rna9691, rna9691 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9691
Unique Name	rna9691
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	961
Alignment location	KK037255.1:169884..170964 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100081g7.741.mrna
Orig protein id	gnl\|cribi\|Naga_100081g7.741
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:169884..170964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100081g7	gene9412	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20994.1	cds9660	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9691	rna9691-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:169884..170964-
coding sequence from alignment at KK037255.1:169884..170964-

mRNA sequence

>rna9691 ID=rna9691|Name=rna9691|organism=Nannochloropsis gaditana|type=mRNA|length=961bp
GCGAGTGGTCATGTGGGTGCTGCTGCGGGCTTTGATCGAAGCCGGCAAGT
TCCCACTCCGAGAGGAAGCACCCCTCGTGCTGCGTTTGGTCGAAGAGGGC
CCGCTAGAGCTCACAGAGGCCGTGTTGGCCGGGCCGGGGGAGGTGTCGGA
GCGGACGATTGTCTGCCTGCTCCGTCGGCTCCTCCGCCCGCAGGAGCACC
TCCTAACCCCCATTAGTGCCTCGTCACCGGCCACGCAAGAGCACAGAGAT
GCTGGGCAACCTCATAAGGGAGATGAGGAGGGGATCCCAGCGCGGGAAGT
GGCGAGACTGGCGGGGCTGGCTGTCCGCAGACCCTGCTGTCGAGCCTTCC
TGCGCACTGCCCTCGCCGTGGAAATGGACGGCCCCAGCGCTGCCTTGCTG
CTCGTGCTGCTACAGGCGCTTTTGGAAGAGGCTGTGGGCGCGGGCGGGAA
AGGAAGGCCAACGGAGGAAGCGGTGTTGACCTGGCTGGAGAGCCTGCTGG
ACGCCAAGTTTGTGGCCTTGGTAGTGGAGGGGAAGCGGGAGAGAGCGGGA
GAGGCATGGGGGGACGAGGGGGTCCTACGCCGGGTGCTGGCCTCGACGCA
AGAAAGAATTCAAGCGGCGGCGCTCTCGTGCCAGGCCTTGGAGGTCGTGG
AGGGCTACATCGCGCAATTCAGACGGGCGGGAGAGAGCCTGCAGGTGATC
CCGGATTACTCCTTGGACGTGCTCCCAGTCTAAGCCCCATGTCAAGGTAA
TGCTTGAACAGGGATGGCACCGGCGGGGCGGGGTAGGATATTTGCATAGG
GGAGCTGCCGCCCTTCATTCCGGAGGGTGGAAGAGACGAGCGTGGTGGTG
GATCGGGAACTTGGTTCACAGACTACGAAATAGAGGGGATCTGTAAGAGG
CATAACAGGTGCCTCCCACAAATCCAGCGCAAAGCATCAGAGAAACGAAA
TGAAATCATCC

protein sequence of rna9691

>rna9691-protein ID=rna9691-protein|Name=rna9691|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MAMAAGMRSRSKNPVVFTEVGKVEISGKPVGLDWVGGRGEHFLFTSPSQV
LLYSAFDGTRQREWSFRPNKSLAFSSAVVAASAQGLLLGVQGRRRLVAWP
DKASQTGWGGSGPEGLTSVETAFDVSKLDVSAAGMAWCSGQSKQGQELRV
ACYSTVGRSALTLVSDWASEGPGALSASLAHGQLPLLLALTTDATLYALC
CPDPPSEKGREATSPSVLSTSLSLPPPPT

mRNA from alignment at KK037255.1:169884..170964-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9691 ID=rna9691|Name=rna9691|organism=Nannochloropsis gaditana|type=mRNA|length=1081bp|location=Sequence derived from alignment at KK037255.1:169884..170964- (Nannochloropsis gaditana)
AAAACTTACTTTCTTTGGCGGACAGGGACTGCATCTGGACGATTGGCCTC
AAGCCAGCAGGCTCTCATCATCCTAGGAAGCAGCACTGAGTGAGGAGGGT
ATGGCCATGGCTGCAGGAATGCGGAGCAGAAGCAAGAATCCTGTAGTCTT
CACAGAAGTCGGTAAAGTCGAAATATCGGGCAAGCCGGTCGGTTTGGACT
GGGTTGGGGGCCGGGGGGAGCACTTCCTCTTCACGTCGCCGTCCCAGGTG
CTCCTGTACAGCGCGTTCGACGGGACTCGACAACGGGAGTGGTCGTTTCG
GCCCAACAAGAGCTTGGCCTTCTCCTCGGCAGTAGTCGCAGCCTCAGCGC
AAGGTCTTTTACTGGGGGTGCAAGGGCGACGCAGGCTGGTGGCATGGCCG
GACAAGGCGAGCCAGACTGGGTGGGGGGGGTCCGGGCCGGAGGGATTGAC
GAGCGTGGAGACGGCATTCGATGTGAGCAAGCTGGACGTGAGTGCCGCAG
GGATGGCCTGGTGCTCGGGCCAATCGAAGCAAGGGCAAGAGCTCCGCGTC
GCCTGCTACTCGACGGTGGGACGATCTGCGCTGACCTTGGTGTCCGATTG
GGCTAGTGAGGGCCCGGGGGCCTTGTCCGCCAGCCTCGCCCACGGCCAAC
TCCCCCTCCTCCTTGCTCTGACCACAGATGCGACGCTGTATGCCCTTTGT
TGTCCAGACCCTCCGTCGGAAAAGGGGCGTGAGGCGACGTCTCCTTCTGT
GCTGTCGACCTCGCTCTCGCTCCCCCCCCCCCCGACGTAGAGGGCGCATG
CATGCAGACGGCTGGGATGATGTGGAGCCGGCTGGTGCCGGAGACTGCCT
TCGTGTGGGCCGTGTGGGTGGGGGAGGGGGATTTCCAGGTCATGCGCATG
TTTCGCGTCAGCCTGGGGAAGCATCCCCGCCTTGACATCTCCTTGAGGGC
CGTCCCCCTCTACTCCACAACACTCCAACGCCCGCCCCGAGGTGCCGCCT
CGCCCTCGGTCAACAGGCGTGGAAGCTTGTCCTCGCCCGTACCCCTGCGT
CCCGCGGTGACGGCTGTCGGTTCGGAGGCCC

Coding sequence (CDS) from alignment at KK037255.1:169884..170964-

>rna9691 ID=rna9691|Name=rna9691|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at KK037255.1:169884..170964- (Nannochloropsis gaditana)
ATGGCCATGGCTGCAGGAATGCGGAGCAGAAGCAAGAATCCTGTAGTCTT
CACAGAAGTCGGTAAAGTCGAAATATCGGGCAAGCCGGTCGGTTTGGACT
GGGTTGGGGGCCGGGGGGAGCACTTCCTCTTCACGTCGCCGTCCCAGGTG
CTCCTGTACAGCGCGTTCGACGGGACTCGACAACGGGAGTGGTCGTTTCG
GCCCAACAAGAGCTTGGCCTTCTCCTCGGCAGTAGTCGCAGCCTCAGCGC
AAGGTCTTTTACTGGGGGTGCAAGGGCGACGCAGGCTGGTGGCATGGCCG
GACAAGGCGAGCCAGACTGGGTGGGGGGGGTCCGGGCCGGAGGGATTGAC
GAGCGTGGAGACGGCATTCGATGTGAGCAAGCTGGACGTGAGTGCCGCAG
GGATGGCCTGGTGCTCGGGCCAATCGAAGCAAGGGCAAGAGCTCCGCGTC
GCCTGCTACTCGACGGTGGGACGATCTGCGCTGACCTTGGTGTCCGATTG
GGCTAGTGAGGGCCCGGGGGCCTTGTCCGCCAGCCTCGCCCACGGCCAAC
TCCCCCTCCTCCTTGCTCTGACCACAGATGCGACGCTGTATGCCCTTTGT
TGTCCAGACCCTCCGTCGGAAAAGGGGCGTGAGGCGACGTCTCCTTCTGT
GCTGTCGACCTCGCTCTCGCTCCCCCCCCCCCCGACGTAG

Synonyms

Publications