGCCAAGGGCCGGGACCTGG
GAGAGGCGGTGTTGCCCGTCTCCGTGGCTGTGGCGCCGGAAGAGGAGGAG
GAGGGGCACGAGTGCCCAAATGGAGGGCGACACTTGGAGAACTTGAAAGC
AGTGCGCTTGCCTCTGACGATGGGAGGGACTTTCCAAGGGTGGTTGCGTC
TAGAACTGCGTGTAACATTGACACCCTTATGAGGGACGGCATTCTACGAG
GGATGTGAAAGCACAACCCAAGAATGGGACGATGAAATGACAAGAAATTG
CATATTTATGCCTTCGATATTCTCGTGTTCATCTTTTTTGCGTATGCGAG
GTTTTTGTTACTGAAGATGTGGGCTACGAAGTGCATGAGGCGAAAGGAGA
GAGAGCTAGATCGAAGGACATGACGGGCAAGTCCGGGAGGAGTCCGCGAC
TTCTGTTGCTTTCAAGTGCCCAAATAGCCAAAATAGTTCAAAATTTATTG
TACAGAAAATGAACGAACAACCCTCAAGATCGATCT
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protein sequence of rna9725

>rna9725-protein ID=rna9725-protein|Name=rna9725|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MECPCPTRVACDEASLLSMSSSPRPLLSLTSPNPSPSLLAHFPFDLPQRM
DAPPPSLPLSREGNPPSASMGPAPATPASTTSPLTSACRLAAFPLPTGAN
AFPSLMASLEAGSGGGEDREGGGTWATRQSAARYDHGALPPRTLTPSPAC
LSPASLTPKARSSPSPPPPLPPSLPPSLIPSLARIPRRVWRGRRAGGRAG
SGGGGEIGSVPSCAGLPLPRAPQSRW
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mRNA from alignment at KK037255.1:262048..263285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9725 ID=rna9725|Name=rna9725|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp|location=Sequence derived from alignment at KK037255.1:262048..263285+ (Nannochloropsis gaditana)
CGTCCTTACTGTATAAAGGCAACGTGTTGCACGAGCAAAAACAAACGGGT
TTGGAGTGCTTCACCAAATTATGAAGGATTTAATTAATTACGTGCCTGAC
ATACCCCCCATCTCGCCTTCGAGCAGAGAAGAGCGAGACAGACAATTTTG
ACACCAGGACAGCGACAACACCATGTAACTGAATGGAGGTAGCCATACCC
ATGTCTATATGCTTCGAAGAGAATGGGCCTGTATCCATTTACTGGCATGC
TTTTTCAATGTGATAGGCTTGAGAGCAAACGTCAAGATACCTTTGGGCCC
AGGCAAAGAGACGTGCTgccgcctgcctcccgctTTATGTACGCCCTCCC
CGTGAACGCGATCTATAAGACGACTTCATTCCACGTGTACATCCTCTCCT
TGAATGTCAAAGCAGGGCATCGTGTGTGCGTCCTTTCCACGCCGCTCTTG
CAAACCTGCCAACCGACAAAGAGCACTATCGGGTGCGTGCTCTCCGAGAC
GGGCAGGTTCTTAATCCCTCAAACCACAAAAGGTCATGTAAGGGGCTAGG
GTCCACAATGGAATGCCCATGTCCCACACGTGTCGCGTGCGACGAGGCAT
CTTTGCTATCGATGTCATCgtcgcctcgtcctctcctctctttaacctcc
cccaacccctccccttcccttctcgcACACTTCCCTTTCGACCTCCCTCA
GCGCATGgacgcccctcccccctcgctcccccttTCACGCGAAGGCAACC
CTCCTTCTGCCAGTATGGGGCCCGCCCCCGCAACACCCGCTTCGACAACG
TCCCCCCTCACTAGCGCGTGCCGGCTTgcggcttttcccctccccaccgg
aGCCaatgcttttccctccctgatGGCCAgcctggaggcagggagcgggg
gaggggaggatcgggagggcggagggacctGGGCGACGCGTCAGAGTGCT
GCACGCTACGACCAcggggccctccctccaaggaCTCtgactccttcccc
cgcctgcctgtcTCCCGCATCCCTCACCCCCAAGGCCCGaagctccccct
ccccccctccccccctccctccatccctccctccctccctcataccctcc
ctcgcacGGATACCCCGCAGGgtgtggaggggaaggagggcgggagggag
ggcggggtcggggggcggtggggagatTGGGTCGGTGCCGTCATGCGCGG
GCCTGCCCTTGCCACGGGCGCCACAGAGCCGttggtga
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Coding sequence (CDS) from alignment at KK037255.1:262048..263285+

>rna9725 ID=rna9725|Name=rna9725|organism=Nannochloropsis gaditana|type=CDS|length=681bp|location=Sequence derived from alignment at KK037255.1:262048..263285+ (Nannochloropsis gaditana)
ATGGAATGCCCATGTCCCACACGTGTCGCGTGCGACGAGGCATCTTTGCT
ATCGATGTCATCgtcgcctcgtcctctcctctctttaacctcccccaacc
cctccccttcccttctcgcACACTTCCCTTTCGACCTCCCTCAGCGCATG
gacgcccctcccccctcgctcccccttTCACGCGAAGGCAACCCTCCTTC
TGCCAGTATGGGGCCCGCCCCCGCAACACCCGCTTCGACAACGTCCCCCC
TCACTAGCGCGTGCCGGCTTgcggcttttcccctccccaccggaGCCaat
gcttttccctccctgatGGCCAgcctggaggcagggagcgggggagggga
ggatcgggagggcggagggacctGGGCGACGCGTCAGAGTGCTGCACGCT
ACGACCAcggggccctccctccaaggaCTCtgactccttcccccgcctgc
ctgtcTCCCGCATCCCTCACCCCCAAGGCCCGaagctccccctccccccc
tccccccctccctccatccctccctccctccctcataccctccctcgcac
GGATACCCCGCAGGgtgtggaggggaaggagggcgggagggagggcgggg
tcggggggcggtggggagatTGGGTCGGTGCCGTCATGCGCGGGCCTGCC
CTTGCCACGGGCGCCACAGAGCCGttggtga
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Synonyms
Publications