rna9685, rna9685 (mRNA) Nannochloropsis gaditana

Overview
Namerna9685
Unique Namerna9685
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2545
Alignment locationKK037255.1:156421..157156 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100081g1.764.mrna
Orig protein idgnl|cribi|Naga_100081g1.764
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:156421..157156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100081g1gene9406Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9685rna9685-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21017.1cds9654Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9685 ID=rna9685|Name=rna9685|organism=Nannochloropsis gaditana|type=mRNA|length=2545bp
TCCCTGAGTGGGGGCGGTCTCAGGCCCCCGGAGTCAGGGGAGATGTCGAT
AATACTCGAGTCCGATGCGGCCAAGCCAGCTTGCTCCTGGTCCGTGCCCT
GCACCCTCATCGCTCACGCCTCGCTTAATTTCGAGGAGGAAAGCCCGCTC
ACGCTGCACTTATCATCGACGACATATTAATTGTGCCCGACAGGAGCGAT
CGTCGTCCCCGGCCTACCGCAGCTTGGCGTGGACGTGGTGCGGGCACAGG
GGGCGTCGCAAACACCCGAAGGAGGCGCACAAAGCGGAACATACAGGCTC
CGCTGGCATGCTTCAAGGGGCCGCTGGCGCGACCGAATAATCGGTGGGGG
TTGAAACATGGCCTCCACCATCTCGTTGCAGCTTTTTTGGCCAGAGGGGG
CAGGTGGAGAGGGGGTGACAGGCTCGTCCGGGGGCGAGGGGGGGGCAGGA
GCGATCCAAGGGCGGGGATGGAGGGCGGAGAACCTCTACGGATGGTGGCG
CCAATTGGAGCTTGAGGAAGGAGACAACCCAGAAAGGTTGGTGTACCAGG
TGGTGGTTTCCTCGGTGGGACCTTCCGGTTTGAGGGTGGGGGAGGAAGGA
GGAAAGGAGGAGGAGGAGGAGGAGGAGGGAGGAAGAGAGGGCGAGGAGGG
TGCCTGGCGCCCGTGTCGCAGTCATGGACCGTCTCCACCTCCAAAAGCCT
CTGCGCCCGTCCTTCTCGGTCAGTGCCTCCCTTCCTCCGCCCCCTCCGTC
CCCATCCATCGGCCCAGGCTGCGCCGGAGAGGAAGGTTCCGGCTGCGGGT
GCGGCGAGGCCCCCGCTTGCTTGTGGAAGTCCTCTTCCTTCCCGTCCCTC
CACCTCCCGCCTCCACCGCCCTGGACGTAACCCTGGTGCTGTACGCGCCG
CACGCCTTTGCGCATCGCCCTTCCTCCCTCGTCCTTCCTGTGCCATCGCG
CCCCCACCCCTCCCTCATCCCCACCCTCTCCTGCCACCAGGCGCAGGGGA
AAGGAGGCCGGGGAGGGACGGCTTTGCAATGGGCACTCTGGCGCCTGCAG
GGGAGCTCCTTGTCCATGCCCTGCCAGGGAGGGAGGGAGGGAGGGAAGGA
GGGAAAGAGGGGCGGGACGCGGGTCAAGGACGGGACGAGGGAAGCGGAGG
AGGGAAAAGGAAGAGAAGGAGTGAGCGGCAGGAGAAAAGAAAGGGAGGCA
GTGCTTCCTGCCCTCTCCGCCCACAGCCTGCTGGCCGCCCATCTCCTCCG
CCGGGGACAGGTCTGGCTCTCCCTTCTGCCCCGCCCTCCCCCCCGCCCTC
CCCCCGCCCTGCTCTCCTCCCCCCGGATTCCGCCTCCCTCCCCCCCCGTC
CCTCCGACCCTCACGAGAGGAGCAACCAGTTGCGAGCCCGCCTTCCCTTC
CTCCTTCTCGACCACGTCCTCGGCCTCTTCCTCGCCCTCGCCTTCTTCCC
TTCCCATCACCTCCCCCCTTTCCTCGCCTTTCTGCCCCATCACCAGGACC
CCCTCCCCCTCTCTTCCCTCGACGCCTCCCCCTTCTCCCTCATCTCCCTC
CAAACCGCCCTCGCCCGCCTCCTCCAGCACCCCGGCGGCTTTAAACTCAA
CCTCCCCCTCACCCATCGCCTCAACGCTCTCCTCCTCCTCCTCGCCCACC
TGCTCTTCCTCCCTTCCTTCCTCCTCGCCCCCTCCCCCGCCCTCCGTCCC
CTCCTCCTCCTCGGATTAGGGGCCCTTGGCGGGCTCTCCGCCCTCCTCGC
CCTCGCCTTCGACCTCTGCCGCCTCCACACCCTCCCCGCCCGCTCCCTGT
TCCAGGTGACGGCCCGCATCTACAGCCTCGAGCTCTCCCTCCTCGGGGCC
TTCTGGCGCCTGTTCCGCGGGCAGAAGAAGAACATTTTGCGCGGGCGGAT
CGATTCTCTTTGGATCGCGAGTCCCTCTCCTCCTCCCCCCCGTCCTTCTC
CTCCTCCTCCTCGACCAGGCTGTGATGAGTCGGGAAGGGCCCGGAGGGAA
GGTGCGGTGGGCGGGCAGGAGGAAAACTGGTCAAAATCAGGCGAGGGTAG
AGGGGATGGAGGGGAAGGAGAGCGGTCCACGGTGGTGGGGAGGAGCCGAG
GGAGGGCGGGGGGGAGGGCGGGGTCGAGCACGCCGCAGCTGTTGCTGGGA
ACCCTCCTCTTTACGGTACTGGCTCTGCTCTTCCTGACCGTGACGGGCCT
CTTCACAGTCCTACTGGGCCTACAGGCGCGGGCGGTAGGCCTTCAGGTGC
TCCTGTGGGCGCTCTTTGTCATGTGGAGGGAGGGACCGTGGGGTGGGTAC
GGTGGGATGGAGGGAGGGACGGAGGGAGGGGAGATCGGGGTGATGGTACA
GGTGCTAGGCGGGGAAGGAGAGGAGGACAAGGAAGGGGGGAAGGGGGGAG
GGGAGGGAGGGGAGGAGAGCGTGGTTCGCGTCTACGGCGGGTGTGAGCTG
CCGGTAGAGGAGGGACCAAGCGAAGAGGATGGAGGGAGGGAGGGTGGGGA
TGGGGGAGGGAGGGAGGCGCGAGAGGCCCCGCAAGGCCCAGCCCT
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protein sequence of rna9685

>rna9685-protein ID=rna9685-protein|Name=rna9685|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
AACFSECIYSSSNGSLVSFLGRHSGGRTREGGGCGGGGGSGGGFVKLAGE
EGGREGGGVLRGDSGAGCRGEEGLGGESEGGKHREAGAKAGCSAEAMIAG
RRGVGEWRAARTSGG
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mRNA from alignment at KK037255.1:156421..157156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9685 ID=rna9685|Name=rna9685|organism=Nannochloropsis gaditana|type=mRNA|length=736bp|location=Sequence derived from alignment at KK037255.1:156421..157156+ (Nannochloropsis gaditana)
GCGGCTTGTTTCTCCGAATGTATTTATTCCAGTAGTAACGGCTCTCTGGT
CTCGTTTCTTGGGCGACACAGTGGAGGACGAacccgagaaggagggggat
gcggaggcggcgggggaagcggcggaggcttTGTCAAACTTGcaggtgaa
gaaggagggagagaaggaggaggggtcctCCGAGGGGACTCAGGAGCCGG
ATgcagaggcgaagagggactAGGGggcgaaagcgagggaggaaaacacA
GAGAGGCGGGCGCTAAGGCGGGCTGCAGCGCGGAGGCTATGATTGCAGGG
AGGCGTGGCGTcggggaatggagggcggCGCGAACGTCGGGAGGCTGACG
AGGGCGGCCTTTCCTAGCGAGTTTGTGCCTCCCATATTCCCATGGCGTTA
AGGTGCGCATGGATAGTTagacggagaaggaaggttggaggggctggagg
gggaggacgtgcgggGCAGGGCTGAtagcaaggaagagaaggagggaggg
ccaaggGGGTTGAGCCAGGTTGGAGTCAGCGGATAGCTAAAGGCACCTGG
GGAGAAGAATTTAACATCTATCTGACTCATGGCAAGATCCTGGAGCTGTC
CTGTTGGGCTAGCGGGCGGGGTCAGCACCCCAAAGAGGTTTCTCGCCCGC
cgacagggaggaacgggaggtgGCTGTCGGCAAGAGAATTGATAGGCGTG
CACTCGTAGACAAAATAACAGCAAGTTTCCCGCACG
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Coding sequence (CDS) from alignment at KK037255.1:156421..157156+

>rna9685 ID=rna9685|Name=rna9685|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at KK037255.1:156421..157156+ (Nannochloropsis gaditana)
GCGGCTTGTTTCTCCGAATGTATTTATTCCAGTAGTAACGGCTCTCTGGT
CTCGTTTCTTGGGCGACACAGTGGAGGACGAacccgagaaggagggggat
gcggaggcggcgggggaagcggcggaggcttTGTCAAACTTGcaggtgaa
gaaggagggagagaaggaggaggggtcctCCGAGGGGACTCAGGAGCCGG
ATgcagaggcgaagagggactAGGGggcgaaagcgagggaggaaaacacA
GAGAGGCGGGCGCTAAGGCGGGCTGCAGCGCGGAGGCTATGATTGCAGGG
AGGCGTGGCGTcggggaatggagggcggCGCGAACGTCGGGAGGCTGA
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Synonyms
Publications