rna9704, rna9704 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9704
Unique Name	rna9704
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1551
Alignment location	KK037255.1:196881..201011 +

Link to JBrowse

Properties


Property Name	Value
Product	aminoglycoside phosphotransferase
Orig transcript id	gnl\|cribi\|Naga_100081g20.748.mrna
Orig protein id	gnl\|cribi\|Naga_100081g20.748
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:196881..201011 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g20	gene9424	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9704	rna9704-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21001.1	cds9673	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:196881..201011+
coding sequence from alignment at KK037255.1:196881..201011+

mRNA sequence

>rna9704 ID=rna9704|Name=rna9704|organism=Nannochloropsis gaditana|type=mRNA|length=1551bp
GCCCCTGCGTGCTTTATTACGGAACAAGCACTATCTGAACCCACTCTGAC
CTTCTCGTTGCGAATATTTACATTTAAGTGTCTCAGATGGAGCCAAGAGA
AGCGCCTGGAGATCCGAGGGGCAGCCACCGGGCAGGAATGGGGCAACAAA
AGGTAAGCTTCTTTCAGTCCCTGATCAGACATCTCGTCCTTGACCTAGCT
GACTGCTGCCCACCGAATGGGGCACAGGAACGTCACCAGTTCAAATCAAA
AGACGAGCTGGACGCTTATTTGCGAGTCGCGCATGAGTCTGTGGCCATAG
GGCGCGAGACCCTCACGGCCGTGGCGGGTCAACAGGAGGCCTTGGACCGC
TCCGAGGCCGTTGTGGACTCCAACCGCTACGTCATTGAGAAGAGTGCTAG
GACCTTGCGGGGCATGACATGGTGGGGATCTCTGCGGAATTATTTCTCTG
AAGAGCCCGAGGCCCCGCGGCCCCGCACATCGACCTGGCTGGCAGATCGG
CGTGCAGGCCTCCGGGGCCCGGGCCAGCAGGCAGGGGAACGGACAGAGGC
CCATTCCAGCGATCCCCCCTTGTGGAGGGATCAACCACGGGACGGCTGCA
GCAATCCAGTCAAGGATGAACGTCAAGAGCTTTTCGCACGGAAGGTCAAT
GGCGAGACCGCCGACGCTCGCCTCAAACGGGCCCATGTGGCCGGGCAGGG
CCCCCAGAGCCTGAGTGAGGTGGCGCGCATGCAGGACGAGTACCTGGAGA
GCCTTGGAAAGAGTCTGGACGAACAGCGGGGCATCGGAAGAACCTTGCAT
GAAGCCTTGAGTGAGCAAAGAGTGCAGGTAGACCGGCTGGAGGCGGGTAG
CGAGGGGCTGGAGGACGCGACTCGGGCCGTAATCCGTAAGGCTGCCCGGG
CATCTAGGGCCCGAGGAGGTTGGGGCGCAGAAAGGCCGAGGCTGTACAAG
TTTGTAGCTTTCCGAGAAGTGCGGTCGGGACTCTTCCTAAGCGTGGCCGG
TGAGGAGCTCCGACTGCAGGAGCCGAACATGAGCAAAGCCTGCCAGTTTG
CGGCCTACACAAGCCAGGCCCTGACGGGCCTCCAGTCCGTTCTTTCCCGG
AAATGGCTTGGCCAGCACTGGATTTCTGGGGCTCTGGGTGTGCGAGGAAC
GGGTCTGGGGAAGAACGAGGAATGGGAGGTTGACTGGCGCCGACCTGAAG
GCGCTTTTTTTCTGTTGTGCTCGGCCAACTGGGGTAGTGGCGGGTACTTG
ATGGCGTTCCCTAAAAAGGATGAGAGACTGGGACAAACGCTGGCTTACGA
TTTGCGCTTGGGTGGATACAATGGAGAAGAGCGAGGGAAGGCCGCGCTTT
TTGAGATTGTTGACTGTGAGAGCTACCGGACTACAGACGTGGTGACAGAA
ATTATACAGAAGAAAACTCCGGCCGAGTTAGCCGCAGAGGAGGAGCGGAA
GCGGCGGGGCTCTCTCATAAGCTTAGGGGCGTTGAGAACAGGGTAATTTA
TGTTAAAAACGCATGTAAAGAAATGTATACATGGCACGTGGATGCTCCAC
T

protein sequence of rna9704

>rna9704-protein ID=rna9704-protein|Name=rna9704|organism=Nannochloropsis gaditana|type=polypeptide|length=663bp
METTDADALERYLPRILPRDFLAPSVSSTSPPTALHIKATKLEGGQSNPT
YLLRLQPSDRQLVLRKKPALVKVASAHAVEREFRVLEALQNSDVPVPPVY
HLCEDASVLGTPFYLMGFVEGRIFRDPTLPGIKTSQERAQYYRAMLATLA
AIHTLDWRKRSLSTFGKPDGGYFARQLKRLKSVMERQAENAGYFPGLQEV
CSDMLLYSEQPGFKMRDQTCLVHGDYKVDNVVFHPTEPRVIAVLDWELST
LGHPMADLANLAMMFFVPAVPRAPVSGLLGLDLEALGIPDEDELVKAYCQ
LVGRSYPDRAWRFYTAFLFFKNAVILQGVEARRQQGVASSKHAIKLLDLA
PILVEIARQHLVEAQERIGQESINNVTQEDKKNNVVVSPVKNIEAWAEEV
LVVVFDWGGVLTRSSPLAAIRNHERRNGLPAGYLSVAIHSAGDEHGLFQM
LERGEVALDDAFLEKWELELTSSRSRRAYVQVAHRVKSAELPIDFRPPYI
NVRALMSQILSASTAIDPAMLAAVRALRSAGVRTALLTNDFRVAPSFFSP
ADPEEFDLWSRLEKTHEIFHDPSIFNFVISSATMRARKPEIRIYEALLQR
LGFSKKSASRVLFLDDIGRNLKAARSIDIKTMLVKEENKAQIVAALEGLA
RAKGGGGRLSPRL

mRNA from alignment at KK037255.1:196881..201011+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9704 ID=rna9704|Name=rna9704|organism=Nannochloropsis gaditana|type=mRNA|length=4131bp|location=Sequence derived from alignment at KK037255.1:196881..201011+ (Nannochloropsis gaditana)
AGCGAACCTATGCCCCGGCGTTCCCCCAGCACACCAGGCAGAGTCATTGT
TGGGGCCCCGAGGCTTGGAGTGCACGGGACAGGGGCCTCGCAGGGTGGGC
CGAGTTTTGGCGAGCGGCGAGAAACGACTTCTGAGGGCTACCCATACTCG
GCAAGCGCGAATTTCACGGCATCAGCACGCCTCCGGGAGCTCGCGGGCCG
GACATTACAACGTTACATGCAGGTTTCGGTTGCaatgggagagaaagcaT
GATAGCTTGAGCCCGAACATCACTTaggctggaggcggacacCGATGGGA
GCGAAGGCGTGCATGGTTGTTTCGAAGCAGTGTCTGAGATCAAGCCTGAG
GCCATGGAGCTCCATATTGGCGCACCATTGCATGTTTCAGTATGAGTTCC
TTGCAACTAATACAAGCTATTTTGAAAGATATATTCGAGGGTGCGGTAGG
AGACCCTCTTAGTCGGGTGCGCCAGAAAGGGTGGGGGACGTGCGGCTGGC
CACCGTGAAAGCCCTCCCTTGAACACGACTGCATCTTATACCACAGAACT
TCAACAATGTTGTTATCGAGGCTTGCTATGCGTCAGCTTTGGCCCCATGT
GGCAAAATCGAAATCGTGCCATCGAAGGGATGAGGTAGATAAATTTTATC
GCCGAGAGACCTGAAGTTTTTCACTGTGAGGGAGGGCTAACCGACATTCA
CGAACTCTATGTATCATATTTTGGAGGTGCAGGAACTTACTTGAATCTTC
GTAAACCATGAGCAAAGATGCTAaagtggagaaggggggagcgaCCGAGC
TAACAGAGGAGCAGATCGCTGGTACGTCCATCTGGTCTAGAGAAGTCCTT
CACTTTCCCTTGCCCATTAACTAGCCACGCTGACCTACTCTTGTGCAATT
CTGCCTGGATGTCACGGAAAACCAGAGTTCAAGGAGGCCTTTTCGCTCTT
CGACAAGGACGGGGACGGGACCATCACCACCAAGGAGCTGGGTACGGTCA
TGCGCTCGCTAGGCCAGAACCCGACGGAGGCCGAGCTGCAGGACATGATT
AACGAGGTGGATGCGGACGGAAACGGGACGATCGACTTTCCCGAATTCCT
GACCATGATGGCGCGCAAAATGAAGGACACggactcggaggaggagatcc
tCGAAGCTTTTAAGGTAGGTAAGGACGGGTGCGCGGGCCTGCCTGACGGG
CGACAAATGATACCCTGGCTCACTTTTTTCTCGCATTTGCTTTTGGGACC
GTCCTTGTTCCCCAGGTCTTTGATAAGGACGGCAACGGATTTATTTCGGC
AGCTGAGCTGCGGCACATCATGACGAACCTTGGAGAAAAACTtacggacg
aggaggtcgATGAGATGATCCGAGAAGCCGACATCGACGGTGACGGTCAG
ATCAACTACGAGGAGTTCGTTAAAATGATGATGGCTAAGTAATTATGATT
CCATATCCGCGCGCCTGGGAGCGAAaaaacagggaaggagaccaCAAGTG
ACGGAGATAACGAGTTACGCCCTTGAAGGAGCATGGAGTCGAATCTAGAC
AGACGGGTCAGCGAGAAGCTGAAAGGAAGGTGACGTGAGGCATGTCGGGA
AACGAAGCCTGAGCGCTTTTCCCGGGAATATGGAACAGTTTCGCAATCTT
TTAAGACCGGAAAGTGAGATCGGTGTATTTGAGTGTCGTCGCGGTATCGA
GCTTGTACCTTTGGCTGACTTATTCATGGTTTTGGATCGATCGAACTTCG
GGGTAAATCGTAGGAATGCTATCTATCCGGTGAGGTtacaaaaaaaggga
gaaaaaaaatgcagcaTGTCGATATTCCCTTCTCTTGTTTTCATTTTATC
AAAATCAGCGCCACGCATAAGCTCGCTGTCTTATCACATCTGCATATGGT
TGTGGGAGATCAACAAGCATATAATACTGTGGAATACACCAGGAACCTGC
CGGAATCCGCCCCGACCgctttttcaaattttcacTCGCATTCATCTTGA
GGCTTTCTTCGTCACAAGTCTAATCCATCATAAATATCCGCATGCATAGG
TATGGAGACTACTGATGCTGATGCGTTGGAACGTTATCTGCCACGAATCC
TGCCCCGCGATTTCCTAGCCCCGTCAGtctcttcaacctccccacccact
gCACTGCACATTAAGGCAACGAAgctggagggcgggcagtCGAATCCCAC
GTATTTGCTCAGGCTTCAACCCTCTGATCGTCAATTGGTTCTCCGTAAGA
AACCTGCGCTTGTCAAAGTAGCTTCCGCTCATGCCGTAGAGAGGGAATTT
CGTGTTCTTGAGGCCTTGCAAAATTCAGACGTGCCCGTTCCTCCCGTCTA
CCATCTCTGTGAAGATGCTTCGGTTTTGGGCACTCCCTTCTACCTAATGG
GTTTCGTTGAAGGGCGCATCTTTCGGGATCCGACTTTGCCAGGCATAAAG
ACCTCTCAAGAGCGGGCACAGTATTACCGGGCGATGTTAGCCACCCTGGC
AGCTATCCATACGTTGGATTGGCGGAAGCGGTCCTTGAGCACGTTCGGAA
AGCCAGATGGAGGATACTTTGCTCGACAATTGAAACGTTTGAAAAGTGTG
ATGGAAAGACAGGCTGAAAATGCTGGATACTTCCCAGGTTTGCAAGAAGT
GTGCTCGGACATGTTGCTCTATTCTGAGCAGCCAGGCTTCAAAATGAGGG
ACCAAACTTGCCTGGTTCACGGGGACTACAAGGTCGACAACGTGGTCTTT
CATCCCACGGAGCCTCGCGTCATCGCTGTGCTAGATTGGGAACTCTCCAC
GCTGGGCCACCCTATGGCTGACCTGGCCAACCTCGCCATGATGTTTTTCG
TCCCAGCCGTTCCCCGGGCTCCTGTCTCTGGCCTGCTTGGACTGGATTTG
GAGGCTCTGGGGATTCCTGATGAGGATGAGCTGGTGAAAGCGTATTGTCA
ACTAGTCGGACGTTCCTACCCAGACAGGGCATGGCGCTTTTACActgcct
ttctcttttttaaaaacgcGGTAATCTTGCAGGGTGTGGAAGCACGGCGG
CAACAAGGCGTAGCCTCAAGCAAGCATGCAATTAAATTATTGGATCTAGC
TCCCATTCTCGTTGAAATTGCCAGACAGCATTTGGTTGAGGCACAGGAGA
GAATTGGACAGGAAAGCATTAACAATGTGACACaagaggacaagaagaac
AATGTGGTGGTTTCTCCAGTCAAGAACATTGAGGcatgggcggaggaagt
TTTGGTCGTGGTCTTTGATTGGGGGGGCGTCCTGACccgctcctcgcccc
tcgccGCTATCCGGAACCACGAACGTCGGAACGGCCTGCCTGCGGGCTAT
CTCAGCGTGGCAATTCACTCAGCCGGTGACGAACATGGCCTCTTCCAGAT
gttggagaggggagaagtaGCGCTAGACGATGCTTTTCTTGAAAAATGGG
AACTAGAGCTCACATCCTCACGCAGTCGGCGGGCTTATGTACAAGTAGCG
CACCGCGTAAAATCCGCGGAGTTACCGATCgacttccgccctccctacat
TAACGTCCGTGCACTCATGTCTCAAATACTATCTGCCTCAACAGCCATAG
ATCCCGCTATGCTTGCCGCTGTGCGAGCCTTGCGTTCTGCGGGGGTGCGT
ACCGCTTTGCTAACTAACGACTTTCGTGTGGCGCCCAGTTTTTTTTCTCC
AGCCGACCCAGAAGAATTCGACCTTTGGTCTCGTTTGGAAAAGACTCACG
AGATCTTTCACGACCCATCAATTTTTAACTTTGTAATATCCTCGGCGACA
atgcgggcgaggaagcccGAGATACGAATCTATGAGGCGCTCCTCCAGAG
GCTGGGATTTTCGAAGAAGTCAGCGAGTCGAGTATTGTTCTTGGATGATA
TCGGCCGTAATCTCAAGGCTGCAAGGAGTATAGATATTAAAACTATGCTC
GTCAAGGAAGAGAACAAAGCGCAAATAgtggcggcgctggagggTTTGGC
AAGGGcaaaaggtggaggcgggaggttgaGTCCGCGGCTATAGACAGACC
ATGCGAATGACTACAGGAACGGATGACCATGTTTGAACATGCCGACCAAT
aacgaaagaaaaatgagctGTGGTACAGACG

Coding sequence (CDS) from alignment at KK037255.1:196881..201011+

>rna9704 ID=rna9704|Name=rna9704|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at KK037255.1:196881..201011+ (Nannochloropsis gaditana)
ATGGAGACTACTGATGCTGATGCGTTGGAACGTTATCTGCCACGAATCCT
GCCCCGCGATTTCCTAGCCCCGTCAGtctcttcaacctccccacccactg
CACTGCACATTAAGGCAACGAAgctggagggcgggcagtCGAATCCCACG
TATTTGCTCAGGCTTCAACCCTCTGATCGTCAATTGGTTCTCCGTAAGAA
ACCTGCGCTTGTCAAAGTAGCTTCCGCTCATGCCGTAGAGAGGGAATTTC
GTGTTCTTGAGGCCTTGCAAAATTCAGACGTGCCCGTTCCTCCCGTCTAC
CATCTCTGTGAAGATGCTTCGGTTTTGGGCACTCCCTTCTACCTAATGGG
TTTCGTTGAAGGGCGCATCTTTCGGGATCCGACTTTGCCAGGCATAAAGA
CCTCTCAAGAGCGGGCACAGTATTACCGGGCGATGTTAGCCACCCTGGCA
GCTATCCATACGTTGGATTGGCGGAAGCGGTCCTTGAGCACGTTCGGAAA
GCCAGATGGAGGATACTTTGCTCGACAATTGAAACGTTTGAAAAGTGTGA
TGGAAAGACAGGCTGAAAATGCTGGATACTTCCCAGGTTTGCAAGAAGTG
TGCTCGGACATGTTGCTCTATTCTGAGCAGCCAGGCTTCAAAATGAGGGA
CCAAACTTGCCTGGTTCACGGGGACTACAAGGTCGACAACGTGGTCTTTC
ATCCCACGGAGCCTCGCGTCATCGCTGTGCTAGATTGGGAACTCTCCACG
CTGGGCCACCCTATGGCTGACCTGGCCAACCTCGCCATGATGTTTTTCGT
CCCAGCCGTTCCCCGGGCTCCTGTCTCTGGCCTGCTTGGACTGGATTTGG
AGGCTCTGGGGATTCCTGATGAGGATGAGCTGGTGAAAGCGTATTGTCAA
CTAGTCGGACGTTCCTACCCAGACAGGGCATGGCGCTTTTACActgcctt
tctcttttttaaaaacgcGGTAATCTTGCAGGGTGTGGAAGCACGGCGGC
AACAAGGCGTAGCCTCAAGCAAGCATGCAATTAAATTATTGGATCTAGCT
CCCATTCTCGTTGAAATTGCCAGACAGCATTTGGTTGAGGCACAGGAGAG
AATTGGACAGGAAAGCATTAACAATGTGACACaagaggacaagaagaacA
ATGTGGTGGTTTCTCCAGTCAAGAACATTGAGGcatgggcggaggaagtT
TTGGTCGTGGTCTTTGATTGGGGGGGCGTCCTGACccgctcctcgcccct
cgccGCTATCCGGAACCACGAACGTCGGAACGGCCTGCCTGCGGGCTATC
TCAGCGTGGCAATTCACTCAGCCGGTGACGAACATGGCCTCTTCCAGATg
ttggagaggggagaagtaGCGCTAGACGATGCTTTTCTTGAAAAATGGGA
ACTAGAGCTCACATCCTCACGCAGTCGGCGGGCTTATGTACAAGTAGCGC
ACCGCGTAAAATCCGCGGAGTTACCGATCgacttccgccctccctacatT
AACGTCCGTGCACTCATGTCTCAAATACTATCTGCCTCAACAGCCATAGA
TCCCGCTATGCTTGCCGCTGTGCGAGCCTTGCGTTCTGCGGGGGTGCGTA
CCGCTTTGCTAACTAACGACTTTCGTGTGGCGCCCAGTTTTTTTTCTCCA
GCCGACCCAGAAGAATTCGACCTTTGGTCTCGTTTGGAAAAGACTCACGA
GATCTTTCACGACCCATCAATTTTTAACTTTGTAATATCCTCGGCGACAa
tgcgggcgaggaagcccGAGATACGAATCTATGAGGCGCTCCTCCAGAGG
CTGGGATTTTCGAAGAAGTCAGCGAGTCGAGTATTGTTCTTGGATGATAT
CGGCCGTAATCTCAAGGCTGCAAGGAGTATAGATATTAAAACTATGCTCG
TCAAGGAAGAGAACAAAGCGCAAATAgtggcggcgctggagggTTTGGCA
AGGGcaaaaggtggaggcgggaggttgaGTCCGCGGCTATAG

Synonyms

Publications