rna9687, rna9687 (mRNA) Nannochloropsis gaditana

Overview
Namerna9687
Unique Namerna9687
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1306
Alignment locationKK037255.1:159441..160924 +

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100081g3.756.mrna
Orig protein idgnl|cribi|Naga_100081g3.756
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:159441..160924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100081g3gene9408Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9687rna9687-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21009.1cds9656Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9687 ID=rna9687|Name=rna9687|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp
GCTGTCACTTGCCTCTACGTCTGGAAAGAGCTATTAGGAGCATCAATAAT
ATAATACACCGGGACAACAGGATACGGGAAAGGGGCTGACTCGACCTCCC
TTCTGACTTACAACACATTCCCTGACGCCTTGTACCACTCTTTGTCCACA
CAATAATCCAGAGCATGTTCCGCTTCCAAAGCTGTGCACGTCAGGCTGCG
AGGAGAGCTTTTGTCTCGGCCGCAAGCATGGCCCCACGGGCTCATCAGGC
TCCTCATTTCGTAGCTGCCGGCATCACGGGGGCAGGAACATGCCTCCTCC
TAGCGCACTCCATGCCAGCCCAGGCTGACGCCGCCCTTCCTGCCACTGAT
ACCTCCTCCGCCTCCCCCTCTACCTCCTTCACCATCACTGCCCGCCTCTC
CAAATCGGGCGCCTCAAAAGAGGAAAAAGCGAAGCCTTCCCAAAGCAGTA
GCAGCAGTGAGCCGCACCCCGCGAGCCCGGAGGGCAGACCGCTCACCCCT
GCAGGTGATATCGCCGCCGTGCTCTCCGAGATGGAGGAGGAGGACGAAGG
AAGATACGACTCAGTAGAGCTGGAGGAGACAGAGTGCCCCCTCTGTCATT
TTATGCGGGCAAGTCCATGCGGTGCCACCTGGGTGCGGTGGGAGAAGTGC
ATCCACTTCCACAAGAGTAAGGAGGAGGACTTCGTGGGGCCCTGCGCCCG
TGTCACGCTGAAATTGGCCGAGTGCATCCAGCAGCATCAGAACGACTTCC
CGCCGACGTTGAGGAATGCCTTGTTGGGAGGTGCGGATGTCGAAGAGGGC
GAGGGGGATGAAGCGGAAGAGAAAGATGGCGCGAAAGGCGTGACGGAGGG
GGGGGACAAAGACAGGGGAGAAGACATCCTGCAGTCGTCTTCCACTTCAT
CCACCGGCGGCAAGAGTGATAGGCTGAAGAAGAACTTCACGCTTCACGAG
GACCACGAAGAGACTGATCAGTCGGAAGGTGACGAGCATCCGGTCAAGAG
CGCATCCCCAGGAGCGTTACCTCCCTCCCGGTCCCCCAACGGGGCTGAGG
AAGGAGAGAGCGAGGACGGAAATGCGGAGGGCCCGATAAAAAAGTAGACA
CTTGACCGAGGTATTCAGGCATCGTTTTATGGGCAGTATATTTTCAATCT
TGATGTTTTGTTTTTTTCCTTACTTCCTGCCCTCGGAGCTCCTTATGCAC
CTTTCCCCCACAGTGTGAGCCATTAATCTCATAACAACACGGTATTGGGT
ACTTTCAGTAGCGCAGTGTATTAATGAGCGCCCTATCAAAATGAAACAAG
GGTCTA
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protein sequence of rna9687

>rna9687-protein ID=rna9687-protein|Name=rna9687|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MAARETSPFQAADAPIWRPEMAVRQNPYRYLDHQKGTIGILDIRLIDGRD
LDSTGRGESGRSASVSPQVVIRVPAEEARSSVVPRNAHPSWQERFTMNLK
KGVLQEGAPVLVVFQALDAASWRSPLGGSKGRDLGSGSLDILPLLNGSRG
SHVMDEWVSLSPGPGRLHVVVEYEPVGMVPEMDDVVFFEAFARSPRSLVL
PTNEPMVVRAVSGAYLLVGFRTPTARQARGPEAAPECRLRVHRQTVFVIE
RHTLLDAAWHSVIDAADMVQAVPPVRWAKKQLQPYAKYAQVLARPALTSL
HVTFAAARLAMRSGMAALGGATSTVFGDD
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mRNA from alignment at KK037255.1:159441..160924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9687 ID=rna9687|Name=rna9687|organism=Nannochloropsis gaditana|type=mRNA|length=1484bp|location=Sequence derived from alignment at KK037255.1:159441..160924+ (Nannochloropsis gaditana)
CCGTGATGTTTTTGGAGGCTTTACAATGGGattcctccacgcctcccttg
cTGCTGTGCGTGCATTATGCCAGCCCTTCTCGTGCACTGACGCTCTCCGA
ATCAATTTAACAGGAGGAGTAGAAGGCCTGTTAAATTGGTGGGCCGCAGA
GGGTGACTTTGCTTTGCGAAGTCCGTGCTCGCGACCTTGGCCTTGAACGT
GCACTATGGCAGCTCGCGaaacctcccccttccaagcCGCAGATGCTCCC
ATTTGGAGACCGGAAATGGCGGTGCGGCAAAATCCGTACAGGTACCTGGA
CCATCAGAAAGGCACGATTGGCATCCTAGACATCCGGCTCATAGACGGCC
GTGACCTGGACTCGACGGGAAGAGGCGAGTCCGGGCGGAGTGCGAGCGTC
TCCCCTCAAGTCGTAATACGAGTCCCCGCCGAGGAGGCCAGATCCTCGGT
GGTTCCCAGGAATGCCCACCCGTCCTGGCAAGAGCGCTTCACCATGAATT
TGAAGAAAGGTGTGCTCCAAGAAGGTGCGCCAGTCTTGGTTGTCTTCCAG
GCATTGGATGCCGCATCGTGGCGGAGCCCGCTGGGGGGAAGCAAGGGCCG
CGACCTGGGCTCCGGCTCCTTGGACATTTTGCCCCTCCTGAACGGGTCGC
GCGGTAGCCACGTGATGGACGAGTGGGTCTCGCTCAGTCCGGGGCCCGGG
CGCCTgcacgtggtggtggagtaCGAGCCCGTGGGCATGGTGCCGGAAAT
GGACGACGTGGTCTTCTTCGAGGCCTTcgcgcgctctcctcgctccctgg
tcctccccACGAACGAGCCCATGGTCGTGCGGGTGAGTGCTTGACAAGGG
ACAGAGAGCGGGGGCGGGCCTGTCGCCTCGTGGGAAACTCGCCGGTCCTT
TCGATTCCCTGACCCACCcctatcccctccctcccccctccccctccctc
cctcccttcctccctttcccctttaaCTCCCTCAActcactccccctccc
tccctcccttccttcccccccgttatacctccctcccactcccaggCGGT
CTCCGGTGCCTACCTCCTGGTCGGCTTCCGCACCCCCACCGCCCGACAGG
CCCGCGGCCCCGAGGCGGCGCCCGAGTGCCGGCTCAGGGTGCACCGGCAG
ACAGTCTTCGTGATCGAGCGGCACACCCTCCTGGACGCGGCCTGGCACTC
GGTCATAGACGCGGCCGACATGGTGCAGGCCGTTCCCCCCGTTCGCTGGG
CCAAGAAGCAGCTCCAGCCCTACGCCAAGTACGCCCAGGTGCTCGCGCGG
CCtgccctcacctccctccacgtcacCTTCGCGGCGGCGCGCCTGGCCAT
GCGGAGCGGGATGGCGGCCTTGGGGGGGGCGACCAGCACCGTCTTCGGGG
ATGACTAGGgcgcgagggggaagacggagggcgtGTAAATAAGACAAGGT
GGGAGGTAGAGATGGAGCGGGGGTGggtcaaggg
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Coding sequence (CDS) from alignment at KK037255.1:159441..160924+

>rna9687 ID=rna9687|Name=rna9687|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at KK037255.1:159441..160924+ (Nannochloropsis gaditana)
ATGGCAGCTCGCGaaacctcccccttccaagcCGCAGATGCTCCCATTTG
GAGACCGGAAATGGCGGTGCGGCAAAATCCGTACAGGTACCTGGACCATC
AGAAAGGCACGATTGGCATCCTAGACATCCGGCTCATAGACGGCCGTGAC
CTGGACTCGACGGGAAGAGGCGAGTCCGGGCGGAGTGCGAGCGTCTCCCC
TCAAGTCGTAATACGAGTCCCCGCCGAGGAGGCCAGATCCTCGGTGGTTC
CCAGGAATGCCCACCCGTCCTGGCAAGAGCGCTTCACCATGAATTTGAAG
AAAGGTGTGCTCCAAGAAGGTGCGCCAGTCTTGGTTGTCTTCCAGGCATT
GGATGCCGCATCGTGGCGGAGCCCGCTGGGGGGAAGCAAGGGCCGCGACC
TGGGCTCCGGCTCCTTGGACATTTTGCCCCTCCTGAACGGGTCGCGCGGT
AGCCACGTGATGGACGAGTGGGTCTCGCTCAGTCCGGGGCCCGGGCGCCT
gcacgtggtggtggagtaCGAGCCCGTGGGCATGGTGCCGGAAATGGACG
ACGTGGTCTTCTTCGAGGCCTTcgcgcgctctcctcgctccctggtcctc
cccACGAACGAGCCCATGGTCGTGCGGgCGGTCTCCGGTGCCTACCTCCT
GGTCGGCTTCCGCACCCCCACCGCCCGACAGGCCCGCGGCCCCGAGGCGG
CGCCCGAGTGCCGGCTCAGGGTGCACCGGCAGACAGTCTTCGTGATCGAG
CGGCACACCCTCCTGGACGCGGCCTGGCACTCGGTCATAGACGCGGCCGA
CATGGTGCAGGCCGTTCCCCCCGTTCGCTGGGCCAAGAAGCAGCTCCAGC
CCTACGCCAAGTACGCCCAGGTGCTCGCGCGGCCtgccctcacctccctc
cacgtcacCTTCGCGGCGGCGCGCCTGGCCATGCGGAGCGGGATGGCGGC
CTTGGGGGGGGCGACCAGCACCGTCTTCGGGGATGACTAGATGGCAGCTC
GCGaaacctcccccttccaagcCGCAGATGCTCCCATTTGGAGACCGGAA
ATGGCGGTGCGGCAAAATCCGTACAGGTACCTGGACCATCAGAAAGGCAC
GATTGGCATCCTAGACATCCGGCTCATAGACGGCCGTGACCTGGACTCGA
CGGGAAGAGGCGAGTCCGGGCGGAGTGCGAGCGTCTCCCCTCAAGTCGTA
ATACGAGTCCCCGCCGAGGAGGCCAGATCCTCGGTGGTTCCCAGGAATGC
CCACCCGTCCTGGCAAGAGCGCTTCACCATGAATTTGAAGAAAGGTGTGC
TCCAAGAAGGTGCGCCAGTCTTGGTTGTCTTCCAGGCATTGGATGCCGCA
TCGTGGCGGAGCCCGCTGGGGGGAAGCAAGGGCCGCGACCTGGGCTCCGG
CTCCTTGGACATTTTGCCCCTCCTGAACGGGTCGCGCGGTAGCCACGTGA
TGGACGAGTGGGTCTCGCTCAGTCCGGGGCCCGGGCGCCTgcacgtggtg
gtggagtaCGAGCCCGTGGGCATGGTGCCGGAAATGGACGACGTGGTCTT
CTTCGAGGCCTTcgcgcgctctcctcgctccctggtcctccccACGAACG
AGCCCATGGTCGTGCGGgCGGTCTCCGGTGCCTACCTCCTGGTCGGCTTC
CGCACCCCCACCGCCCGACAGGCCCGCGGCCCCGAGGCGGCGCCCGAGTG
CCGGCTCAGGGTGCACCGGCAGACAGTCTTCGTGATCGAGCGGCACACCC
TCCTGGACGCGGCCTGGCACTCGGTCATAGACGCGGCCGACATGGTGCAG
GCCGTTCCCCCCGTTCGCTGGGCCAAGAAGCAGCTCCAGCCCTACGCCAA
GTACGCCCAGGTGCTCGCGCGGCCtgccctcacctccctccacgtcacCT
TCGCGGCGGCGCGCCTGGCCATGCGGAGCGGGATGGCGGCCTTGGGGGGG
GCGACCAGCACCGTCTTCGGGGATGACTAG
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Synonyms
Publications